The saliva microbiome of Pan and Homo
Identifieur interne : 002144 ( Main/Curation ); précédent : 002143; suivant : 002145The saliva microbiome of Pan and Homo
Auteurs : Jing Li [Allemagne, République populaire de Chine] ; Ivan Nasidze [Allemagne] ; Dominique Quinque [Allemagne, États-Unis] ; Mingkun Li [Allemagne] ; Hans-Peter Horz [Allemagne] ; Claudine André ; Rosa M. Garriga [Sierra Leone] ; Michel Halbwax [Allemagne, États-Unis] ; Anne Fischer [Allemagne, Kenya] ; Mark Stoneking [Allemagne]Source :
- BMC Microbiology [ 1471-2180 ] ; 2013.
Abstract
It is increasingly recognized that the bacteria that live in and on the human body (the microbiome) can play an important role in health and disease. The composition of the microbiome is potentially influenced by both internal factors (such as phylogeny and host physiology) and external factors (such as diet and local environment), and interspecific comparisons can aid in understanding the importance of these factors.
To gain insights into the relative importance of these factors on saliva microbiome diversity, we here analyze the saliva microbiomes of chimpanzees (
The greater similarity of the saliva microbiomes of the two
Url:
DOI: 10.1186/1471-2180-13-204
PubMed: 24025115
PubMed Central: 3848470
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Claudine André<affiliation><nlm:aff id="I5">Lola Ya Bonobo Sanctuary, Petites Chutes de la Lukaya, Kimwenza – Mont Ngafula, Kinshasa, Democratic Republic of Congo</nlm:aff>
<wicri:noCountry code="subfield">Democratic Republic of Congo</wicri:noCountry>
</affiliation>
Le document en format XML
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<affiliation wicri:level="1"><nlm:aff id="I8">Current address: Molecular Biology and Biotechnology Department, International Center for Insect Physiology and Ecology, P.O. Box 30772–00100, Nairobi, Kenya</nlm:aff>
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<author><name sortKey="Stoneking, Mark" sort="Stoneking, Mark" uniqKey="Stoneking M" first="Mark" last="Stoneking">Mark Stoneking</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The saliva microbiome of <italic>Pan</italic>
and <italic>Homo</italic>
</title>
<author><name sortKey="Li, Jing" sort="Li, Jing" uniqKey="Li J" first="Jing" last="Li">Jing Li</name>
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<country xml:lang="fr">Allemagne</country>
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<region type="district" nuts="2">District de Leipzig</region>
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<affiliation wicri:level="1"><nlm:aff id="I2">Current address: Max Planck Independent Research Group on Population Genomics, Chinese Academy of Sciences and Max Planck Society (CAS-MPG) Partner Institute for Computational Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, Shanghai 200031, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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<author><name sortKey="Nasidze, Ivan" sort="Nasidze, Ivan" uniqKey="Nasidze I" first="Ivan" last="Nasidze">Ivan Nasidze</name>
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<country xml:lang="fr">Allemagne</country>
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<author><name sortKey="Quinque, Dominique" sort="Quinque, Dominique" uniqKey="Quinque D" first="Dominique" last="Quinque">Dominique Quinque</name>
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<region type="district" nuts="2">District de Leipzig</region>
<settlement type="city">Leipzig</settlement>
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<affiliation wicri:level="2"><nlm:aff id="I3">Current address: Department of Genetics, Harvard Medical School, 77 Louis Pasteur Avenue, Boston 02115, MA, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Current address: Department of Genetics, Harvard Medical School, 77 Louis Pasteur Avenue, Boston 02115, MA</wicri:regionArea>
<placeName><region type="state">Massachusetts</region>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="I4">Division of Oral Microbiology and Immunology and Department of Medical Microbiology, RWTH Aachen University Hospital, Pauwelsstrasse 30, Aachen D-52057, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Division of Oral Microbiology and Immunology and Department of Medical Microbiology, RWTH Aachen University Hospital, Pauwelsstrasse 30, Aachen D-52057</wicri:regionArea>
<placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region>
<region type="district" nuts="2">District de Cologne</region>
<settlement type="city">Aix-la-Chapelle</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Li, Mingkun" sort="Li, Mingkun" uniqKey="Li M" first="Mingkun" last="Li">Mingkun Li</name>
<affiliation wicri:level="3"><nlm:aff id="I1">Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103</wicri:regionArea>
<placeName><region type="land" nuts="1">Saxe (Land)</region>
<region type="district" nuts="2">District de Leipzig</region>
<settlement type="city">Leipzig</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Horz, Hans Peter" sort="Horz, Hans Peter" uniqKey="Horz H" first="Hans-Peter" last="Horz">Hans-Peter Horz</name>
<affiliation wicri:level="3"><nlm:aff id="I4">Division of Oral Microbiology and Immunology and Department of Medical Microbiology, RWTH Aachen University Hospital, Pauwelsstrasse 30, Aachen D-52057, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Division of Oral Microbiology and Immunology and Department of Medical Microbiology, RWTH Aachen University Hospital, Pauwelsstrasse 30, Aachen D-52057</wicri:regionArea>
