Serveur d'exploration sur le Covid à Stanford

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.

Identifieur interne : 000593 ( Main/Corpus ); précédent : 000592; suivant : 000594

A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.

Auteurs : Rohan P. Joshi ; Vikas Pejaver ; Noah E. Hammarlund ; Heungsup Sung ; Seong Kyu Lee ; Al'Ona Furmanchuk ; Hye-Young Lee ; Gregory Scott ; Saurabh Gombar ; Nigam Shah ; Sam Shen ; Anna Nassiri ; Daniel Schneider ; Faraz S. Ahmad ; David Liebovitz ; Abel Kho ; Sean Mooney ; Benjamin A. Pinsky ; Niaz Banaei

Source :

RBID : pubmed:32544861

English descriptors

Abstract

BACKGROUND

Testing for COVID-19 remains limited in the United States and across the world. Poor allocation of limited testing resources leads to misutilization of health system resources, which complementary rapid testing tools could ameliorate.

OBJECTIVE

To predict SARS-CoV-2 PCR positivity based on complete blood count components and patient sex.

STUDY DESIGN

A retrospective case-control design for collection of data and a logistic regression prediction model was used. Participants were emergency department patients > 18 years old who had concurrent complete blood counts and SARS-CoV-2 PCR testing. 33 confirmed SARS-CoV-2 PCR positive and 357 negative patients at Stanford Health Care were used for model training. Validation cohorts consisted of emergency department patients > 18 years old who had concurrent complete blood counts and SARS-CoV-2 PCR testing in Northern California (41 PCR positive, 495 PCR negative), Seattle, Washington (40 PCR positive, 306 PCR negative), Chicago, Illinois (245 PCR positive, 1015 PCR negative), and South Korea (9 PCR positive, 236 PCR negative).

RESULTS

A decision support tool that utilizes components of complete blood count and patient sex for prediction of SARS-CoV-2 PCR positivity demonstrated a C-statistic of 78 %, an optimized sensitivity of 93 %, and generalizability to other emergency department populations. By restricting PCR testing to predicted positive patients in a hypothetical scenario of 1000 patients requiring testing but testing resources limited to 60 % of patients, this tool would allow a 33 % increase in properly allocated resources.

CONCLUSIONS

A prediction tool based on complete blood count results can better allocate SARS-CoV-2 testing and other health care resources such as personal protective equipment during a pandemic surge.


