Complete genome sequence analysis of chicken astrovirus isolate from India.
Identifieur interne : 000598 ( Ncbi/Merge ); précédent : 000597; suivant : 000599Complete genome sequence analysis of chicken astrovirus isolate from India.
Auteurs : Amrutlal K. Patel [Inde] ; Ramesh J. Pandit [Inde] ; Jalpa R. Thakkar [Inde] ; Ankit T. Hinsu [Inde] ; Vinod C. Pandey [Inde] ; Joy K. Pal [Inde] ; Kantilal S. Prajapati [Inde] ; Subhash J. Jakhesara [Inde] ; Chaitanya G. Joshi [Inde]Source :
- Veterinary research communications [ 1573-7446 ] ; 2017.
Descripteurs français
- KwdFr :
- MESH :
- génétique : Avastrovirus, Génome viral, Épitopes.
- isolement et purification : Avastrovirus.
- Animaux, Avastrovirus, Inde, Poulets, Similitude de séquences d'acides nucléiques.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : Epitopes.
- classification : Avastrovirus.
- genetics : Avastrovirus, Genome, Viral.
- isolation & purification : Avastrovirus.
- Animals, Chickens, India, Sequence Homology, Nucleic Acid.
Abstract
Chicken astroviruses have been known to cause severe disease in chickens leading to increased mortality and "white chicks" condition. Here we aim to characterize the causative agent of visceral gout suspected for astrovirus infection in broiler breeder chickens.
DOI: 10.1007/s11259-016-9673-6
PubMed: 28012117
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000616
- to stream PubMed, to step Curation: 000616
- to stream PubMed, to step Checkpoint: 000613
Links to Exploration step
pubmed:28012117Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Complete genome sequence analysis of chicken astrovirus isolate from India.</title><author><name sortKey="Patel, Amrutlal K" sort="Patel, Amrutlal K" uniqKey="Patel A" first="Amrutlal K" last="Patel">Amrutlal K. Patel</name><affiliation wicri:level="1"><nlm:affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India. amrutkpatel@gmail.com.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Pandit, Ramesh J" sort="Pandit, Ramesh J" uniqKey="Pandit R" first="Ramesh J" last="Pandit">Ramesh J. Pandit</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Thakkar, Jalpa R" sort="Thakkar, Jalpa R" uniqKey="Thakkar J" first="Jalpa R" last="Thakkar">Jalpa R. Thakkar</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Hinsu, Ankit T" sort="Hinsu, Ankit T" uniqKey="Hinsu A" first="Ankit T" last="Hinsu">Ankit T. Hinsu</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Pandey, Vinod C" sort="Pandey, Vinod C" uniqKey="Pandey V" first="Vinod C" last="Pandey">Vinod C. Pandey</name><affiliation wicri:level="1"><nlm:affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Pal, Joy K" sort="Pal, Joy K" uniqKey="Pal J" first="Joy K" last="Pal">Joy K. Pal</name><affiliation wicri:level="1"><nlm:affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Prajapati, Kantilal S" sort="Prajapati, Kantilal S" uniqKey="Prajapati K" first="Kantilal S" last="Prajapati">Kantilal S. Prajapati</name><affiliation wicri:level="1"><nlm:affiliation>Department of Veterinary Pathology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Veterinary Pathology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Jakhesara, Subhash J" sort="Jakhesara, Subhash J" uniqKey="Jakhesara S" first="Subhash J" last="Jakhesara">Subhash J. Jakhesara</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Joshi, Chaitanya G" sort="Joshi, Chaitanya G" uniqKey="Joshi C" first="Chaitanya G" last="Joshi">Chaitanya G. Joshi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2017">2017</date><idno type="RBID">pubmed:28012117</idno><idno type="pmid">28012117</idno><idno type="doi">10.1007/s11259-016-9673-6</idno><idno type="wicri:Area/PubMed/Corpus">000616</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000616</idno><idno type="wicri:Area/PubMed/Curation">000616</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000616</idno><idno type="wicri:Area/PubMed/Checkpoint">000613</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000613</idno><idno type="wicri:Area/Ncbi/Merge">000598</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Complete genome sequence analysis of chicken astrovirus isolate from India.