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An ontology-driven, case-based clinical decision support model for removable partial denture design

Identifieur interne : 000890 ( Pmc/Checkpoint ); précédent : 000889; suivant : 000891

An ontology-driven, case-based clinical decision support model for removable partial denture design

Auteurs : Qingxiao Chen [République populaire de Chine] ; Ji Wu [République populaire de Chine] ; Shusen Li [République populaire de Chine] ; Peijun Lyu [République populaire de Chine] ; Yong Wang [République populaire de Chine] ; Miao Li [République populaire de Chine]

Source :

RBID : PMC:4906524

Abstract

We present the initial work toward developing a clinical decision support model for specific design of removable partial dentures (RPDs) in dentistry. We developed an ontological paradigm to represent knowledge of a patient’s oral conditions and denture component parts. During the case-based reasoning process, a cosine similarity algorithm was applied to calculate similarity values between input patients and standard ontology cases. A group of designs from the most similar cases were output as the final results. To evaluate this model, the output designs of RPDs for 104 randomly selected patients were compared with those selected by professionals. An area under the curve of the receiver operating characteristic (AUC-ROC) was created by plotting true-positive rates against the false-positive rate at various threshold settings. The precision at position 5 of the retrieved cases was 0.67 and at the top of the curve it was 0.96, both of which are very high. The mean average of precision (MAP) was 0.61 and the normalized discounted cumulative gain (NDCG) was 0.74 both of which confirmed the efficient performance of our model. All the metrics demonstrated the efficiency of our model. This methodology merits further research development to match clinical applications for designing RPDs. This paper is organized as follows. After the introduction and description of the basis for the paper, the evaluation and results are presented in Section 2. Section 3 provides a discussion of the methodology and results. Section 4 describes the details of the ontology, similarity algorithm, and application.


Url:
DOI: 10.1038/srep27855
PubMed: 27297679
PubMed Central: 4906524


Affiliations:


