New porcine epidemic diarrhoea virus variant with a large deletion in the spike gene identified in domestic pigs
Identifieur interne : 000542 ( Pmc/Checkpoint ); précédent : 000541; suivant : 000543New porcine epidemic diarrhoea virus variant with a large deletion in the spike gene identified in domestic pigs
Auteurs : Tsuneyuki Masuda ; Satoshi Murakami [Japon] ; Osamu Takahashi [Japon] ; Ayako Miyazaki ; Seiichi Ohashi ; Hiroshi Yamasato ; Tohru SuzukiSource :
- Archives of Virology [ 0304-8608 ] ; 2015.
Abstract
From October 2013 to date, approximately 1,000 outbreaks of porcine epidemic diarrhoea virus (PEDV) have occurred in Japan. Porcine epidemic diarrhoea with non-lethal effects in piglets was identified in Tottori prefecture in October 2014. Complete genome analysis revealed that the causative pathogen, Tottori2, is a new PEDV variant with a large (582 nt) deletion in the spike gene. Phylogenetic analysis indicated that the Tottori2 PEDV strain might have been derived from the current PEDV strains circulating in domestic pigs. Moreover, the Tottori2 PEDV strain was successfully isolated in Vero cells by serial passage.
The online version of this article (doi:10.1007/s00705-015-2522-z) contains supplementary material, which is available to authorized users.
Url:
DOI: 10.1007/s00705-015-2522-z
PubMed: 26162305
PubMed Central: 7087250
Affiliations:
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identified in domestic pigs</title><author><name sortKey="Masuda, Tsuneyuki" sort="Masuda, Tsuneyuki" uniqKey="Masuda T" first="Tsuneyuki" last="Masuda">Tsuneyuki Masuda</name><affiliation><nlm:aff id="Aff1">Kurayoshi Livestock Hygiene Service Center, Kurayoshi, Tottori Japan</nlm:aff><wicri:noCountry code="subfield">Tottori Japan</wicri:noCountry></affiliation></author><author><name sortKey="Murakami, Satoshi" sort="Murakami, Satoshi" uniqKey="Murakami S" first="Satoshi" last="Murakami">Satoshi Murakami</name><affiliation wicri:level="3"><nlm:aff id="Aff2">Life Technologies Japan Ltd., Thermo Fisher Scientific, Tokyo, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Life Technologies Japan Ltd., Thermo Fisher Scientific, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Takahashi, Osamu" sort="Takahashi, Osamu" uniqKey="Takahashi O" first="Osamu" last="Takahashi">Osamu Takahashi</name><affiliation wicri:level="3"><nlm:aff id="Aff2">Life Technologies Japan Ltd., Thermo Fisher Scientific, Tokyo, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Life Technologies Japan Ltd., Thermo Fisher Scientific, Tokyo</wicri:regionArea><placeName><settlement type="city">Tokyo</settlement><region type="région">Région de Kantō</region></placeName></affiliation></author><author><name sortKey="Miyazaki, Ayako" sort="Miyazaki, Ayako" uniqKey="Miyazaki A" first="Ayako" last="Miyazaki">Ayako Miyazaki</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.416882.1</institution-id><institution-id institution-id-type="ISNI">0000000405309488</institution-id><institution>Viral Disease and Epidemiology Research Division,</institution><institution>National Institute of Animal Health, National Agriculture and Food Research Organization,</institution></institution-wrap>3-1-5 Kannondai, Tsukuba, Ibaraki 305-0856 Japan</nlm:aff><wicri:noCountry code="subfield">Ibaraki 305-0856 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Ohashi, Seiichi" sort="Ohashi, Seiichi" uniqKey="Ohashi S" first="Seiichi" last="Ohashi">Seiichi Ohashi</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.416882.1</institution-id><institution-id institution-id-type="ISNI">0000000405309488</institution-id><institution>Viral Disease and Epidemiology Research Division,</institution><institution>National Institute of Animal Health, National Agriculture and Food Research Organization,</institution></institution-wrap>3-1-5 Kannondai, Tsukuba, Ibaraki 305-0856 Japan</nlm:aff><wicri:noCountry code="subfield">Ibaraki 305-0856 Japan</wicri:noCountry></affiliation></author><author><name sortKey="Yamasato, Hiroshi" sort="Yamasato, Hiroshi" uniqKey="Yamasato H" first="Hiroshi" last="Yamasato">Hiroshi Yamasato</name><affiliation><nlm:aff id="Aff1">Kurayoshi Livestock Hygiene Service