Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal.
Identifieur interne : 000441 ( PubMed/Checkpoint ); précédent : 000440; suivant : 000442Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal.
Auteurs : Ranjit Sah [Népal] ; Alfonso J. Rodriguez-Morales [Colombie] ; Runa Jha [Népal] ; Daniel K W. Chu [République populaire de Chine] ; Haogao Gu [République populaire de Chine] ; Malik Peiris [République populaire de Chine] ; Anup Bastola [Népal] ; Bibek Kumar Lal [Népal] ; Hemant Chanda Ojha [Népal] ; Ali A. Rabaan [Arabie saoudite] ; Lysien I. Zambrano [Honduras] ; Anthony Costello [Royaume-Uni] ; Kouichi Morita [Japon] ; Basu Dev Pandey [Népal] ; Leo L M. Poon [République populaire de Chine]Source :
- Microbiology resource announcements [ 2576-098X ] ; 2020.
Abstract
A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen of a Nepalese patient with coronavirus disease 2019 (COVID-19), who had returned to Nepal after traveling to Wuhan, China.
DOI: 10.1128/MRA.00169-20
PubMed: 32165386
Affiliations:
- Arabie saoudite, Colombie, Honduras, Japon, Népal, Royaume-Uni, République populaire de Chine
- Angleterre, Grand Londres
- Londres
- University College de Londres
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Rodriguez-Morales</name><affiliation wicri:level="1"><nlm:affiliation>Public Health and Infection Research Group, Faculty of Health Sciences, Universidad Tecnologica de Pereira, Pereira, Risaralda, Colombia.</nlm:affiliation><country xml:lang="fr">Colombie</country><wicri:regionArea>Public Health and Infection Research Group, Faculty of Health Sciences, Universidad Tecnologica de Pereira, Pereira, Risaralda</wicri:regionArea><wicri:noRegion>Risaralda</wicri:noRegion></affiliation></author><author><name sortKey="Jha, Runa" sort="Jha, Runa" uniqKey="Jha R" first="Runa" last="Jha">Runa Jha</name><affiliation wicri:level="1"><nlm:affiliation>National Public Health Laboratory, Kathmandu, Nepal.</nlm:affiliation><country xml:lang="fr">Népal</country><wicri:regionArea>National Public Health Laboratory, Kathmandu</wicri:regionArea><wicri:noRegion>Kathmandu</wicri:noRegion></affiliation></author><author><name sortKey="Chu, Daniel K W" sort="Chu, Daniel K W" uniqKey="Chu D" first="Daniel K W" last="Chu">Daniel K W. Chu</name><affiliation wicri:level="1"><nlm:affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region</wicri:regionArea><wicri:noRegion>Hong Kong Special Administrative Region</wicri:noRegion></affiliation></author><author><name sortKey="Gu, Haogao" sort="Gu, Haogao" uniqKey="Gu H" first="Haogao" last="Gu">Haogao Gu</name><affiliation wicri:level="1"><nlm:affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region</wicri:regionArea><wicri:noRegion>Hong Kong Special Administrative Region</wicri:noRegion></affiliation></author><author><name sortKey="Peiris, Malik" sort="Peiris, Malik" uniqKey="Peiris M" first="Malik" last="Peiris">Malik Peiris</name><affiliation wicri:level="1"><nlm:affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region</wicri:regionArea><wicri:noRegion>Hong Kong Special Administrative Region</wicri:noRegion></affiliation></author><author><name sortKey="Bastola, Anup" sort="Bastola, Anup" uniqKey="Bastola A" first="Anup" last="Bastola">Anup Bastola</name><affiliation wicri:level="1"><nlm:affiliation>Sukraraj Tropical and Infectious Disease Hospital, Kathmandu, Nepal.</nlm:affiliation><country xml:lang="fr">Népal</country><wicri:regionArea>Sukraraj Tropical and Infectious Disease Hospital, Kathmandu</wicri:regionArea><wicri:noRegion>Kathmandu</wicri:noRegion></affiliation></author><author><name sortKey="Lal, Bibek Kumar" sort="Lal, Bibek Kumar" uniqKey="Lal B" first="Bibek Kumar" last="Lal">Bibek Kumar Lal</name><affiliation wicri:level="1"><nlm:affiliation>Epidemiology and Disease Control Division, Government of Nepal, Kathmandu, Nepal.