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PMC:4906524

Le document en format XML

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<p>We present the initial work toward developing a clinical decision support model for specific design of removable partial dentures (RPDs) in dentistry. We developed an ontological paradigm to represent knowledge of a patient’s oral conditions and denture component parts. During the case-based reasoning process, a cosine similarity algorithm was applied to calculate similarity values between input patients and standard ontology cases. A group of designs from the most similar cases were output as the final results. To evaluate this model, the output designs of RPDs for 104 randomly selected patients were compared with those selected by professionals. An area under the curve of the receiver operating characteristic (AUC-ROC) was created by plotting true-positive rates against the false-positive rate at various threshold settings. The precision at position 5 of the retrieved cases was 0.67 and at the top of the curve it was 0.96, both of which are very high. The mean average of precision (MAP) was 0.61 and the normalized discounted cumulative gain (NDCG) was 0.74 both of which confirmed the efficient performance of our model. All the metrics demonstrated the efficiency of our model. This methodology merits further research development to match clinical applications for designing RPDs. This paper is organized as follows. After the introduction and description of the basis for the paper, the evaluation and results are presented in Section 2. Section 3 provides a discussion of the methodology and results. Section 4 describes the details of the ontology, similarity algorithm, and application.</p>
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<pmc article-type="research-article">
<pmc-dir>properties open_access</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-ta">Sci Rep</journal-id>
<journal-id journal-id-type="iso-abbrev">Sci Rep</journal-id>
<journal-title-group>
<journal-title>Scientific Reports</journal-title>
</journal-title-group>
<issn pub-type="epub">2045-2322</issn>
<publisher>
<publisher-name>Nature Publishing Group</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">27297679</article-id>
<article-id pub-id-type="pmc">4906524</article-id>
<article-id pub-id-type="pii">srep27855</article-id>
<article-id pub-id-type="doi">10.1038/srep27855</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>An ontology-driven, case-based clinical decision support model for removable partial denture design</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Chen</surname>
<given-names>Qingxiao</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a2">2</xref>
<xref ref-type="aff" rid="a3">3</xref>
<xref ref-type="aff" rid="a4">4</xref>
<xref ref-type="aff" rid="a5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wu</surname>
<given-names>Ji</given-names>
</name>
<xref ref-type="aff" rid="a6">6</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Shusen</given-names>
</name>
<xref ref-type="aff" rid="a6">6</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lyu</surname>
<given-names>Peijun</given-names>
</name>
<xref ref-type="corresp" rid="c1">a</xref>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a2">2</xref>
<xref ref-type="aff" rid="a3">3</xref>
<xref ref-type="aff" rid="a4">4</xref>
<xref ref-type="aff" rid="a5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wang</surname>
<given-names>Yong</given-names>
</name>
<xref ref-type="aff" rid="a1">1</xref>
<xref ref-type="aff" rid="a2">2</xref>
<xref ref-type="aff" rid="a3">3</xref>
<xref ref-type="aff" rid="a4">4</xref>
<xref ref-type="aff" rid="a5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Li</surname>
<given-names>Miao</given-names>
</name>
<xref ref-type="aff" rid="a6">6</xref>
</contrib>
<aff id="a1">
<label>1</label>
<institution>Center of Digital Dentistry, Peking University School and Hospital of Stomatology</institution>
, 22 Zhongguancun Avenue South, Haidian District, Beijing 100081,
<country>PR China</country>
</aff>
<aff id="a2">
<label>2</label>
<institution>Department of Prosthodontics, Peking University School and Hospital of Stomatology,</institution>
22 Zhongguancun Avenue South, Haidian District, Beijing 100081,
<country>PR China</country>
.</aff>
<aff id="a3">
<label>3</label>
<institution>National Engineering Laboratory for Digital and Material Technology of Stomatology,</institution>
22 Zhongguancun Avenue South, Haidian District, Beijing 100081,
<country>PR China</country>
.</aff>
<aff id="a4">
<label>4</label>
<institution>Research Center of Engineering and Technology for Digital Dentistry of Ministry of Health,</institution>
22 Zhongguancun Avenue South, Haidian District, Beijing 100081,
<country>PR China</country>
.</aff>
<aff id="a5">
<label>5</label>
<institution>Beijing Key Laboratory of Digital Stomatology,</institution>
22 Zhongguancun Avenue South, Haidian District, Beijing 100081,
<country>PR China</country>
.</aff>
<aff id="a6">
<label>6</label>
<institution>Tsinghua-Rohm Electronic Engineering Hall 8-301,Tsinghua University,</institution>
Beijing, 100084,
<country>PR China</country>
.</aff>
</contrib-group>
<author-notes>
<corresp id="c1">
<label>a</label>
<email>kqlpj@bjmu.edu.cn</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>14</day>
<month>06</month>
<year>2016</year>
</pub-date>
<pub-date pub-type="collection">
<year>2016</year>
</pub-date>
<volume>6</volume>
<elocation-id>27855</elocation-id>
<history>
<date date-type="received">
<day>16</day>
<month>10</month>
<year>2015</year>
</date>
<date date-type="accepted">
<day>26</day>
<month>05</month>
<year>2016</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright © 2016, Macmillan Publishers Limited</copyright-statement>
<copyright-year>2016</copyright-year>
<copyright-holder>Macmillan Publishers Limited</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/4.0/">
<pmc-comment>author-paid</pmc-comment>
<license-p>This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit
<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/4.0/">http://creativecommons.org/licenses/by/4.0/</ext-link>
</license-p>
</license>
</permissions>
<abstract>