DOI: 10.1016/j.jcv.2020.104502
PubMed: 32544861
PubMed Central: PMC7286235

Links to Exploration step

pubmed:32544861

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.</title>
<author>
<name sortKey="Joshi, Rohan P" sort="Joshi, Rohan P" uniqKey="Joshi R" first="Rohan P" last="Joshi">Rohan P. Joshi</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Pejaver, Vikas" sort="Pejaver, Vikas" uniqKey="Pejaver V" first="Vikas" last="Pejaver">Vikas Pejaver</name>
<affiliation>
<nlm:affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Hammarlund, Noah E" sort="Hammarlund, Noah E" uniqKey="Hammarlund N" first="Noah E" last="Hammarlund">Noah E. Hammarlund</name>
<affiliation>
<nlm:affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Sung, Heungsup" sort="Sung, Heungsup" uniqKey="Sung H" first="Heungsup" last="Sung">Heungsup Sung</name>
<affiliation>
<nlm:affiliation>Department of Laboratory Medicine, University of Ulsan College of Medicine and Asan Medical Center, Seoul, Republic of Korea.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lee, Seong Kyu" sort="Lee, Seong Kyu" uniqKey="Lee S" first="Seong Kyu" last="Lee">Seong Kyu Lee</name>
<affiliation>
<nlm:affiliation>Department of Laboratory Medicine, Bundang Jesaeng General Hospital, Seongnam, Republic of Korea.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Furmanchuk, Al Ona" sort="Furmanchuk, Al Ona" uniqKey="Furmanchuk A" first="Al'Ona" last="Furmanchuk">Al'Ona Furmanchuk</name>
<affiliation>
<nlm:affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lee, Hye Young" sort="Lee, Hye Young" uniqKey="Lee H" first="Hye-Young" last="Lee">Hye-Young Lee</name>
<affiliation>
<nlm:affiliation>Department of Laboratory Medicine, University of Ulsan College of Medicine and Asan Medical Center, Seoul, Republic of Korea; Department of Laboratory Medicine, U2Bio Laboratories, Seoul, Republic of Korea.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Scott, Gregory" sort="Scott, Gregory" uniqKey="Scott G" first="Gregory" last="Scott">Gregory Scott</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Gombar, Saurabh" sort="Gombar, Saurabh" uniqKey="Gombar S" first="Saurabh" last="Gombar">Saurabh Gombar</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Shah, Nigam" sort="Shah, Nigam" uniqKey="Shah N" first="Nigam" last="Shah">Nigam Shah</name>
<affiliation>
<nlm:affiliation>Department of Medicine, Division of Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Shen, Sam" sort="Shen, Sam" uniqKey="Shen S" first="Sam" last="Shen">Sam Shen</name>
<affiliation>
<nlm:affiliation>Department of Emergency Medicine, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Nassiri, Anna" sort="Nassiri, Anna" uniqKey="Nassiri A" first="Anna" last="Nassiri">Anna Nassiri</name>
<affiliation>
<nlm:affiliation>Northwestern Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Schneider, Daniel" sort="Schneider, Daniel" uniqKey="Schneider D" first="Daniel" last="Schneider">Daniel Schneider</name>
<affiliation>
<nlm:affiliation>Research Analytics at Northwestern University, Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Ahmad, Faraz S" sort="Ahmad, Faraz S" uniqKey="Ahmad F" first="Faraz S" last="Ahmad">Faraz S. Ahmad</name>
<affiliation>
<nlm:affiliation>Department of Medicine, Division of Cardiology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Liebovitz, David" sort="Liebovitz, David" uniqKey="Liebovitz D" first="David" last="Liebovitz">David Liebovitz</name>
<affiliation>
<nlm:affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Kho, Abel" sort="Kho, Abel" uniqKey="Kho A" first="Abel" last="Kho">Abel Kho</name>
<affiliation>
<nlm:affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Mooney, Sean" sort="Mooney, Sean" uniqKey="Mooney S" first="Sean" last="Mooney">Sean Mooney</name>
<affiliation>
<nlm:affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Pinsky, Benjamin A" sort="Pinsky, Benjamin A" uniqKey="Pinsky B" first="Benjamin A" last="Pinsky">Benjamin A. Pinsky</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, USA; Clinical Virology Laboratory, Stanford University Medical Center, Palo Alto, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Banaei, Niaz" sort="Banaei, Niaz" uniqKey="Banaei N" first="Niaz" last="Banaei">Niaz Banaei</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, USA; Clinical Microbiology Laboratory, Stanford University Medical Center, Palo Alto, CA, USA. Electronic address: nbanaei@stanford.edu.</nlm:affiliation>