Center, Kurayoshi, Tottori Japan</nlm:aff><wicri:noCountry code="subfield">Tottori Japan</wicri:noCountry></affiliation></author><author><name sortKey="Suzuki, Tohru" sort="Suzuki, Tohru" uniqKey="Suzuki T" first="Tohru" last="Suzuki">Tohru Suzuki</name><affiliation><nlm:aff id="Aff3"><institution-wrap><institution-id institution-id-type="GRID">grid.416882.1</institution-id><institution-id institution-id-type="ISNI">0000000405309488</institution-id><institution>Viral Disease and Epidemiology Research Division,</institution><institution>National Institute of Animal Health, National Agriculture and Food Research Organization,</institution></institution-wrap>3-1-5 Kannondai, Tsukuba, Ibaraki 305-0856 Japan</nlm:aff><wicri:noCountry code="subfield">Ibaraki 305-0856 Japan</wicri:noCountry></affiliation></author></analytic><series><title level="j">Archives of Virology</title><idno type="ISSN">0304-8608</idno><idno type="eISSN">1432-8798</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="Par1">From October 2013 to date, approximately 1,000 outbreaks of porcine epidemic diarrhoea virus (PEDV) have occurred in Japan. Porcine epidemic diarrhoea with non-lethal effects in piglets was identified in Tottori prefecture in October 2014. Complete genome analysis revealed that the causative pathogen, Tottori2, is a new PEDV variant with a large (582 nt) deletion in the spike gene. Phylogenetic analysis indicated that the Tottori2 PEDV strain might have been derived from the current PEDV strains circulating in domestic pigs. Moreover, the Tottori2 PEDV strain was successfully isolated in Vero cells by serial passage.</p><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1007/s00705-015-2522-z) contains supplementary material, which is available to authorized users.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Wood, En" uniqKey="Wood E">EN Wood</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pensaert, Mb" uniqKey="Pensaert M">MB Pensaert</name></author><author><name sortKey="De Bouck, P" uniqKey="De Bouck P">P de Bouck</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Reeth, K" uniqKey="Van Reeth K">K Van Reeth</name></author><author><name sortKey="Pensaert, M" uniqKey="Pensaert M">M Pensaert</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Song, D" uniqKey="Song D">D 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<front><journal-meta><journal-id journal-id-type="nlm-ta">Arch Virol</journal-id><journal-id journal-id-type="iso-abbrev">Arch. Virol</journal-id><journal-title-group><journal-title>Archives of Virology</journal-title></journal-title-group><issn pub-type="ppub">0304-8608</issn><issn pub-type="epub">1432-8798</issn><publisher><publisher-name>Springer Vienna</publisher-name><publisher-loc>Vienna</publisher-loc></publisher></journal-meta><article-meta><article-id pub-id-type="pmid">26162305</article-id><article-id pub-id-type="pmc">7087250</article-id><article-id pub-id-type="publisher-id">2522</article-id><article-id pub-id-type="doi">10.1007/s00705-015-2522-z</article-id><article-categories><subj-group subj-group-type="heading"><subject>Brief Report</subject></subj-group></article-categories><title-group><article-title>New porcine epidemic diarrhoea virus variant with a large deletion in the spike gene identified in domestic pigs</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Masuda</surname><given-names>Tsuneyuki</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author"><name><surname>Murakami</surname><given-names>Satoshi</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Takahashi</surname><given-names>Osamu</given-names></name><xref ref-type="aff" rid="Aff2">2</xref></contrib><contrib contrib-type="author"><name><surname>Miyazaki</surname><given-names>Ayako</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Ohashi</surname><given-names>Seiichi</given-names></name><xref ref-type="aff" rid="Aff3">3</xref></contrib><contrib contrib-type="author"><name><surname>Yamasato</surname><given-names>Hiroshi</given-names></name><xref ref-type="aff" rid="Aff1">1</xref></contrib><contrib contrib-type="author" corresp="yes"><name><surname>Suzuki</surname><given-names>Tohru</given-names></name><address><phone>81-29-838-7841</phone><email>t_suzuki@affrc.go.jp</email></address><xref