Laboratory readiness and response for novel coronavirus (2019-nCoV) in expert laboratories in 30 EU/EEA countries, January 2020
Identifieur interne : 000988 ( Ncbi/Merge ); précédent : 000987; suivant : 000989Laboratory readiness and response for novel coronavirus (2019-nCoV) in expert laboratories in 30 EU/EEA countries, January 2020
Auteurs : Chantal B. E. M. Reusken [Pays-Bas] ; Eeva K. Broberg [Suède] ; Bart Haagmans [Pays-Bas] ; Adam Meijer [Pays-Bas] ; Victor M. Corman [Allemagne] ; Anna Papa [Grèce] ; Remi Charrel [France] ; Christian Drosten [Allemagne] ; Marion Koopmans [Pays-Bas] ; Katrin Leitmeyer [Suède]Source :
- Eurosurveillance [ 1025-496X ] ; 2020.
Descripteurs français
- KwdFr :
- ARN viral (génétique), Analyse de séquence, Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Flambées de maladies, Humains, Infections à coronavirus (diagnostic), Infections à coronavirus (génétique), Infections à coronavirus (virologie), Laboratoires (normes), Normes de référence, Pneumopathie virale (génétique), RT-PCR (), Sensibilité et spécificité, Surveillance sentinelle, Techniques de laboratoire clinique (), Techniques de laboratoire clinique (normes), Union européenne.
- MESH :
- diagnostic : Infections à coronavirus.
- génétique : ARN viral, Coronavirus, Infections à coronavirus, Pneumopathie virale.
- isolement et purification : Coronavirus.
- normes : Laboratoires, Techniques de laboratoire clinique.
- virologie : Infections à coronavirus.
- Analyse de séquence, Coronavirus, Flambées de maladies, Humains, Normes de référence, RT-PCR, Sensibilité et spécificité, Surveillance sentinelle, Techniques de laboratoire clinique, Union européenne.
English descriptors
- KwdEn :
- Clinical Laboratory Techniques (methods), Clinical Laboratory Techniques (standards), Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus Infections (diagnosis), Coronavirus Infections (genetics), Coronavirus Infections (virology), Disease Outbreaks, European Union, Humans, Laboratories (standards), Pneumonia, Viral (genetics), RNA, Viral (genetics), Reference Standards, Reverse Transcriptase Polymerase Chain Reaction (methods), Sensitivity and Specificity, Sentinel Surveillance, Sequence Analysis.
- MESH :
- chemical , genetics : RNA, Viral.
- classification : Coronavirus.
- diagnosis : Coronavirus Infections.
- genetics : Coronavirus, Coronavirus Infections, Pneumonia, Viral.
- isolation & purification : Coronavirus.
- methods : Clinical Laboratory Techniques, Reverse Transcriptase Polymerase Chain Reaction.
- standards : Clinical Laboratory Techniques, Laboratories.
- virology : Coronavirus Infections.
- Disease Outbreaks, European Union, Humans, Reference Standards, Sensitivity and Specificity, Sentinel Surveillance, Sequence Analysis.
Abstract
Timely detection of novel coronavirus (2019-nCoV) infection cases is crucial to interrupt the spread of this virus. We assessed the required expertise and capacity for molecular detection of 2019-nCoV in specialised laboratories in 30 European Union/European Economic Area (EU/EEA) countries. Thirty-eight laboratories in 24 EU/EEA countries had diagnostic tests available by 29 January 2020. A coverage of all EU/EEA countries was expected by mid-February. Availability of primers/probes, positive controls and personnel were main implementation barriers.
