Comparative analyses of the nucleocapsid genes of several strains of infectious bronchitis virus and other coronaviruses
Identifieur interne : 000541 ( Istex/Corpus ); précédent : 000540; suivant : 000542Comparative analyses of the nucleocapsid genes of several strains of infectious bronchitis virus and other coronaviruses
Auteurs : Anna K. Williams ; Wang Li ; Loyd W. Sneed ; Ellen W. CollissonSource :
- Virus Research [ 0168-1702 ] ; 1992.
English descriptors
- Teeft :
- Amino, Amino acid sequences, Antigenic, Antigenic groups, Avian, Avian coronavirus, Beaud, Beaudette, Bronchitis, Bronchitis virus, Coronavirus, Coronaviruses, Ethanol precipitation, Genome, Infectious bronchitis, Infectious bronchitis virus, Major antigenic groups, Nucleocapsid, Nucleocapsid gene, Nucleocapsid genes, Nucleocapsid protein, Nucleocapsid proteins, Other coronaviruses, Phylogenetic, Phylogenetic tree, Sequence analysis, Sequencing data, Structural proteins, Viral, Virol.
Abstract
Abstract: The natural sequence variations of the nucleocapsid genes of the Gray, Arkansas99 (Ark99), and Holland52 (Holl52) strains of infectious bronchitis virus (IBV) were determined. These were compared with previously published sequencing data of other IBV strains, as well as other coronaviruses, in order to correlate the serological and evolutionary relationship of coronaviruses. IBV nucleotide sequence alignment shows that overall the sequences are highly conserved, with homologies from 91.1 to 96.5%. However, there are also two regions (730 to 800 and 1138 to 1166) that appear to be even more highly conserved. Overall, the nucleocapsid protein is highly variable both in size and composition between coronavirus major antigenic groups but is conserved within these groups. A phylogenetic tree of the nucleocapsid protein of various coronaviruses indicates that the coronaviruses fall into distinct groups that correspond to the three major antigenic groups; however, a phylogenetic tree of the IBV nucleocapsid shows that this does not hold true for the type specific antigenic groups of IBV.
Url:
DOI: 10.1016/0168-1702(92)90135-V
Links to Exploration step
ISTEX:4DA1DEC5C09F2118B5A86B3BBA67FC369A9BEC59Le document en format XML
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Williams</name><affiliation><mods:affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</mods:affiliation></affiliation></author><author><name sortKey="Li, Wang" sort="Li, Wang" uniqKey="Li W" first="Wang" last="Li">Wang Li</name><affiliation><mods:affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</mods:affiliation></affiliation></author><author><name sortKey="Sneed, Loyd W" sort="Sneed, Loyd W" uniqKey="Sneed L" first="Loyd W." last="Sneed">Loyd W. Sneed</name><affiliation><mods:affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</mods:affiliation></affiliation></author><author><name sortKey="Collisson, Ellen W" sort="Collisson, Ellen W" uniqKey="Collisson E" first="Ellen W." last="Collisson">Ellen W. Collisson</name><affiliation><mods:affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</mods:affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j">Virus Research</title><title level="j" type="abbrev">VIRUS</title><idno type="ISSN">0168-1702</idno><imprint><publisher>ELSEVIER</publisher><date type="published" when="1992">1992</date><biblScope unit="volume">25</biblScope><biblScope unit="issue">3</biblScope><biblScope unit="page" from="213">213</biblScope><biblScope unit="page" to="222">222</biblScope></imprint><idno type="ISSN">0168-1702</idno></series></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0168-1702</idno></seriesStmt></fileDesc><profileDesc><textClass><keywords scheme="Teeft" xml:lang="en"><term>Amino</term><term>Amino acid sequences</term><term>Antigenic</term><term>Antigenic groups</term><term>Avian</term><term>Avian coronavirus</term><term>Beaud</term><term>Beaudette</term><term>Bronchitis</term><term>Bronchitis virus</term><term>Coronavirus</term><term>Coronaviruses</term><term>Ethanol precipitation</term><term>Genome</term><term>Infectious bronchitis</term><term>Infectious bronchitis virus</term><term>Major antigenic groups</term><term>Nucleocapsid</term><term>Nucleocapsid gene</term><term>Nucleocapsid genes</term><term>Nucleocapsid protein</term><term>Nucleocapsid proteins</term><term>Other coronaviruses</term><term>Phylogenetic</term><term>Phylogenetic tree</term><term>Sequence analysis</term><term>Sequencing data</term><term>Structural proteins</term><term>Viral</term><term>Virol</term></keywords></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Abstract: The natural sequence variations of the nucleocapsid genes of the Gray, Arkansas99 (Ark99), and Holland52 (Holl52) strains of infectious bronchitis virus (IBV) were determined. These were compared with previously published sequencing data of other IBV strains, as well as other coronaviruses, in order to correlate the serological and evolutionary relationship of coronaviruses. IBV nucleotide sequence alignment shows that overall the sequences are highly conserved, with homologies from 91.1 to 96.5%. However, there are also two regions (730 to 800 and 1138 to 1166) that appear to be even more highly conserved. Overall, the nucleocapsid protein is highly variable both in size and composition between coronavirus major antigenic groups but is conserved within these groups. 