</title><author><name sortKey="Patel, Amrutlal K" sort="Patel, Amrutlal K" uniqKey="Patel A" first="Amrutlal K" last="Patel">Amrutlal K. Patel</name><affiliation wicri:level="1"><nlm:affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India. amrutkpatel@gmail.com.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Pandit, Ramesh J" sort="Pandit, Ramesh J" uniqKey="Pandit R" first="Ramesh J" last="Pandit">Ramesh J. Pandit</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Thakkar, Jalpa R" sort="Thakkar, Jalpa R" uniqKey="Thakkar J" first="Jalpa R" last="Thakkar">Jalpa R. Thakkar</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Hinsu, Ankit T" sort="Hinsu, Ankit T" uniqKey="Hinsu A" first="Ankit T" last="Hinsu">Ankit T. Hinsu</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Pandey, Vinod C" sort="Pandey, Vinod C" uniqKey="Pandey V" first="Vinod C" last="Pandey">Vinod C. Pandey</name><affiliation wicri:level="1"><nlm:affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Pal, Joy K" sort="Pal, Joy K" uniqKey="Pal J" first="Joy K" last="Pal">Joy K. Pal</name><affiliation wicri:level="1"><nlm:affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Prajapati, Kantilal S" sort="Prajapati, Kantilal S" uniqKey="Prajapati K" first="Kantilal S" last="Prajapati">Kantilal S. Prajapati</name><affiliation wicri:level="1"><nlm:affiliation>Department of Veterinary Pathology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Veterinary Pathology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Jakhesara, Subhash J" sort="Jakhesara, Subhash J" uniqKey="Jakhesara S" first="Subhash J" last="Jakhesara">Subhash J. Jakhesara</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author><author><name sortKey="Joshi, Chaitanya G" sort="Joshi, Chaitanya G" uniqKey="Joshi C" first="Chaitanya G" last="Joshi">Chaitanya G. Joshi</name><affiliation wicri:level="1"><nlm:affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</nlm:affiliation><country xml:lang="fr">Inde</country><wicri:regionArea>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat</wicri:regionArea><wicri:noRegion>Gujarat</wicri:noRegion></affiliation></author></analytic><series><title level="j">Veterinary research communications</title><idno type="eISSN">1573-7446</idno><imprint><date when="2017" type="published">2017</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Avastrovirus (classification)</term><term>Avastrovirus (genetics)</term><term>Avastrovirus (isolation & purification)</term><term>Chickens</term><term>Epitopes (genetics)</term><term>Genome, Viral (genetics)</term><term>India</term><term>Sequence Homology, Nucleic Acid</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Animaux</term><term>Avastrovirus ()</term><term>Avastrovirus (génétique)</term><term>Avastrovirus (isolement et purification)</term><term>Génome viral (génétique)</term><term>Inde</term><term>Poulets</term><term>Similitude de séquences d'acides nucléiques</term><term>Épitopes (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>Epitopes</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Avastrovirus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Avastrovirus</term><term>Genome, Viral</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Avastrovirus</term><term>Génome viral</term><term>Épitopes</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Avastrovirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>Avastrovirus</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Chickens</term><term>India</term><term>Sequence Homology, Nucleic Acid</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Animaux</term><term>Avastrovirus</term><term>Inde</term><term>Poulets</term><term>Similitude de séquences d'acides nucléiques</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Chicken astroviruses have been known to cause severe disease in chickens leading to increased mortality and "white chicks" condition. Here we aim to characterize the causative agent of visceral gout suspected for astrovirus infection in broiler breeder chickens.