Url:
DOI: 10.2807/1560-7917.ES.2020.25.6.2000082
PubMed: 32046815
PubMed Central: 7029448
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PMC:7029448Le document en format XML
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<front><div type="abstract" xml:lang="en"><p>Timely detection of novel coronavirus (2019-nCoV) infection cases is crucial to interrupt the spread of this virus. We assessed the required expertise and capacity for molecular detection of 2019-nCoV in specialised laboratories in 30 European Union/European Economic Area (EU/EEA) countries. Thirty-eight laboratories in 24 EU/EEA countries had diagnostic tests available by 29 January 2020. A coverage of all EU/EEA countries was expected by mid-February. Availability of primers/probes, positive controls and personnel were main implementation barriers.</p>
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<author><name sortKey="Broberg, Eeva K" sort="Broberg, Eeva K" uniqKey="Broberg E" first="Eeva K." last="Broberg">Eeva K. Broberg</name>
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<author><name sortKey="Haagmans, Bart" sort="Haagmans, Bart" uniqKey="Haagmans B" first="Bart" last="Haagmans">Bart Haagmans</name>
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<author><name sortKey="Meijer, Adam" sort="Meijer, Adam" uniqKey="Meijer A" first="Adam" last="Meijer">Adam Meijer</name>
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<author><name sortKey="Corman, Victor M" sort="Corman, Victor M" uniqKey="Corman V" first="Victor M." last="Corman">Victor M. Corman</name>
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<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Charité - Universitätsmedizin Berlin Institute of Virology, Berlin</wicri:regionArea>
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<settlement type="city">Berlin</settlement>
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<affiliation wicri:level="3"><nlm:aff id="aff5">German Centre for Infection Research (DZIF), Berlin, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
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<author><name sortKey="Papa, Anna" sort="Papa, Anna" uniqKey="Papa A" first="Anna" last="Papa">Anna Papa</name>
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<country xml:lang="fr">Grèce</country>
<wicri:regionArea>Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki</wicri:regionArea>
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<author><name sortKey="Charrel, Remi" sort="Charrel, Remi" uniqKey="Charrel R" first="Remi" last="Charrel">Remi Charrel</name>
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<country xml:lang="fr">France</country>
<wicri:regionArea>Unité des Virus Emergents (Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), Marseille</wicri:regionArea>
<placeName><region type="region">Provence-Alpes-Côte d'Azur</region>
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<settlement type="city">Marseille</settlement>
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<author><name sortKey="Drosten, Christian" sort="Drosten, Christian" uniqKey="Drosten C" first="Christian" last="Drosten">Christian Drosten</name>
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<affiliation wicri:level="3"><nlm:aff id="aff5">German Centre for Infection Research (DZIF), Berlin, Germany</nlm:aff>
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<author><name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name>
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<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
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<author><name sortKey="Leitmeyer, Katrin" sort="Leitmeyer, Katrin" uniqKey="Leitmeyer K" first="Katrin" last="Leitmeyer">Katrin Leitmeyer</name>
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<country xml:lang="fr">Suède</country>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Laboratory readiness and response for novel coronavirus (2019-nCoV) in expert laboratories in 30 EU/EEA countries, January 2020</title>
<author><name sortKey="Reusken, Chantal B E M" sort="Reusken, Chantal B E M" uniqKey="Reusken C" first="Chantal B. E. M." last="Reusken">Chantal B. E. M. Reusken</name>
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<author><name sortKey="Broberg, Eeva K" sort="Broberg, Eeva K" uniqKey="Broberg E" first="Eeva K." last="Broberg">Eeva K. Broberg</name>
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<country xml:lang="fr">Suède</country>
<wicri:regionArea>European Centre for Disease Prevention and Control, Solna</wicri:regionArea>
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<author><name sortKey="Haagmans, Bart" sort="Haagmans, Bart" uniqKey="Haagmans B" first="Bart" last="Haagmans">Bart Haagmans</name>
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<wicri:regionArea>Viroscience department, Erasmus MC, Rotterdam</wicri:regionArea>
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</placeName>
</affiliation>
</author>
<author><name sortKey="Meijer, Adam" sort="Meijer, Adam" uniqKey="Meijer A" first="Adam" last="Meijer">Adam Meijer</name>
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<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Centre for Infectious Disease Control, National Institute for Public Health and the Environment, Bilthoven</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Corman, Victor M" sort="Corman, Victor M" uniqKey="Corman V" first="Victor M." last="Corman">Victor M. Corman</name>
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<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Charité - Universitätsmedizin Berlin Institute of Virology, Berlin</wicri:regionArea>