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Williams</name><affiliations><json:string>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</json:string></affiliations></json:item><json:item><name>Wang Li</name><affiliations><json:string>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</json:string></affiliations></json:item><json:item><name>Loyd W. Sneed</name><affiliations><json:string>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</json:string></affiliations></json:item><json:item><name>Ellen W. 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These were compared with previously published sequencing data of other IBV strains, as well as other coronaviruses, in order to correlate the serological and evolutionary relationship of coronaviruses. IBV nucleotide sequence alignment shows that overall the sequences are highly conserved, with homologies from 91.1 to 96.5%. However, there are also two regions (730 to 800 and 1138 to 1166) that appear to be even more highly conserved. Overall, the nucleocapsid protein is highly variable both in size and composition between coronavirus major antigenic groups but is conserved within these groups. A phylogenetic tree of the nucleocapsid protein of various coronaviruses indicates that the coronaviruses fall into distinct groups that correspond to the three major antigenic groups; however, a phylogenetic tree of the IBV nucleocapsid shows that this does not hold true for the type specific antigenic groups of IBV.</abstract><qualityIndicators><score>6.747</score><pdfWordCount>2779</pdfWordCount><pdfCharCount>18534</pdfCharCount><pdfVersion>1.2</pdfVersion><pdfPageCount>10</pdfPageCount><pdfPageSize>432 x 648 pts</pdfPageSize><refBibsNative>true</refBibsNative><abstractWordCount>164</abstractWordCount><abstractCharCount>1107</abstractCharCount><keywordCount>3</keywordCount></qualityIndicators><title>Comparative analyses of the nucleocapsid genes of several strains of infectious bronchitis virus and other coronaviruses</title><pmid><json:string>1332275</json:string></pmid><pii><json:string>0168-1702(92)90135-V</json:string></pii><genre><json:string>research-article</json:string></genre><host><title>Virus Research</title><language><json:string>unknown</json:string></language><publicationDate>1992</publicationDate><issn><json:string>0168-1702</json:string></issn><pii><json:string>S0168-1702(00)X0172-4</json:string></pii><volume>25</volume><issue>3</issue><pages><first>213</first><last>222</last></pages><genre><json:string>journal</json:string></genre></host><namedEntities><unitex><date><json:string>1992</json:string></date><geogName></geogName><orgName><json:string>Department of Veterinary Pathobiology, Medicine, Texas A</json:string><json:string>University of Wisconsin Genetics Computer Group</json:string><json:string>Southeastern Poultry and Egg Association</json:string></orgName><orgName_funder><json:string>Southeastern Poultry and Egg Association</json:string></orgName_funder><orgName_provider></orgName_provider><persName><json:string>Peggy M. 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Collisson, Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA.</p></note><affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</affiliation></author><idno type="istex">4DA1DEC5C09F2118B5A86B3BBA67FC369A9BEC59</idno><idno type="ark">ark:/67375/6H6-54N74VF7-3</idno><idno type="DOI">10.1016/0168-1702(92)90135-V</idno><idno type="PII">0168-1702(92)90135-V</idno></analytic><monogr><title level="j">Virus Research</title><title level="j" type="abbrev">VIRUS</title><idno type="pISSN">0168-1702</idno><idno type="PII">S0168-1702(00)X0172-4</idno><imprint><publisher>ELSEVIER</publisher><date type="published" when="1992"></date><biblScope unit="volume">25</biblScope><biblScope unit="issue">3</biblScope><biblScope unit="page" from="213">213</biblScope><biblScope unit="page" to="222">222</biblScope></imprint></monogr></biblStruct></sourceDesc></fileDesc><profileDesc><creation><date>1992</date></creation><langUsage><language ident="en">en</language></langUsage><abstract