</nlm:affiliation><country xml:lang="fr">Népal</country><wicri:regionArea>Epidemiology and Disease Control Division, Government of Nepal, Kathmandu</wicri:regionArea><wicri:noRegion>Kathmandu</wicri:noRegion></affiliation></author><author><name sortKey="Ojha, Hemant Chanda" sort="Ojha, Hemant Chanda" uniqKey="Ojha H" first="Hemant Chanda" last="Ojha">Hemant Chanda Ojha</name><affiliation wicri:level="1"><nlm:affiliation>Epidemiology and Disease Control Division, Government of Nepal, Kathmandu, Nepal.</nlm:affiliation><country xml:lang="fr">Népal</country><wicri:regionArea>Epidemiology and Disease Control Division, Government of Nepal, Kathmandu</wicri:regionArea><wicri:noRegion>Kathmandu</wicri:noRegion></affiliation></author><author><name sortKey="Rabaan, Ali A" sort="Rabaan, Ali A" uniqKey="Rabaan A" first="Ali A" last="Rabaan">Ali A. Rabaan</name><affiliation wicri:level="1"><nlm:affiliation>Johns Hopkins Aramco Healthcare, Dhahran, Saudi Arabia.</nlm:affiliation><country xml:lang="fr">Arabie saoudite</country><wicri:regionArea>Johns Hopkins Aramco Healthcare, Dhahran</wicri:regionArea><wicri:noRegion>Dhahran</wicri:noRegion></affiliation></author><author><name sortKey="Zambrano, Lysien I" sort="Zambrano, Lysien I" uniqKey="Zambrano L" first="Lysien I" last="Zambrano">Lysien I. Zambrano</name><affiliation wicri:level="1"><nlm:affiliation>Departments of Physiological and Morphological Sciences, School of Medical Sciences, Universidad Nacional Autónoma de Honduras (UNAH), Tegucigalpa, Honduras.</nlm:affiliation><country xml:lang="fr">Honduras</country><wicri:regionArea>Departments of Physiological and Morphological Sciences, School of Medical Sciences, Universidad Nacional Autónoma de Honduras (UNAH), Tegucigalpa</wicri:regionArea><wicri:noRegion>Tegucigalpa</wicri:noRegion></affiliation></author><author><name sortKey="Costello, Anthony" sort="Costello, Anthony" uniqKey="Costello A" first="Anthony" last="Costello">Anthony Costello</name><affiliation wicri:level="4"><nlm:affiliation>Global Health and Sustainable Development, University College London, London, United Kingdom.</nlm:affiliation><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Global Health and Sustainable Development, University College London, London</wicri:regionArea><placeName><settlement type="city">Londres</settlement><region type="country">Angleterre</region><region type="région" nuts="1">Grand Londres</region></placeName><orgName type="university">University College de Londres</orgName></affiliation></author><author><name sortKey="Morita, Kouichi" sort="Morita, Kouichi" uniqKey="Morita K" first="Kouichi" last="Morita">Kouichi Morita</name><affiliation wicri:level="1"><nlm:affiliation>Department of Virology, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan.</nlm:affiliation><country xml:lang="fr">Japon</country><wicri:regionArea>Department of Virology, Institute of Tropical Medicine, Nagasaki University, Nagasaki</wicri:regionArea><wicri:noRegion>Nagasaki</wicri:noRegion></affiliation></author><author><name sortKey="Pandey, Basu Dev" sort="Pandey, Basu Dev" uniqKey="Pandey B" first="Basu Dev" last="Pandey">Basu Dev Pandey</name><affiliation wicri:level="1"><nlm:affiliation>Sukraraj Tropical and Infectious Disease Hospital, Kathmandu, Nepal.</nlm:affiliation><country xml:lang="fr">Népal</country><wicri:regionArea>Sukraraj Tropical and Infectious Disease Hospital, Kathmandu</wicri:regionArea><wicri:noRegion>Kathmandu</wicri:noRegion></affiliation></author><author><name sortKey="Poon, Leo L M" sort="Poon, Leo L M" uniqKey="Poon L" first="Leo L M" last="Poon">Leo L M. Poon</name><affiliation wicri:level="1"><nlm:affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</nlm:affiliation><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region</wicri:regionArea><wicri:noRegion>Hong Kong Special Administrative Region</wicri:noRegion></affiliation></author></analytic><series><title level="j">Microbiology resource announcements</title><idno type="eISSN">2576-098X</idno><imprint><date when="2020" type="published">2020</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen of a Nepalese patient with coronavirus disease 2019 (COVID-19), who had returned to Nepal after traveling to Wuhan, China.