<placeName><region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff5">German Centre for Infection Research (DZIF), Berlin, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>German Centre for Infection Research (DZIF), Berlin</wicri:regionArea>
<placeName><region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Papa, Anna" sort="Papa, Anna" uniqKey="Papa A" first="Anna" last="Papa">Anna Papa</name>
<affiliation wicri:level="1"><nlm:aff id="aff6">Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki, Greece</nlm:aff>
<country xml:lang="fr">Grèce</country>
<wicri:regionArea>Department of Microbiology, Medical School, Aristotle University of Thessaloniki, Thessaloniki</wicri:regionArea>
<wicri:noRegion>Thessaloniki</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Charrel, Remi" sort="Charrel, Remi" uniqKey="Charrel R" first="Remi" last="Charrel">Remi Charrel</name>
<affiliation wicri:level="3"><nlm:aff id="aff7">Unité des Virus Emergents (Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), Marseille, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Unité des Virus Emergents (Aix-Marseille Univ-IRD 190-Inserm 1207-IHU Méditerranée Infection), Marseille</wicri:regionArea>
<placeName><region type="region">Provence-Alpes-Côte d'Azur</region>
<region type="old region">Provence-Alpes-Côte d'Azur</region>
<settlement type="city">Marseille</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Drosten, Christian" sort="Drosten, Christian" uniqKey="Drosten C" first="Christian" last="Drosten">Christian Drosten</name>
<affiliation wicri:level="3"><nlm:aff id="aff4">Charité - Universitätsmedizin Berlin Institute of Virology, Berlin, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Charité - Universitätsmedizin Berlin Institute of Virology, Berlin</wicri:regionArea>
<placeName><region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="3"><nlm:aff id="aff5">German Centre for Infection Research (DZIF), Berlin, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>German Centre for Infection Research (DZIF), Berlin</wicri:regionArea>
<placeName><region type="land" nuts="3">Berlin</region>
<settlement type="city">Berlin</settlement>
</placeName>
</affiliation>
</author>
<author><name sortKey="Koopmans, Marion" sort="Koopmans, Marion" uniqKey="Koopmans M" first="Marion" last="Koopmans">Marion Koopmans</name>
<affiliation wicri:level="3"><nlm:aff id="aff2">Viroscience department, Erasmus MC, Rotterdam, the Netherlands</nlm:aff>
<country xml:lang="fr" wicri:curation="lc">Pays-Bas</country>
<wicri:regionArea>Viroscience department, Erasmus MC, Rotterdam</wicri:regionArea>
<placeName><settlement type="city">Rotterdam</settlement>
<region nuts="2" type="province">Hollande-Méridionale</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Leitmeyer, Katrin" sort="Leitmeyer, Katrin" uniqKey="Leitmeyer K" first="Katrin" last="Leitmeyer">Katrin Leitmeyer</name>
<affiliation wicri:level="1"><nlm:aff id="aff3">European Centre for Disease Prevention and Control, Solna, Sweden</nlm:aff>
<country xml:lang="fr">Suède</country>
<wicri:regionArea>European Centre for Disease Prevention and Control, Solna</wicri:regionArea>
<wicri:noRegion>Solna</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Eurosurveillance</title>
<idno type="ISSN">1025-496X</idno>
<idno type="eISSN">1560-7917</idno>
<imprint><date when="2020">2020</date>
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<front><div type="abstract" xml:lang="en"><p>Timely detection of novel coronavirus (2019-nCoV) infection cases is crucial to interrupt the spread of this virus. We assessed the required expertise and capacity for molecular detection of 2019-nCoV in specialised laboratories in 30 European Union/European Economic Area (EU/EEA) countries. Thirty-eight laboratories in 24 EU/EEA countries had diagnostic tests available by 29 January 2020. A coverage of all EU/EEA countries was expected by mid-February. Availability of primers/probes, positive controls and personnel were main implementation barriers.</p>
</div>
</front>
<back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Tan, Wj" uniqKey="Tan W">WJ Tan</name>
</author>
<author><name sortKey="Zhao, X" uniqKey="Zhao X">X Zhao</name>
</author>
<author><name sortKey="Ma, Xj" uniqKey="Ma X">XJ Ma</name>
</author>
<author><name sortKey="Wang, W" uniqKey="Wang W">W Wang</name>
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<author><name sortKey="Charrel, Remi" sort="Charrel, Remi" uniqKey="Charrel R" first="Remi" last="Charrel">Remi Charrel</name>
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<keywords scheme="MESH" xml:lang="en"><term>Disease Outbreaks</term>
<term>European Union</term>
<term>Humans</term>
<term>Reference Standards</term>
<term>Sensitivity and Specificity</term>
<term>Sentinel Surveillance</term>
<term>Sequence Analysis</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term>
<term>Coronavirus</term>
<term>Flambées de maladies</term>
<term>Humains</term>
<term>Normes de référence</term>
<term>RT-PCR</term>
<term>Sensibilité et spécificité</term>
<term>Surveillance sentinelle</term>
<term>Techniques de laboratoire clinique</term>
<term>Union européenne</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">Timely detection of novel coronavirus (2019-nCoV) infection cases is crucial to interrupt the spread of this virus. We assessed the required expertise and capacity for molecular detection of 2019-nCoV in specialised laboratories in 30 European Union/European Economic Area (EU/EEA) countries. Thirty-eight laboratories in 24 EU/EEA countries had diagnostic tests available by 29 January 2020. A coverage of all EU/EEA countries was expected by mid-February. Availability of primers/probes, positive controls and personnel were main implementation barriers.</div>
</front>
</TEI>
</pubmed>
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