Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.
Identifieur interne : 000023 ( PubMed/Corpus ); précédent : 000022; suivant : 000024Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.
Auteurs : Chun Li ; Yanling Yang ; Linzhu RenSource :
- Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [ 1567-7257 ] ; 2020.
Abstract
The Corona Virus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a Public Health Emergency of International Concern. However, so far, there are still controversies about the source of the virus and its intermediate host. Here, we found the novel coronavirus was closely related to coronaviruses derived from five wild animals, including Paguma larvata, Paradoxurus hermaphroditus, Civet, Aselliscus stoliczkanus and Rhinolophus sinicus, and was in the same branch of the phylogenetic tree. However, genome and ORF1a homology show that the virus is not the same coronavirus as the coronavirus derived from these five animals, whereas the virus has the highest homology with Bat coronavirus isolate RaTG13.
DOI: 10.1016/j.meegid.2020.104285
PubMed: 32169673
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.</title><author><name sortKey="Li, Chun" sort="Li, Chun" uniqKey="Li C" first="Chun" last="Li">Chun Li</name><affiliation><nlm:affiliation>The Chinese Peoples' Liberation Army 964 Hospital, Changchun, China.</nlm:affiliation></affiliation></author><author><name sortKey="Yang, Yanling" sort="Yang, Yanling" uniqKey="Yang Y" first="Yanling" last="Yang">Yanling Yang</name><affiliation><nlm:affiliation>Institute of Special Wild Economic Animals and Plants, Chinese Academy of Agricultural Sciences, Changchun 130112, China. Electronic address: m18043213639@163.com.</nlm:affiliation></affiliation></author><author><name sortKey="Ren, Linzhu" sort="Ren, Linzhu" uniqKey="Ren L" first="Linzhu" last="Ren">Linzhu Ren</name><affiliation><nlm:affiliation>College of Animal Sciences, Jilin University, Changchun 130062, China. Electronic address: renlz@jlu.edu.cn.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2020">2020</date><idno type="RBID">pubmed:32169673</idno><idno type="pmid">32169673</idno><idno type="doi">10.1016/j.meegid.2020.104285</idno><idno type="wicri:Area/PubMed/Corpus">000023</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000023</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.</title><author><name sortKey="Li, Chun" sort="Li, Chun" uniqKey="Li C" first="Chun" last="Li">Chun Li</name><affiliation><nlm:affiliation>The Chinese Peoples' Liberation Army 964 Hospital, Changchun, China.</nlm:affiliation></affiliation></author><author><name sortKey="Yang, Yanling" sort="Yang, Yanling" uniqKey="Yang Y" first="Yanling" last="Yang">Yanling Yang</name><affiliation><nlm:affiliation>Institute of Special Wild Economic Animals and Plants, Chinese Academy of Agricultural Sciences, Changchun 130112, China. Electronic address: m18043213639@163.com.</nlm:affiliation></affiliation></author><author><name sortKey="Ren, Linzhu" sort="Ren, Linzhu" uniqKey="Ren L" first="Linzhu" last="Ren">Linzhu Ren</name><affiliation><nlm:affiliation>College of Animal Sciences, Jilin University, Changchun 130062, China. Electronic address: renlz@jlu.edu.cn.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases</title><idno type="eISSN">1567-7257</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Corona Virus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a Public Health Emergency of International Concern. However, so far, there are still controversies about the source of the virus and its intermediate host. Here, we found the novel coronavirus was closely related to coronaviruses derived from five wild animals, including Paguma larvata, Paradoxurus hermaphroditus, Civet, Aselliscus stoliczkanus and Rhinolophus sinicus, and was in the same branch of the phylogenetic tree. However, genome and ORF1a homology show that the virus is not the same coronavirus as the coronavirus derived from these five animals, whereas the virus has the highest homology with Bat coronavirus isolate RaTG13.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">32169673</PMID><DateRevised><Year>2020</Year><Month>03</Month><Day>14</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1567-7257</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2020</Year><Month>Mar</Month><Day>10</Day></PubDate></JournalIssue><Title>Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases</Title><ISOAbbreviation>Infect. Genet. Evol.</ISOAbbreviation></Journal><ArticleTitle>Genetic evolution analysis of 2019 novel coronavirus and coronavirus from other species.</ArticleTitle><Pagination><MedlinePgn>104285</MedlinePgn></Pagination><ELocationID EIdType="pii" ValidYN="Y">S1567-1348(20)30116-7</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1016/j.meegid.2020.104285</ELocationID><Abstract><AbstractText>The Corona Virus Disease 2019 (COVID-19) caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a Public Health Emergency of International Concern. However, so far, there are still controversies about the source of the virus and its intermediate host. Here, we found the novel coronavirus was closely related to coronaviruses derived from five wild animals, including Paguma larvata, Paradoxurus hermaphroditus, Civet, Aselliscus stoliczkanus and Rhinolophus sinicus, and was in the same branch of the phylogenetic tree. However, genome and ORF1a homology show that the virus is not the same coronavirus as the coronavirus derived from these five animals, whereas the virus has the highest homology with Bat coronavirus isolate RaTG13.</AbstractText><CopyrightInformation>Copyright © 2019. Published by Elsevier B.V.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Li</LastName><ForeName>Chun</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>The Chinese Peoples' Liberation Army 964 Hospital, Changchun, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Yang</LastName><ForeName>Yanling</ForeName><Initials>Y</Initials><AffiliationInfo><Affiliation>Institute of Special Wild Economic Animals and Plants, Chinese Academy of Agricultural Sciences, Changchun 130112, China. Electronic address: m18043213639@163.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ren</LastName><ForeName>Linzhu</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>College of Animal Sciences, Jilin University, Changchun 130062, China. Electronic address: renlz@jlu.edu.cn.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016422">Letter</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>10</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Infect Genet Evol</MedlineTA><NlmUniqueID>101084138</NlmUniqueID><ISSNLinking>1567-1348</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">2019 Coronavirus disease (COVID-19)</Keyword><Keyword MajorTopicYN="N">Genetic evolution</Keyword><Keyword MajorTopicYN="N">Genome</Keyword><Keyword MajorTopicYN="N">Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)</Keyword><Keyword MajorTopicYN="N">Structural protein</Keyword></KeywordList><CoiStatement>Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper.</CoiStatement></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2020</Year><Month>03</Month><Day>06</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2020</Year><Month>03</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2020</Year><Month>03</Month><Day>10</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>3</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>3</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>15</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>aheadofprint</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32169673</ArticleId><ArticleId IdType="pii">S1567-1348(20)30116-7</ArticleId><ArticleId IdType="doi">10.1016/j.meegid.2020.104285</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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