<placeName><region type="land" nuts="1">Rhénanie-du-Nord-Westphalie</region>
<region type="district" nuts="2">District de Cologne</region>
<settlement type="city">Aix-la-Chapelle</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Andre, Claudine" sort="Andre, Claudine" uniqKey="Andre C" first="Claudine" last="André">Claudine André</name>
<affiliation><nlm:aff id="I5">Lola Ya Bonobo Sanctuary, Petites Chutes de la Lukaya, Kimwenza – Mont Ngafula, Kinshasa, Democratic Republic of Congo</nlm:aff>
<wicri:noCountry code="subfield">Democratic Republic of Congo</wicri:noCountry>
</affiliation>
</author>
<author><name sortKey="Garriga, Rosa M" sort="Garriga, Rosa M" uniqKey="Garriga R" first="Rosa M" last="Garriga">Rosa M. Garriga</name>
<affiliation wicri:level="1"><nlm:aff id="I6">Tacugama Chimpanzee Sanctuary, P.O. Box 469, Freetown, Sierra Leone</nlm:aff>
<country xml:lang="fr">Sierra Leone</country>
<wicri:regionArea>Tacugama Chimpanzee Sanctuary, P.O. Box 469, Freetown</wicri:regionArea>
<wicri:noRegion>Freetown</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Halbwax, Michel" sort="Halbwax, Michel" uniqKey="Halbwax M" first="Michel" last="Halbwax">Michel Halbwax</name>
<affiliation wicri:level="3"><nlm:aff id="I1">Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103</wicri:regionArea>
<placeName><region type="land" nuts="1">Saxe (Land)</region>
<region type="district" nuts="2">District de Leipzig</region>
<settlement type="city">Leipzig</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="2"><nlm:aff id="I7">Current address: EcoHealth Alliance, 460 West 34th Street – 17th floor, New York 10001, NY, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Current address: EcoHealth Alliance, 460 West 34th Street – 17th floor, New York 10001, NY</wicri:regionArea>
<placeName><region type="state">État de New York</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Fischer, Anne" sort="Fischer, Anne" uniqKey="Fischer A" first="Anne" last="Fischer">Anne Fischer</name>
<affiliation wicri:level="3"><nlm:aff id="I1">Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103</wicri:regionArea>
<placeName><region type="land" nuts="1">Saxe (Land)</region>
<region type="district" nuts="2">District de Leipzig</region>
<settlement type="city">Leipzig</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="I8">Current address: Molecular Biology and Biotechnology Department, International Center for Insect Physiology and Ecology, P.O. Box 30772–00100, Nairobi, Kenya</nlm:aff>
<country xml:lang="fr">Kenya</country>
<wicri:regionArea>Current address: Molecular Biology and Biotechnology Department, International Center for Insect Physiology and Ecology, P.O. Box 30772–00100, Nairobi</wicri:regionArea>
<wicri:noRegion>Nairobi</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Stoneking, Mark" sort="Stoneking, Mark" uniqKey="Stoneking M" first="Mark" last="Stoneking">Mark Stoneking</name>
<affiliation wicri:level="3"><nlm:aff id="I1">Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Department of Evolutionary Genetics, Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig D-04103</wicri:regionArea>
<placeName><region type="land" nuts="1">Saxe (Land)</region>
<region type="district" nuts="2">District de Leipzig</region>
<settlement type="city">Leipzig</settlement>
</placeName>
</affiliation>
</author>
</analytic>
<series><title level="j">BMC Microbiology</title>
<idno type="eISSN">1471-2180</idno>
<imprint><date when="2013">2013</date>
</imprint>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>It is increasingly recognized that the bacteria that live in and on the human body (the microbiome) can play an important role in health and disease. The composition of the microbiome is potentially influenced by both internal factors (such as phylogeny and host physiology) and external factors (such as diet and local environment), and interspecific comparisons can aid in understanding the importance of these factors.</p>
</sec>
<sec><title>Results</title>
<p>To gain insights into the relative importance of these factors on saliva microbiome diversity, we here analyze the saliva microbiomes of chimpanzees (<italic>Pan troglodytes)</italic>
and bonobos <italic>(Pan paniscus)</italic>
from two sanctuaries in Africa, and from human workers at each sanctuary. The saliva microbiomes of the two <italic>Pan</italic>
species are more similar to one another, and the saliva microbiomes of the two human groups are more similar to one another, than are the saliva microbiomes of human workers and apes from the same sanctuary. We also looked for the existence of a core microbiome and find no evidence for a taxon-based core saliva microbiome for <italic>Homo</italic>
or <italic>Pan</italic>
. In addition, we studied the saliva microbiome from apes from the Leipzig Zoo, and found an extraordinary diversity in the zoo ape saliva microbiomes that is not found in the saliva microbiomes of the sanctuary animals.</p>
</sec>
<sec><title>Conclusions</title>
<p>The greater similarity of the saliva microbiomes of the two <italic>Pan</italic>
species to one another, and of the two human groups to one another, are in accordance with both the phylogenetic relationships of the hosts as well as with host physiology. Moreover, the results from the zoo animals suggest that novel environments can have a large impact on the microbiome, and that microbiome analyses based on captive animals should be viewed with caution as they may not reflect the microbiome of animals in the wild.</p>
</sec>
</div>
</front>
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