<p>We present the initial work toward developing a clinical decision support model for specific design of removable partial dentures (RPDs) in dentistry. We developed an ontological paradigm to represent knowledge of a patient’s oral conditions and denture component parts. During the case-based reasoning process, a cosine similarity algorithm was applied to calculate similarity values between input patients and standard ontology cases. A group of designs from the most similar cases were output as the final results. To evaluate this model, the output designs of RPDs for 104 randomly selected patients were compared with those selected by professionals. An area under the curve of the receiver operating characteristic (AUC-ROC) was created by plotting true-positive rates against the false-positive rate at various threshold settings. The precision at position 5 of the retrieved cases was 0.67 and at the top of the curve it was 0.96, both of which are very high. The mean average of precision (MAP) was 0.61 and the normalized discounted cumulative gain (NDCG) was 0.74 both of which confirmed the efficient performance of our model. All the metrics demonstrated the efficiency of our model. This methodology merits further research development to match clinical applications for designing RPDs. This paper is organized as follows. After the introduction and description of the basis for the paper, the evaluation and results are presented in Section 2. Section 3 provides a discussion of the methodology and results. Section 4 describes the details of the ontology, similarity algorithm, and application.</p>
</abstract>
</article-meta>
</front>
<floats-group>
<fig id="f1">
<label>Figure 1</label>
<caption>
<title>Overview of the CDSSinRPD model.</title>
<p>The framework of our model. The EHR database and new patient are both sources of input. After the instantiation process, which was guided by the ontology that we constructed, the input data were standardized in a form of instance. Case-based reasoning began through cosine similarity between instances in the ontology and input. The treatment of similar cases informed the final output.</p>
</caption>
<graphic xlink:href="srep27855-f1"></graphic>
</fig>
<fig id="f2">
<label>Figure 2</label>
<caption>
<title>Precision of the top 1 to 86.</title>
<p>The quantity of the retrieved cases means the number of cases retrieved by our model. Precision is the metric measuring the percentage of relevant cases in the retrieved cases. Precision at the top shows precision values at a different number of retrieved cases, from one to twenty in our model. Precision at the maximum shows the ideal precision values at each number of retrieved cases.</p>
</caption>
<graphic xlink:href="srep27855-f2"></graphic>
</fig>
<fig id="f3">
<label>Figure 3</label>
<caption>
<title>Receiver operating curve (ROC).</title>
<p>An ROC curve plots the true-positive rate or sensitivity against the false-positive rate or (1–specificity). Sensitivity is another term for the true-positive rate. (1–specificity) means the false-positive rate.</p>
</caption>
<graphic xlink:href="srep27855-f3"></graphic>
</fig>
<fig id="f4">
<label>Figure 4</label>
<caption>
<title>Framework of the top-level classes of ontology.</title>
<p>This figure shows the main classes of our ontology.
<italic>Patient</italic>
is the top level.
<italic>Oral Conditions</italic>
represents related oral examinations, and
<italic>Removable Partial Dentures</italic>
represents the components of a complete prostheses. Both of them are in the subclass of
<italic>Patient</italic>
.</p>
</caption>
<graphic xlink:href="srep27855-f4"></graphic>
</fig>
<table-wrap position="float" id="t1">
<label>Table 1</label>
<caption>
<title>A schematic view of the CDSSinRPD output.</title>
</caption>
<table frame="hsides" rules="groups" border="1">
<colgroup>
<col align="left"></col>
</colgroup>
<thead valign="bottom">
<tr>
<th align="left" valign="top" charoff="50">Design 1 for Patient A:</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left" valign="top" charoff="50">
<bold>Abutments:</bold>
</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Teeth 33, 34, 43, 46</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>Direct retainer:</bold>
</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>(a)</bold>
RPI clasp location: tooth 34 rest: on the mesial occlusal surface</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>(b)</bold>
Aker clasp location: tooth 46 rest: on the mesial occlusal surface</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Note: the tips of two arms are towards mesial direction</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>Indirect retainer:</bold>
</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>(a)</bold>
Lingual rest location: cingulum on tooth 33</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">Note: it shares the same minor connector with RPI clasp on tooth 34</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>(b)</bold>
Occlusal rest location: mesial occlusal surface of tooth 43</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>Major connector:</bold>
</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>(a)</bold>
Lingual bar location: extend from 34 to 45</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">
<bold>Artificial tooth:</bold>
</td>
</tr>
<tr>
<td align="left" valign="top" charoff="50">(
<bold>a</bold>
) Semi-anatomic teeth location: teeth 45, 46, 47 number: 3</td>
</tr>
</tbody>
</table>
</table-wrap>
</floats-group>
</pmc>
<affiliations>
<list>
<country>
<li>République populaire de Chine</li>
</country>
</list>
<tree>
<country name="République populaire de Chine">
<noRegion>
<name sortKey="Chen, Qingxiao" sort="Chen, Qingxiao" uniqKey="Chen Q" first="Qingxiao" last="Chen">Qingxiao Chen</name>
</noRegion>
<name sortKey="Chen, Qingxiao" sort="Chen, Qingxiao" uniqKey="Chen Q" first="Qingxiao" last="Chen">Qingxiao Chen</name>
<name sortKey="Chen, Qingxiao" sort="Chen, Qingxiao" uniqKey="Chen Q" first="Qingxiao" last="Chen">Qingxiao Chen</name>
<name sortKey="Chen, Qingxiao" sort="Chen, Qingxiao" uniqKey="Chen Q" first="Qingxiao" last="Chen">Qingxiao Chen</name>
<name sortKey="Chen, Qingxiao" sort="Chen, Qingxiao" uniqKey="Chen Q" first="Qingxiao" last="Chen">Qingxiao Chen</name>
<name sortKey="Li, Miao" sort="Li, Miao" uniqKey="Li M" first="Miao" last="Li">Miao Li</name>
<name sortKey="Li, Shusen" sort="Li, Shusen" uniqKey="Li S" first="Shusen" last="Li">Shusen Li</name>
<name sortKey="Lyu, Peijun" sort="Lyu, Peijun" uniqKey="Lyu P" first="Peijun" last="Lyu">Peijun Lyu</name>
<name sortKey="Lyu, Peijun" sort="Lyu, Peijun" uniqKey="Lyu P" first="Peijun" last="Lyu">Peijun Lyu</name>
<name sortKey="Lyu, Peijun" sort="Lyu, Peijun" uniqKey="Lyu P" first="Peijun" last="Lyu">Peijun Lyu</name>
<name sortKey="Lyu, Peijun" sort="Lyu, Peijun" uniqKey="Lyu P" first="Peijun" last="Lyu">Peijun Lyu</name>
<name sortKey="Lyu, Peijun" sort="Lyu, Peijun" uniqKey="Lyu P" first="Peijun" last="Lyu">Peijun Lyu</name>
<name sortKey="Wang, Yong" sort="Wang, Yong" uniqKey="Wang Y" first="Yong" last="Wang">Yong Wang</name>
<name sortKey="Wang, Yong" sort="Wang, Yong" uniqKey="Wang Y" first="Yong" last="Wang">Yong Wang</name>
<name sortKey="Wang, Yong" sort="Wang, Yong" uniqKey="Wang Y" first="Yong" last="Wang">Yong Wang</name>
<name sortKey="Wang, Yong" sort="Wang, Yong" uniqKey="Wang Y" first="Yong" last="Wang">Yong Wang</name>
<name sortKey="Wang, Yong" sort="Wang, Yong" uniqKey="Wang Y" first="Yong" last="Wang">Yong Wang</name>
<name sortKey="Wu, Ji" sort="Wu, Ji" uniqKey="Wu J" first="Ji" last="Wu">Ji Wu</name>
</country>
</tree>
</affiliations>
</record>

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