xml:lang="en"><p>Abstract: The natural sequence variations of the nucleocapsid genes of the Gray, Arkansas99 (Ark99), and Holland52 (Holl52) strains of infectious bronchitis virus (IBV) were determined. These were compared with previously published sequencing data of other IBV strains, as well as other coronaviruses, in order to correlate the serological and evolutionary relationship of coronaviruses. IBV nucleotide sequence alignment shows that overall the sequences are highly conserved, with homologies from 91.1 to 96.5%. However, there are also two regions (730 to 800 and 1138 to 1166) that appear to be even more highly conserved. Overall, the nucleocapsid protein is highly variable both in size and composition between coronavirus major antigenic groups but is conserved within these groups. A phylogenetic tree of the nucleocapsid protein of various coronaviruses indicates that the coronaviruses fall into distinct groups that correspond to the three major antigenic groups; however, a phylogenetic tree of the IBV nucleocapsid shows that this does not hold true for the type specific antigenic groups of IBV.</p></abstract><textClass><keywords scheme="keyword"><list><head>Keywords</head><item><term>Nucleocapsid gene</term></item><item><term>Infectious bronchitis</term></item><item><term>Coronavirus</term></item></list></keywords></textClass></profileDesc><revisionDesc><change when="1992-06-04">Modified</change><change when="1992">Published</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><extension>txt</extension><original>false</original><mimetype>text/plain</mimetype><uri>https://api.istex.fr/ark:/67375/6H6-54N74VF7-3/fulltext.txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="Elsevier, elements deleted: tail"><istex:xmlDeclaration>version="1.0" encoding="utf-8"</istex:xmlDeclaration><istex:docType PUBLIC="-//ES//DTD journal article DTD version 4.5.2//EN//XML" URI="art452.dtd" name="istex:docType"></istex:docType><istex:document><converted-article version="4.5.2" docsubtype="fla"><item-info><jid>VIRUS</jid><aid>9290135V</aid><ce:pii>0168-1702(92)90135-V</ce:pii><ce:doi>10.1016/0168-1702(92)90135-V</ce:doi><ce:copyright type="unknown" year="1992"></ce:copyright></item-info><head><ce:title>Comparative analyses of the nucleocapsid genes of several strains of infectious bronchitis virus and other coronaviruses</ce:title><ce:author-group><ce:author><ce:given-name>Anna K.</ce:given-name><ce:surname>Williams</ce:surname></ce:author><ce:author><ce:surname>Li</ce:surname><ce:given-name>Wang</ce:given-name></ce:author><ce:author><ce:given-name>Loyd W.</ce:given-name><ce:surname>Sneed</ce:surname></ce:author><ce:author><ce:given-name>Ellen W.</ce:given-name><ce:surname>Collisson</ce:surname><ce:cross-ref refid="COR1"><ce:sup>∗</ce:sup></ce:cross-ref></ce:author><ce:affiliation><ce:textfn>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</ce:textfn></ce:affiliation><ce:correspondence id="COR1"><ce:label>∗</ce:label><ce:text>Correspondence to: E.W. Collisson, Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA.</ce:text></ce:correspondence></ce:author-group><ce:date-received day="8" month="4" year="1992"></ce:date-received><ce:date-revised day="4" month="6" year="1992"></ce:date-revised><ce:date-accepted day="4" month="6" year="1992"></ce:date-accepted><ce:abstract><ce:section-title>Abstract</ce:section-title><ce:abstract-sec><ce:simple-para>The natural sequence variations of the nucleocapsid genes of the Gray, Arkansas99 (Ark99), and Holland52 (Holl52) strains of infectious bronchitis virus (IBV) were determined. These were compared with previously published sequencing data of other IBV strains, as well as other coronaviruses, in order to correlate the serological and evolutionary relationship of coronaviruses. IBV nucleotide sequence alignment shows that overall the sequences are highly conserved, with homologies from 91.1 to 96.5%. However, there are also two regions (730 to 800 and 1138 to 1166) that appear to be even more highly conserved. Overall, the nucleocapsid protein is highly variable both in size and composition between coronavirus major antigenic groups but is conserved within these groups. A phylogenetic tree of the nucleocapsid protein of various coronaviruses indicates that the coronaviruses fall into distinct groups that correspond to the three major antigenic groups; however, a phylogenetic tree of the IBV nucleocapsid shows that this does not hold true for the type specific antigenic groups of IBV.