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">32165386</PMID><DateRevised><Year>2020</Year><Month>03</Month><Day>13</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">2576-098X</ISSN><JournalIssue CitedMedium="Internet"><Volume>9</Volume><Issue>11</Issue><PubDate><Year>2020</Year><Month>Mar</Month><Day>12</Day></PubDate></JournalIssue><Title>Microbiology resource announcements</Title><ISOAbbreviation>Microbiol Resour Announc</ISOAbbreviation></Journal><ArticleTitle>Complete Genome Sequence of a 2019 Novel Coronavirus (SARS-CoV-2) Strain Isolated in Nepal.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">e00169-20</ELocationID><ELocationID EIdType="doi" ValidYN="Y">10.1128/MRA.00169-20</ELocationID><Abstract><AbstractText>A complete genome sequence was obtained for a severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) strain isolated from an oropharyngeal swab specimen of a Nepalese patient with coronavirus disease 2019 (COVID-19), who had returned to Nepal after traveling to Wuhan, China.</AbstractText><CopyrightInformation>Copyright © 2020 Sah et al.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y" EqualContrib="Y"><LastName>Sah</LastName><ForeName>Ranjit</ForeName><Initials>R</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-2695-8714</Identifier><AffiliationInfo><Affiliation>National Public Health Laboratory, Kathmandu, Nepal ranjitsah@iom.edu.np.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y" EqualContrib="Y"><LastName>Rodriguez-Morales</LastName><ForeName>Alfonso J</ForeName><Initials>AJ</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9773-2192</Identifier><AffiliationInfo><Affiliation>Public Health and Infection Research Group, Faculty of Health Sciences, Universidad Tecnologica de Pereira, Pereira, Risaralda, Colombia.</Affiliation></AffiliationInfo><AffiliationInfo><Affiliation>Grupo de Investigación Biomedicina, Faculty of Medicine, Fundación Universitaria Autónoma de las Américas, Pereira, Risaralda, Colombia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jha</LastName><ForeName>Runa</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>National Public Health Laboratory, Kathmandu, Nepal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Chu</LastName><ForeName>Daniel K W</ForeName><Initials>DKW</Initials><AffiliationInfo><Affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gu</LastName><ForeName>Haogao</ForeName><Initials>H</Initials><AffiliationInfo><Affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Peiris</LastName><ForeName>Malik</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bastola</LastName><ForeName>Anup</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Sukraraj Tropical and Infectious Disease Hospital, Kathmandu, Nepal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lal</LastName><ForeName>Bibek Kumar</ForeName><Initials>BK</Initials><AffiliationInfo><Affiliation>Epidemiology and Disease Control Division, Government of Nepal, Kathmandu, Nepal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ojha</LastName><ForeName>Hemant Chanda</ForeName><Initials>HC</Initials><AffiliationInfo><Affiliation>Epidemiology and Disease Control Division, Government of Nepal, Kathmandu, Nepal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Rabaan</LastName><ForeName>Ali A</ForeName><Initials>AA</Initials><Identifier Source="ORCID">https://orcid.org/0000-0002-6774-9847</Identifier><AffiliationInfo><Affiliation>Johns Hopkins Aramco Healthcare, Dhahran, Saudi Arabia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zambrano</LastName><ForeName>Lysien I</ForeName><Initials>LI</Initials><Identifier Source="ORCID">http://orcid.org/0000-0001-9002-5807</Identifier><AffiliationInfo><Affiliation>Departments of Physiological and Morphological Sciences, School of Medical Sciences, Universidad Nacional Autónoma de Honduras (UNAH), Tegucigalpa, Honduras.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Costello</LastName><ForeName>Anthony</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Global Health and Sustainable Development, University College London, London, United Kingdom.