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">28012117</PMID><DateCompleted><Year>2017</Year><Month>03</Month><Day>10</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1573-7446</ISSN><JournalIssue CitedMedium="Internet"><Volume>41</Volume><Issue>1</Issue><PubDate><Year>2017</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Veterinary research communications</Title><ISOAbbreviation>Vet. Res. Commun.</ISOAbbreviation></Journal><ArticleTitle>Complete genome sequence analysis of chicken astrovirus isolate from India.</ArticleTitle><Pagination><MedlinePgn>67-75</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1007/s11259-016-9673-6</ELocationID><Abstract><AbstractText Label="OBJECTIVE" NlmCategory="OBJECTIVE">Chicken astroviruses have been known to cause severe disease in chickens leading to increased mortality and "white chicks" condition. Here we aim to characterize the causative agent of visceral gout suspected for astrovirus infection in broiler breeder chickens.</AbstractText><AbstractText Label="METHODS" NlmCategory="METHODS">Total RNA isolated from allantoic fluid of SPF embryo passaged with infected chicken sample was sequenced by whole genome shotgun sequencing using ion-torrent PGM platform. The sequence was analysed for the presence of coding and non-coding features, its similarity with reported isolates and epitope analysis of capsid structural protein.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">The consensus length of 7513 bp genome sequence of Indian isolate of chicken astrovirus was obtained after assembly of 14,121 high quality reads. The genome was comprised of 13 bp 5'-UTR, three open reading frames (ORFs) including ORF1a encoding serine protease, ORF1b encoding RNA dependent RNA polymerase (RdRp) and ORF2 encoding capsid protein, and 298 bp of 3'-UTR which harboured two corona virus stem loop II like "s2m" motifs and a poly A stretch of 19 nucleotides. The genetic analysis of CAstV/INDIA/ANAND/2016 suggested highest sequence similarity of 86.94% with the chicken astrovirus isolate CAstV/GA2011 followed by 84.76% with CAstV/4175 and 74.48%% with CAstV/Poland/G059/2014 isolates. The capsid structural protein of CAstV/INDIA/ANAND/2016 showed 84.67% similarity with chicken astrovirus isolate CAstV/GA2011, 81.06% with CAstV/4175 and 41.18% with CAstV/Poland/G059/2014 isolates. However, the capsid protein sequence showed high degree of sequence identity at nucleotide level (98.64-99.32%) and at amino acids level (97.74-98.69%) with reported sequences of Indian isolates suggesting their common origin and limited sequence divergence. The epitope analysis by SVMTriP identified two unique epitopes in our isolate, seven shared epitopes among Indian isolates and two shared epitopes among all isolates except Poland isolate which carried all distinct epitopes.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Patel</LastName><ForeName>Amrutlal K</ForeName><Initials>AK</Initials><AffiliationInfo><Affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India. amrutkpatel@gmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pandit</LastName><ForeName>Ramesh J</ForeName><Initials>RJ</Initials><AffiliationInfo><Affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Thakkar</LastName><ForeName>Jalpa R</ForeName><Initials>JR</Initials><AffiliationInfo><Affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Hinsu</LastName><ForeName>Ankit T</ForeName><Initials>AT</Initials><AffiliationInfo><Affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pandey</LastName><ForeName>Vinod C</ForeName><Initials>VC</Initials><AffiliationInfo><Affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pal</LastName><ForeName>Joy