Molecular prevalence of bovine noroviruses and neboviruses detected in central-eastern Tunisia
Identifieur interne : 000480 ( Istex/Corpus ); précédent : 000479; suivant : 000481Molecular prevalence of bovine noroviruses and neboviruses detected in central-eastern Tunisia
Auteurs : Mouna Hassine-Zaafrane ; Jérôme Kaplon ; Khira Sdiri-Loulizi ; Zaydoun Aouni ; Pierre Pothier ; Mahjoub Aouni ; Katia Ambert-BalaySource :
- Archives of Virology [ 0304-8608 ] ; 2012-08-01.
Abstract
Abstract: Two genetically distinct bovine enteric caliciviruses are known: noroviruses of genogroup III (NoVsGIII), which are genetically related to human noroviruses, and neboviruses, which represent a new calicivirus genus. To investigate the presence of NoVsGIII and nebovirus strains in diarrheic calves in Tunisia, a total of 169 faecal specimens were collected from January 2006 to October 2010 from different cattle herds located in the central-east regions. RT-PCRs and sequencing were carried out using primers targeting the 3′ end of the polymerase gene of NoVsGIII and neboviruses. This study revealed that NoVsGIII and nebovirus are endemic in diarrheic calves in Tunisia. NoVsGIII infections, all with genotype 2, had an apparent molecular prevalence of 16.6 % and were more frequent than nebovirus infections. NoVsGIII infections showed clear seasonality, with a peak in winter. Nebovirus infections, with a prevalence of 3.0 %, were all related to the reference strain Bo/Nebraska/80/US.
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DOI: 10.1007/s00705-012-1344-5
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To investigate the presence of NoVsGIII and nebovirus strains in diarrheic calves in Tunisia, a total of 169 faecal specimens were collected from January 2006 to October 2010 from different cattle herds located in the central-east regions. RT-PCRs and sequencing were carried out using primers targeting the 3′ end of the polymerase gene of NoVsGIII and neboviruses. This study revealed that NoVsGIII and nebovirus are endemic in diarrheic calves in Tunisia. NoVsGIII infections, all with genotype 2, had an apparent molecular prevalence of 16.6 % and were more frequent than nebovirus infections. NoVsGIII infections showed clear seasonality, with a peak in winter. Nebovirus infections, with a prevalence of 3.0 %, were all related to the reference strain Bo/Nebraska/80/US.</div></front></TEI><istex><corpusName>springer-journals</corpusName><author><json:item><name>Mouna Hassine-Zaafrane</name><affiliations><json:string>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</json:string><json:string>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</json:string><json:string>E-mail: mouna20781@yahoo.fr</json:string></affiliations></json:item><json:item><name>Jérôme Kaplon</name><affiliations><json:string>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</json:string></affiliations></json:item><json:item><name>Khira Sdiri-Loulizi</name><affiliations><json:string>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</json:string></affiliations></json:item><json:item><name>Zaydoun Aouni</name><affiliations><json:string>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</json:string></affiliations></json:item><json:item><name>Pierre Pothier</name><affiliations><json:string>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</json:string></affiliations></json:item><json:item><name>Mahjoub Aouni</name><affiliations><json:string>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</json:string></affiliations></json:item><json:item><name>Katia Ambert-Balay</name><affiliations><json:string>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</json:string></affiliations></json:item></author><articleId><json:string>1344</json:string><json:string>s00705-012-1344-5</json:string></articleId><arkIstex>ark:/67375/VQC-4986RG40-1</arkIstex><language><json:string>eng</json:string></language><originalGenre><json:string>Report</json:string></originalGenre><abstract>Abstract: Two genetically distinct bovine enteric caliciviruses are known: noroviruses of genogroup III (NoVsGIII), which are genetically related to human noroviruses, and neboviruses, which represent a new calicivirus genus. To investigate the presence of NoVsGIII and nebovirus strains in diarrheic calves in Tunisia, a total of 169 faecal specimens were collected from January 2006 to October 2010 from different cattle herds located in the central-east regions. RT-PCRs and sequencing were carried out using primers targeting the 3′ end of the polymerase gene of NoVsGIII and neboviruses. This study revealed that NoVsGIII and nebovirus are endemic in diarrheic calves in Tunisia. NoVsGIII infections, all with genotype 2, had an apparent molecular prevalence of 16.6 % and were more frequent than nebovirus infections. NoVsGIII infections showed clear seasonality, with a peak in winter. 