</affiliation>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2020">2020</date>
<idno type="RBID">pubmed:32544861</idno>
<idno type="pmid">32544861</idno>
<idno type="doi">10.1016/j.jcv.2020.104502</idno>
<idno type="pmc">PMC7286235</idno>
<idno type="wicri:Area/Main/Corpus">000593</idno>
<idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000593</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.</title>
<author>
<name sortKey="Joshi, Rohan P" sort="Joshi, Rohan P" uniqKey="Joshi R" first="Rohan P" last="Joshi">Rohan P. Joshi</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Pejaver, Vikas" sort="Pejaver, Vikas" uniqKey="Pejaver V" first="Vikas" last="Pejaver">Vikas Pejaver</name>
<affiliation>
<nlm:affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Hammarlund, Noah E" sort="Hammarlund, Noah E" uniqKey="Hammarlund N" first="Noah E" last="Hammarlund">Noah E. Hammarlund</name>
<affiliation>
<nlm:affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Sung, Heungsup" sort="Sung, Heungsup" uniqKey="Sung H" first="Heungsup" last="Sung">Heungsup Sung</name>
<affiliation>
<nlm:affiliation>Department of Laboratory Medicine, University of Ulsan College of Medicine and Asan Medical Center, Seoul, Republic of Korea.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lee, Seong Kyu" sort="Lee, Seong Kyu" uniqKey="Lee S" first="Seong Kyu" last="Lee">Seong Kyu Lee</name>
<affiliation>
<nlm:affiliation>Department of Laboratory Medicine, Bundang Jesaeng General Hospital, Seongnam, Republic of Korea.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Furmanchuk, Al Ona" sort="Furmanchuk, Al Ona" uniqKey="Furmanchuk A" first="Al'Ona" last="Furmanchuk">Al'Ona Furmanchuk</name>
<affiliation>
<nlm:affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Lee, Hye Young" sort="Lee, Hye Young" uniqKey="Lee H" first="Hye-Young" last="Lee">Hye-Young Lee</name>
<affiliation>
<nlm:affiliation>Department of Laboratory Medicine, University of Ulsan College of Medicine and Asan Medical Center, Seoul, Republic of Korea; Department of Laboratory Medicine, U2Bio Laboratories, Seoul, Republic of Korea.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Scott, Gregory" sort="Scott, Gregory" uniqKey="Scott G" first="Gregory" last="Scott">Gregory Scott</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Gombar, Saurabh" sort="Gombar, Saurabh" uniqKey="Gombar S" first="Saurabh" last="Gombar">Saurabh Gombar</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Shah, Nigam" sort="Shah, Nigam" uniqKey="Shah N" first="Nigam" last="Shah">Nigam Shah</name>
<affiliation>
<nlm:affiliation>Department of Medicine, Division of Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Shen, Sam" sort="Shen, Sam" uniqKey="Shen S" first="Sam" last="Shen">Sam Shen</name>
<affiliation>
<nlm:affiliation>Department of Emergency Medicine, Stanford University School of Medicine, Stanford, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Nassiri, Anna" sort="Nassiri, Anna" uniqKey="Nassiri A" first="Anna" last="Nassiri">Anna Nassiri</name>
<affiliation>
<nlm:affiliation>Northwestern Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Schneider, Daniel" sort="Schneider, Daniel" uniqKey="Schneider D" first="Daniel" last="Schneider">Daniel Schneider</name>
<affiliation>
<nlm:affiliation>Research Analytics at Northwestern University, Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Ahmad, Faraz S" sort="Ahmad, Faraz S" uniqKey="Ahmad F" first="Faraz S" last="Ahmad">Faraz S. Ahmad</name>
<affiliation>
<nlm:affiliation>Department of Medicine, Division of Cardiology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Liebovitz, David" sort="Liebovitz, David" uniqKey="Liebovitz D" first="David" last="Liebovitz">David Liebovitz</name>
<affiliation>
<nlm:affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Kho, Abel" sort="Kho, Abel" uniqKey="Kho A" first="Abel" last="Kho">Abel Kho</name>
<affiliation>
<nlm:affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Mooney, Sean" sort="Mooney, Sean" uniqKey="Mooney S" first="Sean" last="Mooney">Sean Mooney</name>
<affiliation>
