Viral and Atypical Bacterial Respiratory Infections in a University Teaching Hospital.
Identifieur interne : 000594 ( PubMed/Corpus ); précédent : 000593; suivant : 000595Viral and Atypical Bacterial Respiratory Infections in a University Teaching Hospital.
Auteurs : Agca Harun ; Ener BeyzaSource :
- Japanese journal of infectious diseases [ 1884-2836 ] ; 2019.
English descriptors
- KwdEn :
- Adolescent, Adult, Aged, Aged, 80 and over, Bacteria (classification), Bacteria (isolation & purification), Bacterial Infections (epidemiology), Bacterial Infections (microbiology), Bronchoalveolar Lavage Fluid (microbiology), Bronchoalveolar Lavage Fluid (virology), Child, Child, Preschool, Female, Hospitals, Teaching, Hospitals, University, Humans, Infant, Infant, Newborn, Male, Middle Aged, Nasopharynx (microbiology), Nasopharynx (virology), Polymerase Chain Reaction, Prevalence, Respiratory Tract Infections (epidemiology), Respiratory Tract Infections (microbiology), Respiratory Tract Infections (virology), Retrospective Studies, Turkey (epidemiology), Virus Diseases (epidemiology), Virus Diseases (virology), Viruses (classification), Viruses (isolation & purification), Young Adult.
- MESH :
- geographic , epidemiology : Turkey.
- classification : Bacteria, Viruses.
- epidemiology : Bacterial Infections, Respiratory Tract Infections, Virus Diseases.
- isolation & purification : Bacteria, Viruses.
- microbiology : Bacterial Infections, Bronchoalveolar Lavage Fluid, Nasopharynx, Respiratory Tract Infections.
- virology : Bronchoalveolar Lavage Fluid, Nasopharynx, Respiratory Tract Infections, Virus Diseases.
- Adolescent, Adult, Aged, Aged, 80 and over, Child, Child, Preschool, Female, Hospitals, Teaching, Hospitals, University, Humans, Infant, Infant, Newborn, Male, Middle Aged, Polymerase Chain Reaction, Prevalence, Retrospective Studies, Young Adult.
Abstract
Respiratory viral and atypical bacterial agents lead to infections in a large spectrum, from mild symptoms to respiratory failure. In the present study, we aimed to detect multiple viral and bacterial agents in the respiratory samples of inpatients by real-time polymerase chain reaction (RT-PCR). Nasopharyngeal swabs and broncho-alveolar lavage samples from inpatients with respiratory infection symptoms at the Uludag University Hospital between December 1, 2015 and March 31,2018 were investigated. DNA/RNA was extracted using the EZ1 Virus Mini Kit v2.0 (Qiagen, Belgium) with the EZ1 extraction device (Qiagen, Belgium). The R-GENE® RT-PCR (Biomerioux, France) kit was used to detect influenza A, influenza B, respiratory syncytial virus (RSV), human metapneumovirus, rhinovirus/enterovirus (RV/EV), adenovirus, human bocavirus (hBoV), corona virus, parainfluenza virus, Chlamydia pneumoniae/Mycoplasma pneumoniae, and Legionella pneumophila in Rotor-Gene Q (Qiagen, Belgium). Patients were aged between 0 and 90 years. Overall, 177 (56.9%) patients were men and 134 (43.1%) were women. A total of 311 samples were analyzed, of which 214 (68.8%) were positive. In total, 360 agents, including 338 viruses and 22 bacteria, were detected. The commonest agents were influenza A+B (n = 65, 18,1%), hBoV (n = 64, 17.8%), RV/EV (n = 56, 15.6%), and RSV (n = 47, 13.1%). Rapid diagnosis of viral infections by RT-PCR is important for the specific treatment of patients.
