Virus Isolation from the First Patient with SARS-CoV-2 in Korea.
Identifieur interne : 000A89 ( PubMed/Curation ); précédent : 000A88; suivant : 000A90Virus Isolation from the First Patient with SARS-CoV-2 in Korea.
Auteurs : Wan Beom Park [Corée du Sud] ; Nak Jung Kwon [Corée du Sud] ; Su Jin Choi [Corée du Sud] ; Chang Kyung Kang [Corée du Sud] ; Pyoeng Gyun Choe [Corée du Sud] ; Jin Yong Kim [Corée du Sud] ; Jiyoung Yun [Corée du Sud] ; Gir Won Lee [Corée du Sud] ; Moon Woo Seong [Corée du Sud] ; Nam Joong Kim [Corée du Sud] ; Jeong Sun Seo [Corée du Sud] ; Myoung Don Oh [Corée du Sud]Source :
- Journal of Korean medical science [ 1598-6357 ] ; 2020.
Descripteurs français
- KwdFr :
- MESH :
- diagnostic : Infections à coronavirus, Pneumopathie virale.
- virologie : Partie orale du pharynx.
- Adulte, Femelle, Humains, Microscopie électronique à transmission, Phylogénie, République de Corée.
English descriptors
- KwdEn :
- MESH :
- geographic : Republic of Korea.
- diagnosis : Coronavirus Infections, Pneumonia, Viral.
- genetics : Betacoronavirus.
- isolation & purification : Betacoronavirus.
- virology : Oropharynx.
- Adult, Female, Humans, Microscopy, Electron, Transmission, Phylogeny, Whole Genome Sequencing.
Abstract
Novel coronavirus (SARS-CoV-2) is found to cause a large outbreak started from Wuhan since December 2019 in China and SARS-CoV-2 infections have been reported with epidemiological linkage to China in 25 countries until now. We isolated SARS-CoV-2 from the oropharyngeal sample obtained from the patient with the first laboratory-confirmed SARS-CoV-2 infection in Korea. Cytopathic effects of SARS-CoV-2 in the Vero cell cultures were confluent 3 days after the first blind passage of the sample. Coronavirus was confirmed with spherical particle having a fringe reminiscent of crown on transmission electron microscopy. Phylogenetic analyses of whole genome sequences showed that it clustered with other SARS-CoV-2 reported from Wuhan.
DOI: 10.3346/jkms.2020.35.e84
PubMed: 32080990
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Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Macrogen Inc., Seoul</wicri:regionArea></affiliation></author><author><name sortKey="Lee, Gir Won" sort="Lee, Gir Won" uniqKey="Lee G" first="Gir Won" last="Lee">Gir Won Lee</name><affiliation wicri:level="1"><nlm:affiliation>Macrogen Inc., Seoul, Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Macrogen Inc., Seoul</wicri:regionArea></affiliation></author><author><name sortKey="Seong, Moon Woo" sort="Seong, Moon Woo" uniqKey="Seong M" first="Moon Woo" last="Seong">Moon Woo Seong</name><affiliation wicri:level="1"><nlm:affiliation>Department of Laboratory Medicine, Seoul National University College of Medicine, Seoul, Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Laboratory Medicine, Seoul National University College of Medicine, Seoul</wicri:regionArea></affiliation></author><author><name sortKey="Kim, Nam Joong" sort="Kim, Nam Joong" uniqKey="Kim N" first="Nam Joong" last="Kim">Nam Joong Kim</name><affiliation wicri:level="1"><nlm:affiliation>Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Internal Medicine, Seoul National University College of Medicine, Seoul</wicri:regionArea></affiliation></author><author><name sortKey="Seo, Jeong Sun" sort="Seo, Jeong Sun" uniqKey="Seo J" first="Jeong Sun" last="Seo">Jeong Sun Seo</name><affiliation wicri:level="1"><nlm:affiliation>Macrogen Inc., Seoul, Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Macrogen Inc., Seoul</wicri:regionArea></affiliation></author><author><name sortKey="Oh, Myoung Don" sort="Oh, Myoung Don" uniqKey="Oh M" first="Myoung Don" last="Oh">Myoung Don Oh</name><affiliation wicri:level="1"><nlm:affiliation>Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea.</nlm:affiliation><country xml:lang="fr">Corée du Sud</country><wicri:regionArea>Department of Internal Medicine, Seoul National University College of Medicine, Seoul</wicri:regionArea></affiliation></author></analytic><series><title level="j">Journal of Korean medical science</title><idno type="eISSN">1598-6357</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adult</term><term>Betacoronavirus (genetics)</term><term>Betacoronavirus (isolation & purification)</term><term>Coronavirus Infections (diagnosis)</term><term>Female</term><term>Humans</term><term>Microscopy, Electron, Transmission</term><term>Oropharynx (virology)</term><term>Phylogeny</term><term>Pneumonia, Viral (diagnosis)</term><term>Republic of Korea</term><term>Whole Genome Sequencing</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Adulte</term><term>Femelle</term><term>Humains</term><term>Infections à coronavirus (diagnostic)</term><term>Microscopie électronique à transmission</term><term>Partie orale du pharynx (virologie)</term><term>Phylogénie</term><term>Pneumopathie virale (diagnostic)</term><term>République de Corée</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Republic of Korea</term></keywords><keywords scheme="MESH" qualifier="diagnosis" xml:lang="en"><term>Coronavirus Infections</term><term>Pneumonia, Viral</term></keywords><keywords scheme="MESH" qualifier="diagnostic" xml:lang="fr"><term>Infections à coronavirus</term><term>Pneumopathie virale</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Betacoronavirus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Partie orale du pharynx</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Oropharynx</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Adult</term><term>Female</term><term>Humans</term><term>Microscopy, Electron, Transmission</term><term>Phylogeny</term><term>Whole Genome Sequencing</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Adulte</term><term>Femelle</term><term>Humains</term><term>Microscopie électronique à transmission</term><term>Phylogénie</term><term>République de Corée</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Novel coronavirus (SARS-CoV-2) is found to cause a large outbreak started from Wuhan since December 2019 in China and SARS-CoV-2 infections have been reported with epidemiological linkage to China in 25 countries until now. We isolated SARS-CoV-2 from the oropharyngeal sample obtained from the patient with the first laboratory-confirmed SARS-CoV-2 infection in Korea. Cytopathic effects of SARS-CoV-2 in the Vero cell cultures were confluent 3 days after the first blind passage of the sample. Coronavirus was confirmed with spherical particle having a fringe reminiscent of crown on transmission electron microscopy. Phylogenetic analyses of whole genome sequences showed that it clustered with other SARS-CoV-2 reported from Wuhan.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">32080990</PMID><DateCompleted><Year>2020</Year><Month>03</Month><Day>16</Day></DateCompleted><DateRevised><Year>2020</Year><Month>03</Month><Day>25</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1598-6357</ISSN><JournalIssue CitedMedium="Internet"><Volume>35</Volume><Issue>7</Issue><PubDate><Year>2020</Year><Month>Feb</Month><Day>24</Day></PubDate></JournalIssue><Title>Journal of Korean medical science</Title><ISOAbbreviation>J. Korean Med. Sci.</ISOAbbreviation></Journal><ArticleTitle>Virus Isolation from the First Patient with SARS-CoV-2 in Korea.</ArticleTitle><Pagination><MedlinePgn>e84</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.3346/jkms.2020.35.e84</ELocationID><Abstract><AbstractText>Novel coronavirus (SARS-CoV-2) is found to cause a large outbreak started from Wuhan since December 2019 in China and SARS-CoV-2 infections have been reported with epidemiological linkage to China in 25 countries until now. We isolated SARS-CoV-2 from the oropharyngeal sample obtained from the patient with the first laboratory-confirmed SARS-CoV-2 infection in Korea. Cytopathic effects of SARS-CoV-2 in the Vero cell cultures were confluent 3 days after the first blind passage of the sample. Coronavirus was confirmed with spherical particle having a fringe reminiscent of crown on transmission electron microscopy. Phylogenetic analyses of whole genome sequences showed that it clustered with other SARS-CoV-2 reported from Wuhan.</AbstractText><CopyrightInformation>© 2020 The Korean Academy of Medical Sciences.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y" EqualContrib="Y"><LastName>Park</LastName><ForeName>Wan Beom</ForeName><Initials>WB</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-0022-9625</Identifier><AffiliationInfo><Affiliation>Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Infection & Immunity, Seoul National University Hospital Biomedical Research Institute, Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y" EqualContrib="Y"><LastName>Kwon</LastName><ForeName>Nak Jung</ForeName><Initials>NJ</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-0874-4146</Identifier><AffiliationInfo><Affiliation>Macrogen Inc., Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Su Jin</ForeName><Initials>SJ</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-8732-3950</Identifier><AffiliationInfo><Affiliation>Laboratory of Infection & Immunity, Seoul National University Hospital Biomedical Research Institute, Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kang</LastName><ForeName>Chang Kyung</ForeName><Initials>CK</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-1952-072X</Identifier><AffiliationInfo><Affiliation>Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Choe</LastName><ForeName>Pyoeng Gyun</ForeName><Initials>PG</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-6794-7918</Identifier><AffiliationInfo><Affiliation>Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Jin