<nlm:affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Pinsky, Benjamin A" sort="Pinsky, Benjamin A" uniqKey="Pinsky B" first="Benjamin A" last="Pinsky">Benjamin A. Pinsky</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, USA; Clinical Virology Laboratory, Stanford University Medical Center, Palo Alto, CA, USA.</nlm:affiliation>
</affiliation>
</author>
<author>
<name sortKey="Banaei, Niaz" sort="Banaei, Niaz" uniqKey="Banaei N" first="Niaz" last="Banaei">Niaz Banaei</name>
<affiliation>
<nlm:affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, USA; Clinical Microbiology Laboratory, Stanford University Medical Center, Palo Alto, CA, USA. Electronic address: nbanaei@stanford.edu.</nlm:affiliation>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</title>
<idno type="eISSN">1873-5967</idno>
<imprint>
<date when="2020" type="published">2020</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass>
<keywords scheme="KwdEn" xml:lang="en">
<term>Adult (MeSH)</term>
<term>Aged (MeSH)</term>
<term>Aged, 80 and over (MeSH)</term>
<term>Blood Cell Count (methods)</term>
<term>COVID-19 (MeSH)</term>
<term>California (MeSH)</term>
<term>Case-Control Studies (MeSH)</term>
<term>Chicago (MeSH)</term>
<term>Clinical Decision Rules (MeSH)</term>
<term>Coronavirus Infections (diagnosis)</term>
<term>Diagnostic Tests, Routine (methods)</term>
<term>Emergency Medical Services (methods)</term>
<term>Female (MeSH)</term>
<term>Humans (MeSH)</term>
<term>Male (MeSH)</term>
<term>Middle Aged (MeSH)</term>
<term>Pandemics (MeSH)</term>
<term>Pneumonia, Viral (diagnosis)</term>
<term>Retrospective Studies (MeSH)</term>
<term>Sensitivity and Specificity (MeSH)</term>
<term>Washington (MeSH)</term>
<term>Young Adult (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en">
<term>California</term>
<term>Chicago</term>
<term>Washington</term>
</keywords>
<keywords scheme="MESH" qualifier="diagnosis" xml:lang="en">
<term>Coronavirus Infections</term>
<term>Pneumonia, Viral</term>
</keywords>
<keywords scheme="MESH" qualifier="methods" xml:lang="en">
<term>Blood Cell Count</term>
<term>Diagnostic Tests, Routine</term>
<term>Emergency Medical Services</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Adult</term>
<term>Aged</term>
<term>Aged, 80 and over</term>
<term>COVID-19</term>
<term>Case-Control Studies</term>
<term>Clinical Decision Rules</term>
<term>Female</term>
<term>Humans</term>
<term>Male</term>
<term>Middle Aged</term>
<term>Pandemics</term>
<term>Retrospective Studies</term>
<term>Sensitivity and Specificity</term>
<term>Young Adult</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">
<p>
<b>BACKGROUND</b>
</p>
<p>Testing for COVID-19 remains limited in the United States and across the world. Poor allocation of limited testing resources leads to misutilization of health system resources, which complementary rapid testing tools could ameliorate.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>OBJECTIVE</b>
</p>
<p>To predict SARS-CoV-2 PCR positivity based on complete blood count components and patient sex.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>STUDY DESIGN</b>
</p>
<p>A retrospective case-control design for collection of data and a logistic regression prediction model was used. Participants were emergency department patients > 18 years old who had concurrent complete blood counts and SARS-CoV-2 PCR testing. 33 confirmed SARS-CoV-2 PCR positive and 357 negative patients at Stanford Health Care were used for model training. Validation cohorts consisted of emergency department patients > 18 years old who had concurrent complete blood counts and SARS-CoV-2 PCR testing in Northern California (41 PCR positive, 495 PCR negative), Seattle, Washington (40 PCR positive, 306 PCR negative), Chicago, Illinois (245 PCR positive, 1015 PCR negative), and South Korea (9 PCR positive, 236 PCR negative).</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>RESULTS</b>
</p>
<p>A decision support tool that utilizes components of complete blood count and patient sex for prediction of SARS-CoV-2 PCR positivity demonstrated a C-statistic of 78 %, an optimized sensitivity of 93 %, and generalizability to other emergency department populations. By restricting PCR testing to predicted positive patients in a hypothetical scenario of 1000 patients requiring testing but testing resources limited to 60 % of patients, this tool would allow a 33 % increase in properly allocated resources.</p>
</div>
<div type="abstract" xml:lang="en">
<p>