K</ForeName><Initials>JK</Initials><AffiliationInfo><Affiliation>Research and Development, Hester Biosciences Ltd, Ahmedabad, 380006, Gujarat, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Prajapati</LastName><ForeName>Kantilal S</ForeName><Initials>KS</Initials><AffiliationInfo><Affiliation>Department of Veterinary Pathology, Anand Agricultural University, Anand, Gujarat, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Jakhesara</LastName><ForeName>Subhash J</ForeName><Initials>SJ</Initials><AffiliationInfo><Affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Joshi</LastName><ForeName>Chaitanya G</ForeName><Initials>CG</Initials><AffiliationInfo><Affiliation>Department of Animal Biotechnology, Anand Agricultural University, Anand, Gujarat, India.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>12</Month><Day>23</Day></ArticleDate></Article><MedlineJournalInfo><Country>Netherlands</Country><MedlineTA>Vet Res Commun</MedlineTA><NlmUniqueID>8100520</NlmUniqueID><ISSNLinking>0165-7380</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000939">Epitopes</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D052676" MajorTopicYN="N">Avastrovirus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002645" MajorTopicYN="N">Chickens</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000939" MajorTopicYN="N">Epitopes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016679" MajorTopicYN="N">Genome, Viral</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D007194" MajorTopicYN="N">India</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading></MeshHeadingList><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Astrovirus</Keyword><Keyword MajorTopicYN="N">Chicken</Keyword><Keyword MajorTopicYN="N">India</Keyword><Keyword MajorTopicYN="N">Next Generation Sequencing</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2016</Year><Month>11</Month><Day>13</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2016</Year><Month>12</Month><Day>14</Day></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2016</Year><Month>12</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2017</Year><Month>3</Month><Day>11</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>12</Month><Day>25</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">28012117</ArticleId><ArticleId IdType="doi">10.1007/s11259-016-9673-6</ArticleId><ArticleId IdType="pii">10.1007/s11259-016-9673-6</ArticleId></ArticleIdList><ReferenceList><Reference><Citation>Avian Pathol. 2010 Dec;39(6):467-74</Citation><ArticleIdList><ArticleId IdType="pubmed">21154056</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2000 Sep;74(18):8487-93</Citation><ArticleIdList><ArticleId IdType="pubmed">10954549</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 2009 Aug;38(4):293-9</Citation><ArticleIdList><ArticleId IdType="pubmed">19937514</ArticleId></ArticleIdList></Reference><Reference><Citation>Biotechniques. 2000 Jun;28(6):1102, 1104</Citation><ArticleIdList><ArticleId IdType="pubmed">10868275</ArticleId></ArticleIdList></Reference><Reference><Citation>Emerg Infect Dis. 2013;19(9):1385-92</Citation><ArticleIdList><ArticleId IdType="pubmed">23965613</ArticleId></ArticleIdList></Reference><Reference><Citation>Nucleic Acids Res. 2015 Jan;43(Database issue):D130-7</Citation><ArticleIdList><ArticleId IdType="pubmed">25392425</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 1987 Jul;4(4):406-25</Citation><ArticleIdList><ArticleId IdType="pubmed">3447015</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Genes. 2012 Feb;44(1):45-50</Citation><ArticleIdList><ArticleId IdType="pubmed">21879342</ArticleId></ArticleIdList></Reference><Reference><Citation>PLoS One. 2012;7(9):e45152</Citation><ArticleIdList><ArticleId IdType="pubmed">22984622</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Rec. 1984 Mar 17;114(11):279</Citation><ArticleIdList><ArticleId IdType="pubmed">6424324</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2014 Oct;159(10):2823-7</Citation><ArticleIdList><ArticleId IdType="pubmed">24916056</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 1985 Apr;14(2):227-36</Citation><ArticleIdList><ArticleId IdType="pubmed">18766915</ArticleId></ArticleIdList></Reference><Reference><Citation>J Biomed Inform. 