Yong</ForeName><Initials>JY</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-4306-1597</Identifier><AffiliationInfo><Affiliation>Department of Internal Medicine, Incheon Medical Center, Incheon, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yun</LastName><ForeName>Jiyoung</ForeName><Initials>J</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-5752-7423</Identifier><AffiliationInfo><Affiliation>Macrogen Inc., Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lee</LastName><ForeName>Gir Won</ForeName><Initials>GW</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-1621-1713</Identifier><AffiliationInfo><Affiliation>Macrogen Inc., Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Seong</LastName><ForeName>Moon Woo</ForeName><Initials>MW</Initials><Identifier Source="ORCID">https://orcid.org/0000-0003-2954-3677</Identifier><AffiliationInfo><Affiliation>Department of Laboratory Medicine, Seoul National University College of Medicine, Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Nam Joong</ForeName><Initials>NJ</Initials><Identifier Source="ORCID">https://orcid.org/0000-0001-6793-9467</Identifier><AffiliationInfo><Affiliation>Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Infection & Immunity, Seoul National University Hospital Biomedical Research Institute, Seoul, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Seo</LastName><ForeName>Jeong Sun</ForeName><Initials>JS</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-5818-5533</Identifier><AffiliationInfo><Affiliation>Macrogen Inc., Seoul, Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Precision Medicine Center, Seoul National University Bundang Hospital, Seongnam, Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Oh</LastName><ForeName>Myoung Don</ForeName><Initials>MD</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-2344-7695</Identifier><AffiliationInfo><Affiliation>Department of Internal Medicine, Seoul National University College of Medicine, Seoul, Korea.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Laboratory of Infection & Immunity, Seoul National University Hospital Biomedical Research Institute, Seoul, Korea. mdohmd@snu.ac.kr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D002363">Case Reports</PublicationType><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>02</Month><Day>24</Day></ArticleDate></Article><MedlineJournalInfo><Country>Korea (South)</Country><MedlineTA>J Korean Med Sci</MedlineTA><NlmUniqueID>8703518</NlmUniqueID><ISSNLinking>1011-8934</ISSNLinking></MedlineJournalInfo><SupplMeshList><SupplMeshName Type="Disease" UI="C000657245">COVID-19</SupplMeshName><SupplMeshName Type="Organism" UI="C000656484">severe acute respiratory syndrome coronavirus 2</SupplMeshName></SupplMeshList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000073640" MajorTopicYN="Y">Betacoronavirus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018352" MajorTopicYN="Y">Coronavirus Infections</DescriptorName><QualifierName UI="Q000175" MajorTopicYN="N">diagnosis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D046529" MajorTopicYN="N">Microscopy, Electron, Transmission</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D009960" MajorTopicYN="N">Oropharynx</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D011024" MajorTopicYN="Y">Pneumonia, Viral</DescriptorName><QualifierName UI="Q000175" MajorTopicYN="N">diagnosis</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D056910" MajorTopicYN="N" Type="Geographic">Republic of Korea</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000073336" MajorTopicYN="Y">Whole Genome Sequencing</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">2019 Novel Coronavirus</Keyword><Keyword MajorTopicYN="N">Culture</Keyword><Keyword MajorTopicYN="N">Korea</Keyword><Keyword MajorTopicYN="N">Microscopy, Electron</Keyword><Keyword MajorTopicYN="N">Phylogeny</Keyword></KeywordList><CoiStatement>The authors have no potential conflicts of interest to disclose.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>02</Month><Day>11</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>02</Month><Day>17</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>2</Month><Day>22</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>2</Month><Day>23</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>17</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32080990</ArticleId><ArticleId IdType="pii">35.e84</ArticleId><ArticleId IdType="doi">10.3346/jkms.2020.35.e84</ArticleId><ArticleId IdType="pmc">PMC7036342</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Mol Biol Evol. 2018 Jun 1;35(6):1547-1549</Citation><ArticleIdList><ArticleId 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