</ce:simple-para></ce:abstract-sec></ce:abstract><ce:keywords><ce:section-title>Keywords</ce:section-title><ce:keyword><ce:text>Nucleocapsid gene</ce:text></ce:keyword><ce:keyword><ce:text>Infectious bronchitis</ce:text></ce:keyword><ce:keyword><ce:text>Coronavirus</ce:text></ce:keyword></ce:keywords></head></converted-article></istex:document></istex:metadataXml><mods version="3.6"><titleInfo><title>Comparative analyses of the nucleocapsid genes of several strains of infectious bronchitis virus and other coronaviruses</title></titleInfo><titleInfo type="alternative" contentType="CDATA"><title>Comparative analyses of the nucleocapsid genes of several strains of infectious bronchitis virus and other coronaviruses</title></titleInfo><name type="personal"><namePart type="given">Anna K.</namePart><namePart type="family">Williams</namePart><affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Wang</namePart><namePart type="family">Li</namePart><affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Loyd W.</namePart><namePart type="family">Sneed</namePart><affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Ellen W.</namePart><namePart type="family">Collisson</namePart><affiliation>Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA</affiliation><description>Correspondence to: E.W. Collisson, Department of Veterinary Pathobiology, College of Veterinary Medicine, Texas A&M University, College Station, TX 77843, USA.</description><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="research-article" displayLabel="Full-length article" authority="ISTEX" authorityURI="https://content-type.data.istex.fr" valueURI="https://content-type.data.istex.fr/ark:/67375/XTP-1JC4F85T-7">research-article</genre><originInfo><publisher>ELSEVIER</publisher><dateIssued encoding="w3cdtf">1992</dateIssued><dateModified encoding="w3cdtf">1992-06-04</dateModified><copyrightDate encoding="w3cdtf">1992</copyrightDate></originInfo><language><languageTerm type="code" authority="iso639-2b">eng</languageTerm><languageTerm type="code" authority="rfc3066">en</languageTerm></language><abstract lang="en">Abstract: The natural sequence variations of the nucleocapsid genes of the Gray, Arkansas99 (Ark99), and Holland52 (Holl52) strains of infectious bronchitis virus (IBV) were determined. These were compared with previously published sequencing data of other IBV strains, as well as other coronaviruses, in order to correlate the serological and evolutionary relationship of coronaviruses. IBV nucleotide sequence alignment shows that overall the sequences are highly conserved, with homologies from 91.1 to 96.5%. However, there are also two regions (730 to 800 and 1138 to 1166) that appear to be even more highly conserved. Overall, the nucleocapsid protein is highly variable both in size and composition between coronavirus major antigenic groups but is conserved within these groups. A phylogenetic tree of the nucleocapsid protein of various coronaviruses indicates that the coronaviruses fall into distinct groups that correspond to the three major antigenic groups; however, a phylogenetic tree of the IBV nucleocapsid shows that this does not hold true for the type specific antigenic groups of IBV.</abstract><subject><genre>Keywords</genre><topic>Nucleocapsid gene</topic><topic>Infectious bronchitis</topic><topic>Coronavirus</topic></subject><relatedItem type="host"><titleInfo><title>Virus Research</title></titleInfo><titleInfo type="abbreviated"><title>VIRUS</title></titleInfo><genre type="journal" authority="ISTEX" authorityURI="https://publication-type.data.istex.fr" valueURI="https://publication-type.data.istex.fr/ark:/67375/JMC-0GLKJH51-B">journal</genre><originInfo><publisher>ELSEVIER</publisher><dateIssued encoding="w3cdtf">1992</dateIssued></originInfo><identifier type="ISSN">0168-1702</identifier><identifier type="PII">S0168-1702(00)X0172-4</identifier><part><date>1992</date><detail type="volume"><number>25</number><caption>vol.</caption></detail><detail type="issue"><number>3</number><caption>no.</caption></detail><extent unit="issue-pages"><start>159</start><end>260</end></extent><extent unit="pages"><start>213</start><end>222</end></extent></part></relatedItem><identifier type="istex">4DA1DEC5C09F2118B5A86B3BBA67FC369A9BEC59</identifier><identifier type="ark">ark:/67375/6H6-54N74VF7-3</identifier><identifier type="DOI">10.1016/0168-1702(92)90135-V</identifier><identifier type="PII">0168-1702(92)90135-V</identifier><recordInfo><recordContentSource authority="ISTEX" authorityURI="https://loaded-corpus.data.istex.fr" valueURI="https://loaded-corpus.data.istex.fr/ark:/67375/XBH-HKKZVM7B-M">elsevier</recordContentSource></recordInfo></mods><json:item><extension>json</extension><original>false</original><mimetype>application/json</mimetype><uri>https://api.istex.fr/ark:/67375/6H6-54N74VF7-3/record.json</uri></json:item></metadata><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
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