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DisplayOrder="Western"><GivenName>Zaydoun</GivenName><FamilyName>Aouni</FamilyName></AuthorName></Author><Author AffiliationIDS="Aff2"><AuthorName DisplayOrder="Western"><GivenName>Pierre</GivenName><FamilyName>Pothier</FamilyName></AuthorName></Author><Author AffiliationIDS="Aff1"><AuthorName DisplayOrder="Western"><GivenName>Mahjoub</GivenName><FamilyName>Aouni</FamilyName></AuthorName></Author><Author AffiliationIDS="Aff2"><AuthorName DisplayOrder="Western"><GivenName>Katia</GivenName><FamilyName>Ambert-Balay</FamilyName></AuthorName></Author><Affiliation ID="Aff1"><OrgDivision>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy</OrgDivision><OrgName>University of Monastir</OrgName><OrgAddress><Postcode>5000</Postcode><City>Monastir</City><Country Code="TN">Tunisia</Country></OrgAddress></Affiliation><Affiliation ID="Aff2"><OrgDivision>Laboratory of Virology, National Reference Centre for Enteric Viruses</OrgDivision><OrgName>CHU of Dijon, University of Bourgogne</OrgName><OrgAddress><Street>2 Rue Angélique Ducoudray</Street><Postcode>21000</Postcode><City>Dijon</City><Country Code="FR">France</Country></OrgAddress></Affiliation></AuthorGroup><Abstract ID="Abs1" Language="En" OutputMedium="All"><Heading>Abstract</Heading><Para>Two genetically distinct bovine enteric caliciviruses are known: noroviruses of genogroup III (NoVsGIII), which are genetically related to human noroviruses, and neboviruses, which represent a new calicivirus genus. To investigate the presence of NoVsGIII and nebovirus strains in diarrheic calves in Tunisia, a total of 169 faecal specimens were collected from January 2006 to October 2010 from different cattle herds located in the central-east regions. RT-PCRs and sequencing were carried out using primers targeting the 3′ end of the polymerase gene of NoVsGIII and neboviruses. This study revealed that NoVsGIII and nebovirus are endemic in diarrheic calves in Tunisia. NoVsGIII infections, all with genotype 2, had an apparent molecular prevalence of 16.6 % and were more frequent than nebovirus infections. NoVsGIII infections showed clear seasonality, with a peak in winter. Nebovirus infections, with a prevalence of 3.0 %, were all related to the reference strain Bo/Nebraska/80/US.</Para></Abstract><ArticleNote Type="Misc"><SimplePara>Nucleotide sequence data reported are available in the GenBank database under accession numbers JN418477-JN418492.</SimplePara></ArticleNote></ArticleHeader><NoBody></NoBody></Article></Issue></Volume></Journal></Publisher></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>Molecular prevalence of bovine noroviruses and neboviruses detected in central-eastern Tunisia</title></titleInfo><titleInfo type="alternative" contentType="CDATA"><title>Molecular prevalence of bovine noroviruses and neboviruses detected in central-eastern Tunisia</title></titleInfo><name type="personal" displayLabel="corresp"><namePart type="given">Mouna</namePart><namePart type="family">Hassine-Zaafrane</namePart><affiliation>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</affiliation><affiliation>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</affiliation><affiliation>E-mail: mouna20781@yahoo.fr</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Jérôme</namePart><namePart type="family">Kaplon</namePart><affiliation>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Khira</namePart><namePart type="family">Sdiri-Loulizi</namePart><affiliation>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Zaydoun</namePart><namePart type="family">Aouni</namePart><affiliation>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Pierre</namePart><namePart type="family">Pothier</namePart><affiliation>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Mahjoub</namePart><namePart type="family">Aouni</namePart><affiliation>Laboratory of Infectious Diseases and Biological