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IBWS: IST Bioinformatics Web Services.

Identifieur interne : 000361 ( PubMed/Curation ); précédent : 000360; suivant : 000362

IBWS: IST Bioinformatics Web Services.

Auteurs : Achille Zappa [Italie] ; Mariangela Miele ; Paolo Romano

Source :

Nucleic acids research ; 2010.

RBID : pubmed:20484374

English descriptors

KwdEn :
- Biological Specimen Banks, Catalogs as Topic, Computational Biology, Databases, Factual, Databases, Nucleic Acid, Genes, p53, Internet, Mutation, Software, User-Computer Interface.
MESH :
- Biological Specimen Banks, Catalogs as Topic, Computational Biology, Databases, Factual, Databases, Nucleic Acid, Genes, p53, Internet, Mutation, Software, User-Computer Interface.

Abstract

The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than 130,000 biological resources, like strains of micro-organisms and human and animal cell lines, included in 29 collections from some of the most known European Biological Resource Centers. An Sequence Retrieval System (SRS) implementation of the TP53 Mutation Database of the International Agency for Research on Cancer (Lyon) was made available in order to improve interoperability of this data with other molecular biology databases. 'SRS by WS (SWS)', a system for retrieving information on public SRS sites and for directly querying them, was also implemented. In order to make this information available through application programming interfaces, we implemented a suite of free web services (WS), called the 'IST Bioinformatics Web Services (IBWS)'. A support web site, including a description of the system, a list of available WS together with help pages, links to corresponding WSDLs and forms for testing services, is available at http://bioinformatics.istge.it/ibws/. WSDL definitions can also be retrieved directly at http://bioinformatics.istge.it:8080/axis/services.

DOI: 10.1093/nar/gkq416
PubMed: 20484374

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Le document en format XML

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<author><name sortKey="Zappa, Achille" sort="Zappa, Achille" uniqKey="Zappa A" first="Achille" last="Zappa">Achille Zappa</name>
<affiliation wicri:level="1"><nlm:affiliation>Department of Informatics, Systems and Telematics, University of Genoa, Via Opera Pia 13, I-16145, Genoa, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Informatics, Systems and Telematics, University of Genoa, Via Opera Pia 13, I-16145, Genoa</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Miele, Mariangela" sort="Miele, Mariangela" uniqKey="Miele M" first="Mariangela" last="Miele">Mariangela Miele</name>
</author>
<author><name sortKey="Romano, Paolo" sort="Romano, Paolo" uniqKey="Romano P" first="Paolo" last="Romano">Paolo Romano</name>
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<affiliation wicri:level="1"><nlm:affiliation>Department of Informatics, Systems and Telematics, University of Genoa, Via Opera Pia 13, I-16145, Genoa, Italy.</nlm:affiliation>
<country xml:lang="fr">Italie</country>
<wicri:regionArea>Department of Informatics, Systems and Telematics, University of Genoa, Via Opera Pia 13, I-16145, Genoa</wicri:regionArea>
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<author><name sortKey="Miele, Mariangela" sort="Miele, Mariangela" uniqKey="Miele M" first="Mariangela" last="Miele">Mariangela Miele</name>
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<author><name sortKey="Romano, Paolo" sort="Romano, Paolo" uniqKey="Romano P" first="Paolo" last="Romano">Paolo Romano</name>
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<series><title level="j">Nucleic acids research</title>
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<term>Databases, Nucleic Acid</term>
<term>Genes, p53</term>
<term>Internet</term>
<term>Mutation</term>
<term>Software</term>
<term>User-Computer Interface</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Biological Specimen Banks</term>
<term>Catalogs as Topic</term>
<term>Computational Biology</term>
<term>Databases, Factual</term>
<term>Databases, Nucleic Acid</term>
<term>Genes, p53</term>
<term>Internet</term>
<term>Mutation</term>
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<front><div type="abstract" xml:lang="en">The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than 130,000 biological resources, like strains of micro-organisms and human and animal cell lines, included in 29 collections from some of the most known European Biological Resource Centers. An Sequence Retrieval System (SRS) implementation of the TP53 Mutation Database of the International Agency for Research on Cancer (Lyon) was made available in order to improve interoperability of this data with other molecular biology databases. 'SRS by WS (SWS)', a system for retrieving information on public SRS sites and for directly querying them, was also implemented. In order to make this information available through application programming interfaces, we implemented a suite of free web services (WS), called the 'IST Bioinformatics Web Services (IBWS)'. A support web site, including a description of the system, a list of available WS together with help pages, links to corresponding WSDLs and forms for testing services, is available at http://bioinformatics.istge.it/ibws/. WSDL definitions can also be retrieved directly at http://bioinformatics.istge.it:8080/axis/services.</div>
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<Title>Nucleic acids research</Title>
<ISOAbbreviation>Nucleic Acids Res.</ISOAbbreviation>
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<ArticleTitle>IBWS: IST Bioinformatics Web Services.</ArticleTitle>
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<Abstract><AbstractText>The Bioinformatics group at the National Cancer Research Institute (IST) of Genoa has been involved since many years in the development and maintenance of biomedical information systems. Among them, the Common Access to Biological Resources and Information network services offer access to more than 130,000 biological resources, like strains of micro-organisms and human and animal cell lines, included in 29 collections from some of the most known European Biological Resource Centers. An Sequence Retrieval System (SRS) implementation of the TP53 Mutation Database of the International Agency for Research on Cancer (Lyon) was made available in order to improve interoperability of this data with other molecular biology databases. 'SRS by WS (SWS)', a system for retrieving information on public SRS sites and for directly querying them, was also implemented. In order to make this information available through application programming interfaces, we implemented a suite of free web services (WS), called the 'IST Bioinformatics Web Services (IBWS)'. A support web site, including a description of the system, a list of available WS together with help pages, links to corresponding WSDLs and forms for testing services, is available at http://bioinformatics.istge.it/ibws/. WSDL definitions can also be retrieved directly at http://bioinformatics.istge.it:8080/axis/services.</AbstractText>
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<Author ValidYN="Y"><LastName>Romano</LastName>
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<CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Appl Bioinformatics. 2005;4(3):175-86</RefSource>
<PMID Version="1">16231959</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W729-32</RefSource>
<PMID Version="1">16845108</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 2009 Jan;37(Database issue):D925-32</RefSource>
<PMID Version="1">18927105</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Brief Bioinform. 2008 Jan;9(1):57-68</RefSource>
<PMID Version="1">18056132</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>BMC Bioinformatics. 2008;9 Suppl 2:S15</RefSource>
<PMID Version="1">18387203</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Hum Mutat. 2007 Jun;28(6):622-9</RefSource>
<PMID Version="1">17311302</PMID>
</CommentsCorrections>
</CommentsCorrectionsList>
<MeshHeadingList><MeshHeading><DescriptorName MajorTopicYN="Y" UI="D018070">Biological Specimen Banks</DescriptorName>
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<MeshHeading><DescriptorName MajorTopicYN="N" UI="D014584">User-Computer Interface</DescriptorName>
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IBWS: IST Bioinformatics Web Services.

IBWS: IST Bioinformatics Web Services.

Source :

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

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