DOI: 10.7883/yoken.JJID.2018.510
PubMed: 31257239
Links to Exploration step
pubmed:31257239Le document en format XML
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<author><name sortKey="Harun, Agca" sort="Harun, Agca" uniqKey="Harun A" first="Agca" last="Harun">Agca Harun</name>
<affiliation><nlm:affiliation>Department of Medical Microbiology, Faculty of Medicine, Bursa Uludag University.</nlm:affiliation>
</affiliation>
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<author><name sortKey="Beyza, Ener" sort="Beyza, Ener" uniqKey="Beyza E" first="Ener" last="Beyza">Ener Beyza</name>
<affiliation><nlm:affiliation>Department of Medical Microbiology, Faculty of Medicine, Bursa Uludag University.</nlm:affiliation>
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<author><name sortKey="Beyza, Ener" sort="Beyza, Ener" uniqKey="Beyza E" first="Ener" last="Beyza">Ener Beyza</name>
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<series><title level="j">Japanese journal of infectious diseases</title>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Adolescent</term>
<term>Adult</term>
<term>Aged</term>
<term>Aged, 80 and over</term>
<term>Bacteria (classification)</term>
<term>Bacteria (isolation & purification)</term>
<term>Bacterial Infections (epidemiology)</term>
<term>Bacterial Infections (microbiology)</term>
<term>Bronchoalveolar Lavage Fluid (microbiology)</term>
<term>Bronchoalveolar Lavage Fluid (virology)</term>
<term>Child</term>
<term>Child, Preschool</term>
<term>Female</term>
<term>Hospitals, Teaching</term>
<term>Hospitals, University</term>
<term>Humans</term>
<term>Infant</term>
<term>Infant, Newborn</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Nasopharynx (microbiology)</term>
<term>Nasopharynx (virology)</term>
<term>Polymerase Chain Reaction</term>
<term>Prevalence</term>
<term>Respiratory Tract Infections (epidemiology)</term>
<term>Respiratory Tract Infections (microbiology)</term>
<term>Respiratory Tract Infections (virology)</term>
<term>Retrospective Studies</term>
<term>Turkey (epidemiology)</term>
<term>Virus Diseases (epidemiology)</term>
<term>Virus Diseases (virology)</term>
<term>Viruses (classification)</term>
<term>Viruses (isolation & purification)</term>
<term>Young Adult</term>
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<term>Viruses</term>
</keywords>
<keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Bacterial Infections</term>
<term>Respiratory Tract Infections</term>
<term>Virus Diseases</term>
</keywords>
<keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Bacteria</term>
<term>Viruses</term>
</keywords>
<keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Bacterial Infections</term>
<term>Bronchoalveolar Lavage Fluid</term>
<term>Nasopharynx</term>
<term>Respiratory Tract Infections</term>
</keywords>
<keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Bronchoalveolar Lavage Fluid</term>
<term>Nasopharynx</term>
<term>Respiratory Tract Infections</term>
<term>Virus Diseases</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Adolescent</term>
<term>Adult</term>
<term>Aged</term>
<term>Aged, 80 and over</term>
<term>Child</term>
<term>Child, Preschool</term>
<term>Female</term>
<term>Hospitals, Teaching</term>
<term>Hospitals, University</term>
<term>Humans</term>
<term>Infant</term>
<term>Infant, Newborn</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Polymerase Chain Reaction</term>
<term>Prevalence</term>
<term>Retrospective Studies</term>
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<front><div type="abstract" xml:lang="en">Respiratory viral and atypical bacterial agents lead to infections in a large spectrum, from mild symptoms to respiratory failure. In the present study, we aimed to detect multiple viral and bacterial agents in the respiratory samples of inpatients by real-time polymerase chain reaction (RT-PCR). Nasopharyngeal swabs and broncho-alveolar lavage samples from inpatients with respiratory infection symptoms at the Uludag University Hospital between December 1, 2015 and March 31,2018 were investigated. DNA/RNA was extracted using the EZ1 Virus Mini Kit v2.0 (Qiagen, Belgium) with the EZ1 extraction device (Qiagen, Belgium). The R-GENE<sup>®</sup>