2015 Feb;53:405-14</Citation><ArticleIdList><ArticleId IdType="pubmed">25464113</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2008 May;82(10):5099-103</Citation><ArticleIdList><ArticleId IdType="pubmed">18321976</ArticleId></ArticleIdList></Reference><Reference><Citation>Virol J. 2008 Oct 14;5:117</Citation><ArticleIdList><ArticleId IdType="pubmed">18854035</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2016 Sep;161(9):2581-7</Citation><ArticleIdList><ArticleId IdType="pubmed">27339687</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Microbiol. 2000 May 22;74(1-2):3-13</Citation><ArticleIdList><ArticleId IdType="pubmed">10799774</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Rec. 1980 Jun 28;106(26):561</Citation><ArticleIdList><ArticleId IdType="pubmed">6776680</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2012 Mar;50(3):1066-9</Citation><ArticleIdList><ArticleId IdType="pubmed">22189118</ArticleId></ArticleIdList></Reference><Reference><Citation>Poult Sci. 2016 Jun 1;95(6):1262-70</Citation><ArticleIdList><ArticleId IdType="pubmed">26976903</ArticleId></ArticleIdList></Reference><Reference><Citation>Mol Biol Evol. 2013 Dec;30(12):2725-9</Citation><ArticleIdList><ArticleId IdType="pubmed">24132122</ArticleId></ArticleIdList></Reference><Reference><Citation>Poult Sci. 2015 May;94(5):947-54</Citation><ArticleIdList><ArticleId IdType="pubmed">25805833</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 2009 May;90(Pt 5):1104-8</Citation><ArticleIdList><ArticleId IdType="pubmed">19264607</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2015 Jun;160(6):1549-53</Citation><ArticleIdList><ArticleId IdType="pubmed">25824600</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2011 Mar;55(1):65-9</Citation><ArticleIdList><ArticleId IdType="pubmed">21500638</ArticleId></ArticleIdList></Reference><Reference><Citation>Lancet. 1975 Jul 19;2(7925):124</Citation><ArticleIdList><ArticleId IdType="pubmed">49708</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 2010 Nov;91(Pt 11):2719-22</Citation><ArticleIdList><ArticleId IdType="pubmed">20668117</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Rec. 1965 Dec 11;77(50):1529-30</Citation><ArticleIdList><ArticleId IdType="pubmed">5849750</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 2013;42(5):434-42</Citation><ArticleIdList><ArticleId IdType="pubmed">24066895</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2011 Sep;156(9):1559-65</Citation><ArticleIdList><ArticleId IdType="pubmed">21618030</ArticleId></ArticleIdList></Reference><Reference><Citation>Poult Sci. 2011 Dec;90(12):2747-52</Citation><ArticleIdList><ArticleId IdType="pubmed">22080013</ArticleId></ArticleIdList></Reference><Reference><Citation>J Gen Virol. 1998 Apr;79 ( Pt 4):715-8</Citation><ArticleIdList><ArticleId IdType="pubmed">9568965</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 2013;42(5):464-73</Citation><ArticleIdList><ArticleId IdType="pubmed">24015918</ArticleId></ArticleIdList></Reference><Reference><Citation>J Med Virol. 1982;9(4):257-65</Citation><ArticleIdList><ArticleId IdType="pubmed">6286860</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 2004 Jun;33(3):364-70</Citation><ArticleIdList><ArticleId IdType="pubmed">15223568</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2012 Dec;86(24):13833-4</Citation><ArticleIdList><ArticleId IdType="pubmed">23166244</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 1981;70(4):373-6</Citation><ArticleIdList><ArticleId IdType="pubmed">6798953</ArticleId></ArticleIdList></Reference><Reference><Citation>Transbound Emerg Dis. 2016 Jun;63(3):253-9</Citation><ArticleIdList><ArticleId IdType="pubmed">26948516</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2008 Jun;52(2):235-44</Citation><ArticleIdList><ArticleId IdType="pubmed">18646452</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 2016;45(1):2-12</Citation><ArticleIdList><ArticleId IdType="pubmed">26514927</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 1991 Jan-Mar;35(1):49-54</Citation><ArticleIdList><ArticleId IdType="pubmed">1851420</ArticleId></ArticleIdList></Reference><Reference><Citation>J Clin Microbiol. 