Agents, Faculty of Pharmacy, University of Monastir, 5000, Monastir, Tunisia</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Katia</namePart><namePart type="family">Ambert-Balay</namePart><affiliation>Laboratory of Virology, National Reference Centre for Enteric Viruses, CHU of Dijon, University of Bourgogne, 2 Rue Angélique Ducoudray, 21000, Dijon, France</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="research-article" displayLabel="Report" authority="ISTEX" authorityURI="https://content-type.data.istex.fr" valueURI="https://content-type.data.istex.fr/ark:/67375/XTP-1JC4F85T-7">research-article</genre><originInfo><publisher>Springer Vienna</publisher><place><placeTerm type="text">Vienna</placeTerm></place><dateCreated encoding="w3cdtf">2012-01-31</dateCreated><dateIssued encoding="w3cdtf">2012-08-01</dateIssued><copyrightDate encoding="w3cdtf">2012</copyrightDate></originInfo><language><languageTerm type="code" authority="rfc3066">en</languageTerm><languageTerm type="code" authority="iso639-2b">eng</languageTerm></language><abstract lang="en">Abstract: Two genetically distinct bovine enteric caliciviruses are known: noroviruses of genogroup III (NoVsGIII), which are genetically related to human noroviruses, and neboviruses, which represent a new calicivirus genus. To investigate the presence of NoVsGIII and nebovirus strains in diarrheic calves in Tunisia, a total of 169 faecal specimens were collected from January 2006 to October 2010 from different cattle herds located in the central-east regions. RT-PCRs and sequencing were carried out using primers targeting the 3′ end of the polymerase gene of NoVsGIII and neboviruses. This study revealed that NoVsGIII and nebovirus are endemic in diarrheic calves in Tunisia. NoVsGIII infections, all with genotype 2, had an apparent molecular prevalence of 16.6 % and were more frequent than nebovirus infections. NoVsGIII infections showed clear seasonality, with a peak in winter. Nebovirus infections, with a prevalence of 3.0 %, were all related to the reference strain Bo/Nebraska/80/US.</abstract><note>Brief Report</note><relatedItem type="host"><titleInfo><title>Archives of Virology</title><subTitle>Official Journal of the Virology Division of the International Union of Microbiological Societies</subTitle></titleInfo><titleInfo type="abbreviated"><title>Arch Virol</title></titleInfo><genre type="journal" authority="ISTEX" authorityURI="https://publication-type.data.istex.fr" valueURI="https://publication-type.data.istex.fr/ark:/67375/JMC-0GLKJH51-B">journal</genre><originInfo><publisher>Springer</publisher><dateIssued encoding="w3cdtf">2012-07-28</dateIssued><copyrightDate encoding="w3cdtf">2012</copyrightDate></originInfo><subject><genre>Biomedicine</genre><topic>Virology</topic><topic>Medical Microbiology</topic><topic>Infectious Diseases</topic></subject><identifier type="ISSN">0304-8608</identifier><identifier type="eISSN">1432-8798</identifier><identifier type="JournalID">705</identifier><identifier type="IssueArticleCount">26</identifier><identifier type="VolumeIssueCount">12</identifier><part><date>2012</date><detail type="volume"><number>157</number><caption>vol.</caption></detail><detail type="issue"><number>8</number><caption>no.</caption></detail><extent unit="pages"><start>1599</start><end>1604</end></extent></part><recordInfo><recordOrigin>Springer-Verlag, 2012</recordOrigin></recordInfo></relatedItem><identifier type="istex">45826125272CE3E37B3BB66A8DA132D6A6BD5E29</identifier><identifier type="ark">ark:/67375/VQC-4986RG40-1</identifier><identifier type="DOI">10.1007/s00705-012-1344-5</identifier><identifier type="ArticleID">1344</identifier><identifier type="ArticleID">s00705-012-1344-5</identifier><accessCondition type="use and reproduction" contentType="copyright">Springer-Verlag, 2012</accessCondition><recordInfo><recordContentSource authority="ISTEX" authorityURI="https://loaded-corpus.data.istex.fr" valueURI="https://loaded-corpus.data.istex.fr/ark:/67375/XBH-3XSW68JL-F">springer</recordContentSource><recordOrigin>Springer-Verlag, 2012</recordOrigin></recordInfo></mods><json:item><extension>json</extension><original>false</original><mimetype>application/json</mimetype><uri>https://api.istex.fr/ark:/67375/VQC-4986RG40-1/record.json</uri></json:item></metadata><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
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