<b>CONCLUSIONS</b>
</p>
<p>A prediction tool based on complete blood count results can better allocate SARS-CoV-2 testing and other health care resources such as personal protective equipment during a pandemic surge.</p>
</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<PMID Version="1">32544861</PMID>
<DateCompleted>
<Year>2020</Year>
<Month>08</Month>
<Day>11</Day>
</DateCompleted>
<DateRevised>
<Year>2021</Year>
<Month>01</Month>
<Day>10</Day>
</DateRevised>
<Article PubModel="Print-Electronic">
<Journal>
<ISSN IssnType="Electronic">1873-5967</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>129</Volume>
<PubDate>
<Year>2020</Year>
<Month>08</Month>
</PubDate>
</JournalIssue>
<Title>Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology</Title>
<ISOAbbreviation>J Clin Virol</ISOAbbreviation>
</Journal>
<ArticleTitle>A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.</ArticleTitle>
<Pagination>
<MedlinePgn>104502</MedlinePgn>
</Pagination>
<ELocationID EIdType="pii" ValidYN="Y">S1386-6532(20)30244-4</ELocationID>
<ELocationID EIdType="doi" ValidYN="Y">10.1016/j.jcv.2020.104502</ELocationID>
<Abstract>
<AbstractText Label="BACKGROUND">Testing for COVID-19 remains limited in the United States and across the world. Poor allocation of limited testing resources leads to misutilization of health system resources, which complementary rapid testing tools could ameliorate.</AbstractText>
<AbstractText Label="OBJECTIVE">To predict SARS-CoV-2 PCR positivity based on complete blood count components and patient sex.</AbstractText>
<AbstractText Label="STUDY DESIGN">A retrospective case-control design for collection of data and a logistic regression prediction model was used. Participants were emergency department patients > 18 years old who had concurrent complete blood counts and SARS-CoV-2 PCR testing. 33 confirmed SARS-CoV-2 PCR positive and 357 negative patients at Stanford Health Care were used for model training. Validation cohorts consisted of emergency department patients > 18 years old who had concurrent complete blood counts and SARS-CoV-2 PCR testing in Northern California (41 PCR positive, 495 PCR negative), Seattle, Washington (40 PCR positive, 306 PCR negative), Chicago, Illinois (245 PCR positive, 1015 PCR negative), and South Korea (9 PCR positive, 236 PCR negative).</AbstractText>
<AbstractText Label="RESULTS">A decision support tool that utilizes components of complete blood count and patient sex for prediction of SARS-CoV-2 PCR positivity demonstrated a C-statistic of 78 %, an optimized sensitivity of 93 %, and generalizability to other emergency department populations. By restricting PCR testing to predicted positive patients in a hypothetical scenario of 1000 patients requiring testing but testing resources limited to 60 % of patients, this tool would allow a 33 % increase in properly allocated resources.</AbstractText>
<AbstractText Label="CONCLUSIONS">A prediction tool based on complete blood count results can better allocate SARS-CoV-2 testing and other health care resources such as personal protective equipment during a pandemic surge.</AbstractText>
<CopyrightInformation>Copyright © 2020 Elsevier B.V. All rights reserved.</CopyrightInformation>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Joshi</LastName>
<ForeName>Rohan P</ForeName>
<Initials>RP</Initials>
<AffiliationInfo>
<Affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Pejaver</LastName>
<ForeName>Vikas</ForeName>
<Initials>V</Initials>
<AffiliationInfo>
<Affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Hammarlund</LastName>
<ForeName>Noah E</ForeName>
<Initials>NE</Initials>
<AffiliationInfo>
<Affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Sung</LastName>
<ForeName>Heungsup</ForeName>
<Initials>H</Initials>
<AffiliationInfo>
<Affiliation>Department of Laboratory Medicine, University of Ulsan College of Medicine and Asan Medical Center, Seoul, Republic of Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lee</LastName>
<ForeName>Seong Kyu</ForeName>
<Initials>SK</Initials>
<AffiliationInfo>
<Affiliation>Department of Laboratory Medicine, Bundang Jesaeng General Hospital, Seongnam, Republic of Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Furmanchuk</LastName>
<ForeName>Al'ona</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Lee</LastName>
<ForeName>Hye-Young</ForeName>