2014 Sep;52(9):3318-24</Citation><ArticleIdList><ArticleId IdType="pubmed">24989603</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2007 Oct;81(19):10649-58</Citation><ArticleIdList><ArticleId IdType="pubmed">17652389</ArticleId></ArticleIdList></Reference><Reference><Citation>Virol J. 2013 Apr 25;10:132</Citation><ArticleIdList><ArticleId IdType="pubmed">23618040</ArticleId></ArticleIdList></Reference><Reference><Citation>J Virol. 2000 Jul;74(13):6173-7</Citation><ArticleIdList><ArticleId IdType="pubmed">10846102</ArticleId></ArticleIdList></Reference><Reference><Citation>Arch Virol. 2012 Feb;157(2):323-7</Citation><ArticleIdList><ArticleId IdType="pubmed">22033597</ArticleId></ArticleIdList></Reference><Reference><Citation>Virus Res. 2003 Feb;91(2):195-201</Citation><ArticleIdList><ArticleId IdType="pubmed">12573498</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Pathol. 2009 Aug;38(4):301-9</Citation><ArticleIdList><ArticleId IdType="pubmed">19937515</ArticleId></ArticleIdList></Reference><Reference><Citation>Vet Rec. 2013 Oct 26;173(16):403-4</Citation><ArticleIdList><ArticleId IdType="pubmed">24163046</ArticleId></ArticleIdList></Reference><Reference><Citation>Genome Announc. 2013 Sep 26;1(5):null</Citation><ArticleIdList><ArticleId IdType="pubmed">24072858</ArticleId></ArticleIdList></Reference><Reference><Citation>Avian Dis. 2001 Jan-Mar;45(1):76-82</Citation><ArticleIdList><ArticleId IdType="pubmed">11332502</ArticleId></ArticleIdList></Reference></ReferenceList></PubmedData></pubmed><affiliations><list><country><li>Inde</li></country></list><tree><country name="Inde"><noRegion><name sortKey="Patel, Amrutlal K" sort="Patel, Amrutlal K" uniqKey="Patel A" first="Amrutlal K" last="Patel">Amrutlal K. Patel</name></noRegion><name sortKey="Hinsu, Ankit T" sort="Hinsu, Ankit T" uniqKey="Hinsu A" first="Ankit T" last="Hinsu">Ankit T. Hinsu</name><name sortKey="Jakhesara, Subhash J" sort="Jakhesara, Subhash J" uniqKey="Jakhesara S" first="Subhash J" last="Jakhesara">Subhash J. Jakhesara</name><name sortKey="Joshi, Chaitanya G" sort="Joshi, Chaitanya G" uniqKey="Joshi C" first="Chaitanya G" last="Joshi">Chaitanya G. Joshi</name><name sortKey="Pal, Joy K" sort="Pal, Joy K" uniqKey="Pal J" first="Joy K" last="Pal">Joy K. Pal</name><name sortKey="Pandey, Vinod C" sort="Pandey, Vinod C" uniqKey="Pandey V" first="Vinod C" last="Pandey">Vinod C. Pandey</name><name sortKey="Pandit, Ramesh J" sort="Pandit, Ramesh J" uniqKey="Pandit R" first="Ramesh J" last="Pandit">Ramesh J. Pandit</name><name sortKey="Prajapati, Kantilal S" sort="Prajapati, Kantilal S" uniqKey="Prajapati K" first="Kantilal S" last="Prajapati">Kantilal S. Prajapati</name><name sortKey="Thakkar, Jalpa R" sort="Thakkar, Jalpa R" uniqKey="Thakkar J" first="Jalpa R" last="Thakkar">Jalpa R. Thakkar</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Sante/explor/CovidV1/Data/Ncbi/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000598 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd -nk 000598 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Sante
|area= CovidV1
|flux= Ncbi
|étape= Merge
|type= RBID
|clé= pubmed:28012117
|texte= Complete genome sequence analysis of chicken astrovirus isolate from India.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/RBID.i -Sk "pubmed:28012117" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd \
| NlmPubMed2Wicri -a CovidV1
| This area was generated with Dilib version V0.6.33. |  |