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Morita</LastName><ForeName>Kouichi</ForeName><Initials>K</Initials><AffiliationInfo><Affiliation>Department of Virology, Institute of Tropical Medicine, Nagasaki University, Nagasaki, Japan.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pandey</LastName><ForeName>Basu Dev</ForeName><Initials>BD</Initials><AffiliationInfo><Affiliation>Sukraraj Tropical and Infectious Disease Hospital, Kathmandu, Nepal.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Poon</LastName><ForeName>Leo L M</ForeName><Initials>LLM</Initials><AffiliationInfo><Affiliation>School of Public Health, LKS Faculty of Medicine, The University of Hong Kong, Hong Kong Special Administrative Region, China.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2020</Year><Month>03</Month><Day>12</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Microbiol Resour Announc</MedlineTA><NlmUniqueID>101728794</NlmUniqueID><ISSNLinking>2576-098X</ISSNLinking></MedlineJournalInfo></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2020</Year><Month>3</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2020</Year><Month>3</Month><Day>14</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2020</Year><Month>3</Month><Day>14</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">32165386</ArticleId><ArticleId IdType="pii">9/11/e00169-20</ArticleId><ArticleId IdType="doi">10.1128/MRA.00169-20</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Arabie saoudite</li><li>Colombie</li><li>Honduras</li><li>Japon</li><li>Népal</li><li>Royaume-Uni</li><li>République populaire de Chine</li></country><region><li>Angleterre</li><li>Grand Londres</li></region><settlement><li>Londres</li></settlement><orgName><li>University College de Londres</li></orgName></list><tree><country name="Népal"><noRegion><name sortKey="Sah, Ranjit" sort="Sah, Ranjit" uniqKey="Sah R" first="Ranjit" last="Sah">Ranjit Sah</name></noRegion><name sortKey="Bastola, Anup" sort="Bastola, Anup" uniqKey="Bastola A" first="Anup" last="Bastola">Anup Bastola</name><name sortKey="Jha, Runa" sort="Jha, Runa" uniqKey="Jha R" first="Runa" last="Jha">Runa Jha</name><name sortKey="Lal, Bibek Kumar" sort="Lal, Bibek Kumar" uniqKey="Lal B" first="Bibek Kumar" last="Lal">Bibek Kumar Lal</name><name sortKey="Ojha, Hemant Chanda" sort="Ojha, Hemant Chanda" uniqKey="Ojha H" first="Hemant Chanda" last="Ojha">Hemant Chanda Ojha</name><name sortKey="Pandey, Basu Dev" sort="Pandey, Basu Dev" uniqKey="Pandey B" first="Basu Dev" last="Pandey">Basu Dev Pandey</name></country><country name="Colombie"><noRegion><name sortKey="Rodriguez Morales, Alfonso J" sort="Rodriguez Morales, Alfonso J" uniqKey="Rodriguez Morales A" first="Alfonso J" last="Rodriguez-Morales">Alfonso J. Rodriguez-Morales</name></noRegion></country><country name="République populaire de Chine"><noRegion><name sortKey="Chu, Daniel K W" sort="Chu, Daniel K W" uniqKey="Chu D" first="Daniel K W" last="Chu">Daniel K W. Chu</name></noRegion><name sortKey="Gu, Haogao" sort="Gu, Haogao" uniqKey="Gu H" first="Haogao" last="Gu">Haogao Gu</name><name sortKey="Peiris, Malik" sort="Peiris, Malik" uniqKey="Peiris M" first="Malik" last="Peiris">Malik Peiris</name><name sortKey="Poon, Leo L M" sort="Poon, Leo L M" uniqKey="Poon L" first="Leo L M" last="Poon">Leo L M. Poon</name></country><country name="Arabie saoudite"><noRegion><name sortKey="Rabaan, Ali A" sort="Rabaan, Ali A" uniqKey="Rabaan A" first="Ali A" last="Rabaan">Ali A. Rabaan</name></noRegion></country><country name="Honduras"><noRegion><name sortKey="Zambrano, Lysien I" sort="Zambrano, Lysien I" uniqKey="Zambrano L" first="Lysien I" last="Zambrano">Lysien I. Zambrano</name></noRegion></country><country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Costello, Anthony" sort="Costello, Anthony" uniqKey="Costello A" first="Anthony" last="Costello">Anthony Costello</name></region></country><country name="Japon"><noRegion><name sortKey="Morita, Kouichi" sort="Morita, Kouichi" uniqKey="Morita K" first="Kouichi" last="Morita">Kouichi Morita</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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