<Initials>HY</Initials>
<AffiliationInfo>
<Affiliation>Department of Laboratory Medicine, University of Ulsan College of Medicine and Asan Medical Center, Seoul, Republic of Korea; Department of Laboratory Medicine, U2Bio Laboratories, Seoul, Republic of Korea.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Scott</LastName>
<ForeName>Gregory</ForeName>
<Initials>G</Initials>
<AffiliationInfo>
<Affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Gombar</LastName>
<ForeName>Saurabh</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Shah</LastName>
<ForeName>Nigam</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>Department of Medicine, Division of Stanford University School of Medicine, Stanford, CA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Shen</LastName>
<ForeName>Sam</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Department of Emergency Medicine, Stanford University School of Medicine, Stanford, CA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Nassiri</LastName>
<ForeName>Anna</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Northwestern Medicine, Chicago, IL, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Schneider</LastName>
<ForeName>Daniel</ForeName>
<Initials>D</Initials>
<AffiliationInfo>
<Affiliation>Research Analytics at Northwestern University, Feinberg School of Medicine, Chicago, IL, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Ahmad</LastName>
<ForeName>Faraz S</ForeName>
<Initials>FS</Initials>
<AffiliationInfo>
<Affiliation>Department of Medicine, Division of Cardiology, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Liebovitz</LastName>
<ForeName>David</ForeName>
<Initials>D</Initials>
<AffiliationInfo>
<Affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Kho</LastName>
<ForeName>Abel</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Division of General Internal Medicine and Geriatrics, Northwestern University Feinberg School of Medicine, Chicago, IL, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Mooney</LastName>
<ForeName>Sean</ForeName>
<Initials>S</Initials>
<AffiliationInfo>
<Affiliation>Department of Biomedical Informatics and Medical Education, University of Washington School of Medicine, Seattle, WA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Pinsky</LastName>
<ForeName>Benjamin A</ForeName>
<Initials>BA</Initials>
<AffiliationInfo>
<Affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, USA; Clinical Virology Laboratory, Stanford University Medical Center, Palo Alto, CA, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Banaei</LastName>
<ForeName>Niaz</ForeName>
<Initials>N</Initials>
<AffiliationInfo>
<Affiliation>Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA; Department of Medicine, Division of Infectious Diseases and Geographic Medicine, Stanford University School of Medicine, Stanford, CA, USA; Clinical Microbiology Laboratory, Stanford University Medical Center, Palo Alto, CA, USA. Electronic address: nbanaei@stanford.edu.</Affiliation>
</AffiliationInfo>
</Author>
</AuthorList>
<Language>eng</Language>
<GrantList CompleteYN="Y">
<Grant>
<GrantID>K12 HS026385</GrantID>
<Acronym>HS</Acronym>
<Agency>AHRQ HHS</Agency>
<Country>United States</Country>
</Grant>
</GrantList>
<PublicationTypeList>
<PublicationType UI="D023362">Evaluation Study</PublicationType>
<PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2020</Year>
<Month>06</Month>
<Day>10</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>Netherlands</Country>
<MedlineTA>J Clin Virol</MedlineTA>
<NlmUniqueID>9815671</NlmUniqueID>
<ISSNLinking>1386-6532</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<MeshHeadingList>
<MeshHeading>
<DescriptorName UI="D000328" MajorTopicYN="N">Adult</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000368" MajorTopicYN="N">Aged</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000369" MajorTopicYN="N">Aged, 80 and over</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D001772" MajorTopicYN="N">Blood Cell Count</DescriptorName>
<QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000086382" MajorTopicYN="N">COVID-19</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002140" MajorTopicYN="N" Type="Geographic">California</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D016022" MajorTopicYN="N">Case-Control Studies</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D002641" MajorTopicYN="N" Type="Geographic">Chicago</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D000081415" MajorTopicYN="Y">Clinical Decision Rules</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D018352" MajorTopicYN="N">Coronavirus Infections</DescriptorName>