RT-PCR (Biomerioux, France) kit was used to detect influenza A, influenza B, respiratory syncytial virus (RSV), human metapneumovirus, rhinovirus/enterovirus (RV/EV), adenovirus, human bocavirus (hBoV), corona virus, parainfluenza virus, Chlamydia pneumoniae/Mycoplasma pneumoniae, and Legionella pneumophila in Rotor-Gene Q (Qiagen, Belgium). Patients were aged between 0 and 90 years. Overall, 177 (56.9%) patients were men and 134 (43.1%) were women. A total of 311 samples were analyzed, of which 214 (68.8%) were positive. In total, 360 agents, including 338 viruses and 22 bacteria, were detected. The commonest agents were influenza A+B (n = 65, 18,1%), hBoV (n = 64, 17.8%), RV/EV (n = 56, 15.6%), and RSV (n = 47, 13.1%). Rapid diagnosis of viral infections by RT-PCR is important for the specific treatment of patients.</div>
</front>
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<Title>Japanese journal of infectious diseases</Title>
<ISOAbbreviation>Jpn. J. Infect. Dis.</ISOAbbreviation>
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<ArticleTitle>Viral and Atypical Bacterial Respiratory Infections in a University Teaching Hospital.</ArticleTitle>
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<Abstract><AbstractText>Respiratory viral and atypical bacterial agents lead to infections in a large spectrum, from mild symptoms to respiratory failure. In the present study, we aimed to detect multiple viral and bacterial agents in the respiratory samples of inpatients by real-time polymerase chain reaction (RT-PCR). Nasopharyngeal swabs and broncho-alveolar lavage samples from inpatients with respiratory infection symptoms at the Uludag University Hospital between December 1, 2015 and March 31,2018 were investigated. DNA/RNA was extracted using the EZ1 Virus Mini Kit v2.0 (Qiagen, Belgium) with the EZ1 extraction device (Qiagen, Belgium). The R-GENE<sup>®</sup>
RT-PCR (Biomerioux, France) kit was used to detect influenza A, influenza B, respiratory syncytial virus (RSV), human metapneumovirus, rhinovirus/enterovirus (RV/EV), adenovirus, human bocavirus (hBoV), corona virus, parainfluenza virus, Chlamydia pneumoniae/Mycoplasma pneumoniae, and Legionella pneumophila in Rotor-Gene Q (Qiagen, Belgium). Patients were aged between 0 and 90 years. Overall, 177 (56.9%) patients were men and 134 (43.1%) were women. A total of 311 samples were analyzed, of which 214 (68.8%) were positive. In total, 360 agents, including 338 viruses and 22 bacteria, were detected. The commonest agents were influenza A+B (n = 65, 18,1%), hBoV (n = 64, 17.8%), RV/EV (n = 56, 15.6%), and RSV (n = 47, 13.1%). Rapid diagnosis of viral infections by RT-PCR is important for the specific treatment of patients.</AbstractText>
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<ForeName>Agca</ForeName>
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<Language>eng</Language>
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<MeshHeading><DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName>
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<MeshHeading><DescriptorName UI="D000368" MajorTopicYN="N">Aged</DescriptorName>
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<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
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<MeshHeading><DescriptorName UI="D001992" MajorTopicYN="N">Bronchoalveolar Lavage Fluid</DescriptorName>
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<MeshHeading><DescriptorName UI="D007231" MajorTopicYN="N">Infant, Newborn</DescriptorName>
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<MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName>
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<MeshHeading><DescriptorName UI="D008875" MajorTopicYN="N">Middle Aged</DescriptorName>
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<MeshHeading><DescriptorName UI="D009305" MajorTopicYN="N">Nasopharynx</DescriptorName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D016133" MajorTopicYN="N">Polymerase Chain Reaction</DescriptorName>
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<MeshHeading><DescriptorName UI="D015995" MajorTopicYN="N">Prevalence</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName UI="D012141" MajorTopicYN="N">Respiratory Tract Infections</DescriptorName>
<QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName>
<QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName>
<QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName>
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<MeshHeading><DescriptorName UI="D012189" MajorTopicYN="N">Retrospective Studies</DescriptorName>
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<MeshHeading><DescriptorName UI="D055815" MajorTopicYN="N">Young Adult</DescriptorName>
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