ref-type="aff" rid="Aff3">3</xref></contrib><aff id="Aff1"><label>1</label>Kurayoshi Livestock Hygiene Service Center, Kurayoshi, Tottori Japan</aff><aff id="Aff2"><label>2</label>Life Technologies Japan Ltd., Thermo Fisher Scientific, Tokyo, Japan</aff><aff id="Aff3"><label>3</label><institution-wrap><institution-id institution-id-type="GRID">grid.416882.1</institution-id><institution-id institution-id-type="ISNI">0000000405309488</institution-id><institution>Viral Disease and Epidemiology Research Division,</institution><institution>National Institute of Animal Health, National Agriculture and Food Research Organization,</institution></institution-wrap>3-1-5 Kannondai, Tsukuba, Ibaraki 305-0856 Japan</aff></contrib-group><pub-date pub-type="epub"><day>11</day><month>7</month><year>2015</year></pub-date><pub-date pub-type="ppub"><year>2015</year></pub-date><volume>160</volume><issue>10</issue><fpage>2565</fpage><lpage>2568</lpage><history><date date-type="received"><day>1</day><month>4</month><year>2015</year></date><date date-type="accepted"><day>1</day><month>7</month><year>2015</year></date></history><permissions><copyright-statement>© Springer-Verlag Wien 2015</copyright-statement><license><license-p>This article is made available via the PMC Open Access Subset for unrestricted research re-use and secondary analysis in any form or by any means with acknowledgement of the original source. These permissions are granted for the duration of the World Health Organization (WHO) declaration of COVID-19 as a global pandemic.</license-p></license></permissions><abstract id="Abs1"><p id="Par1">From October 2013 to date, approximately 1,000 outbreaks of porcine epidemic diarrhoea virus (PEDV) have occurred in Japan. Porcine epidemic diarrhoea with non-lethal effects in piglets was identified in Tottori prefecture in October 2014. Complete genome analysis revealed that the causative pathogen, Tottori2, is a new PEDV variant with a large (582 nt) deletion in the spike gene. Phylogenetic analysis indicated that the Tottori2 PEDV strain might have been derived from the current PEDV strains circulating in domestic pigs. Moreover, the Tottori2 PEDV strain was successfully isolated in Vero cells by serial passage.</p><sec><title>Electronic supplementary material</title><p>The online version of this article (doi:10.1007/s00705-015-2522-z) contains supplementary material, which is available to authorized users.</p></sec></abstract><kwd-group xml:lang="en"><title>Keywords</title><kwd>Vero Cell</kwd><kwd>Porcine Epidemic Diarrhoea Virus</kwd><kwd>Porcine Epidemic Diarrhoea Virus Strain</kwd><kwd>Tottori Prefecture</kwd><kwd>Porcine Epidemic Diarrhoea Virus Isolate</kwd></kwd-group><custom-meta-group><custom-meta><meta-name>issue-copyright-statement</meta-name><meta-value>© Springer-Verlag Wien 2015</meta-value></custom-meta></custom-meta-group></article-meta></front></pmc><affiliations><list><country><li>Japon</li></country><region><li>Région de Kantō</li></region><settlement><li>Tokyo</li></settlement></list><tree><noCountry><name sortKey="Masuda, Tsuneyuki" sort="Masuda, Tsuneyuki" uniqKey="Masuda T" first="Tsuneyuki" last="Masuda">Tsuneyuki Masuda</name><name sortKey="Miyazaki, Ayako" sort="Miyazaki, Ayako" uniqKey="Miyazaki A" first="Ayako" last="Miyazaki">Ayako Miyazaki</name><name sortKey="Ohashi, Seiichi" sort="Ohashi, Seiichi" uniqKey="Ohashi S" first="Seiichi" last="Ohashi">Seiichi Ohashi</name><name sortKey="Suzuki, Tohru" sort="Suzuki, Tohru" uniqKey="Suzuki T" first="Tohru" last="Suzuki">Tohru Suzuki</name><name sortKey="Yamasato, Hiroshi" sort="Yamasato, Hiroshi" uniqKey="Yamasato H" first="Hiroshi" last="Yamasato">Hiroshi Yamasato</name></noCountry><country name="Japon"><region name="Région de Kantō"><name sortKey="Murakami, Satoshi" sort="Murakami, Satoshi" uniqKey="Murakami S" first="Satoshi" last="Murakami">Satoshi Murakami</name></region><name sortKey="Takahashi, Osamu" sort="Takahashi, Osamu" uniqKey="Takahashi O" first="Osamu" last="Takahashi">Osamu Takahashi</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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