<QualifierName UI="Q000175" MajorTopicYN="Y">diagnosis</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D003955" MajorTopicYN="N">Diagnostic Tests, Routine</DescriptorName>
<QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D004632" MajorTopicYN="N">Emergency Medical Services</DescriptorName>
<QualifierName UI="Q000379" MajorTopicYN="Y">methods</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D006801" MajorTopicYN="N">Humans</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D008875" MajorTopicYN="N">Middle Aged</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D058873" MajorTopicYN="N">Pandemics</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D011024" MajorTopicYN="N">Pneumonia, Viral</DescriptorName>
<QualifierName UI="Q000175" MajorTopicYN="Y">diagnosis</QualifierName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012189" MajorTopicYN="N">Retrospective Studies</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D012680" MajorTopicYN="N">Sensitivity and Specificity</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D014861" MajorTopicYN="N" Type="Geographic">Washington</DescriptorName>
</MeshHeading>
<MeshHeading>
<DescriptorName UI="D055815" MajorTopicYN="N">Young Adult</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="Y">COVID-19</Keyword>
<Keyword MajorTopicYN="Y">Machine learning</Keyword>
<Keyword MajorTopicYN="Y">Prediction tool</Keyword>
<Keyword MajorTopicYN="Y">Rapid testing</Keyword>
<Keyword MajorTopicYN="Y">SARS-CoV-2</Keyword>
</KeywordList>
<CoiStatement>Declaration of Competing Interest The authors declare no competing interests.</CoiStatement>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2020</Year>
<Month>06</Month>
<Day>03</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2020</Year>
<Month>06</Month>
<Day>07</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2020</Year>
<Month>6</Month>
<Day>17</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2020</Year>
<Month>8</Month>
<Day>12</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2020</Year>
<Month>6</Month>
<Day>17</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">32544861</ArticleId>
<ArticleId IdType="pii">S1386-6532(20)30244-4</ArticleId>
<ArticleId IdType="doi">10.1016/j.jcv.2020.104502</ArticleId>
<ArticleId IdType="pmc">PMC7286235</ArticleId>
</ArticleIdList>
<ReferenceList>
<Reference>
<Citation>N Engl J Med. 2020 May 21;382(21):2049-2055</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32202722</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>JAMA. 2020 May 19;323(19):1967-1969</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32250394</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Acad Emerg Med. 2003 Oct;10(10):1070-80</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">14525740</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>JAMA. 2020 May 26;323(20):2085-2086</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32293646</ArticleId>
</ArticleIdList>
</Reference>
<Reference>
<Citation>Lancet. 2020 Feb 15;395(10223):507-513</Citation>
<ArticleIdList>
<ArticleId IdType="pubmed">32007143</ArticleId>
</ArticleIdList>
</Reference>
</ReferenceList>
</PubmedData>
</pubmed>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Sante/explor/CovidStanfordV1/Data/Main/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000593 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd -nk 000593 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Sante
   |area=    CovidStanfordV1
   |flux=    Main
   |étape=   Corpus
   |type=    RBID
   |clé=     pubmed:32544861
   |texte=   A predictive tool for identification of SARS-CoV-2 PCR-negative emergency department patients using routine test results.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Corpus/RBID.i   -Sk "pubmed:32544861" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/Main/Corpus/biblio.hfd   \
       | NlmPubMed2Wicri -a CovidStanfordV1 

Wicri

This area was generated with Dilib version V0.6.38.
Data generation: Tue Feb 2 21:24:25 2021. Site generation: Tue Feb 2 21:26:08 2021