Serveur d'exploration sur l'opéra

Attention, ce site est en cours de développement !
Attention, site généré par des moyens informatiques à partir de corpus bruts.
Les informations ne sont donc pas validées.

Easy Bioinformatics Analysis (EBiAn): a package for manipulating and analysis of short biological sequences.

Identifieur interne : 000328 ( PubMed/Curation ); précédent : 000327; suivant : 000329

Easy Bioinformatics Analysis (EBiAn): a package for manipulating and analysis of short biological sequences.

Auteurs : Luiz Carlos Bertucci Barbosa [Brésil] ; Saulo Santesso Garrido ; Anderson Garcia ; Davi Barbosa Delfino ; Rodrigo Duarte Gonçalves ; Reinaldo Marchetto

Source :

RBID : pubmed:21346860

Abstract

The work of biochemists and molecular biologists often is dependent or extremely favored by a preliminary computer analysis. Thus, the development of an efficient and friendly computational tool is very important. In this work, we developed a package of programs in Javascript language which can be used online or locally. The programs depend exclusively of Web browsers and are compatible with Internet Explorer, Opera, Mozilla Firefox and Google Chrome. With the EBiAn package it is can perform the main analysis and manipulation of DNA, RNA, proteins and peptides sequences. The programs can be freely accessed and adapted or modified to generate new programs.

PubMed: 21346860

Links toward previous steps (curation, corpus...)


Links to Exploration step

pubmed:21346860

Le document en format XML

<record>
<TEI>
<teiHeader>
<fileDesc>
<titleStmt>
<title xml:lang="en">Easy Bioinformatics Analysis (EBiAn): a package for manipulating and analysis of short biological sequences.</title>
<author>
<name sortKey="Bertucci Barbosa, Luiz Carlos" sort="Bertucci Barbosa, Luiz Carlos" uniqKey="Bertucci Barbosa L" first="Luiz Carlos" last="Bertucci Barbosa">Luiz Carlos Bertucci Barbosa</name>
<affiliation wicri:level="1">
<nlm:affiliation>Institute of Chemistry, UNESP - Univ Estadual Paulista, Department of Biochemistry and Technological Chemistry, Araraquara, São Paulo, Brazil.</nlm:affiliation>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Institute of Chemistry, UNESP - Univ Estadual Paulista, Department of Biochemistry and Technological Chemistry, Araraquara, São Paulo</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Garrido, Saulo Santesso" sort="Garrido, Saulo Santesso" uniqKey="Garrido S" first="Saulo Santesso" last="Garrido">Saulo Santesso Garrido</name>
</author>
<author>
<name sortKey="Garcia, Anderson" sort="Garcia, Anderson" uniqKey="Garcia A" first="Anderson" last="Garcia">Anderson Garcia</name>
</author>
<author>
<name sortKey="Delfino, Davi Barbosa" sort="Delfino, Davi Barbosa" uniqKey="Delfino D" first="Davi Barbosa" last="Delfino">Davi Barbosa Delfino</name>
</author>
<author>
<name sortKey="Goncalves, Rodrigo Duarte" sort="Goncalves, Rodrigo Duarte" uniqKey="Goncalves R" first="Rodrigo Duarte" last="Gonçalves">Rodrigo Duarte Gonçalves</name>
</author>
<author>
<name sortKey="Marchetto, Reinaldo" sort="Marchetto, Reinaldo" uniqKey="Marchetto R" first="Reinaldo" last="Marchetto">Reinaldo Marchetto</name>
</author>
</titleStmt>
<publicationStmt>
<idno type="wicri:source">PubMed</idno>
<date when="2010">2010</date>
<idno type="RBID">pubmed:21346860</idno>
<idno type="pmid">21346860</idno>
<idno type="wicri:Area/PubMed/Corpus">000328</idno>
<idno type="wicri:Area/PubMed/Curation">000328</idno>
</publicationStmt>
<sourceDesc>
<biblStruct>
<analytic>
<title xml:lang="en">Easy Bioinformatics Analysis (EBiAn): a package for manipulating and analysis of short biological sequences.</title>
<author>
<name sortKey="Bertucci Barbosa, Luiz Carlos" sort="Bertucci Barbosa, Luiz Carlos" uniqKey="Bertucci Barbosa L" first="Luiz Carlos" last="Bertucci Barbosa">Luiz Carlos Bertucci Barbosa</name>
<affiliation wicri:level="1">
<nlm:affiliation>Institute of Chemistry, UNESP - Univ Estadual Paulista, Department of Biochemistry and Technological Chemistry, Araraquara, São Paulo, Brazil.</nlm:affiliation>
<country xml:lang="fr">Brésil</country>
<wicri:regionArea>Institute of Chemistry, UNESP - Univ Estadual Paulista, Department of Biochemistry and Technological Chemistry, Araraquara, São Paulo</wicri:regionArea>
</affiliation>
</author>
<author>
<name sortKey="Garrido, Saulo Santesso" sort="Garrido, Saulo Santesso" uniqKey="Garrido S" first="Saulo Santesso" last="Garrido">Saulo Santesso Garrido</name>
</author>
<author>
<name sortKey="Garcia, Anderson" sort="Garcia, Anderson" uniqKey="Garcia A" first="Anderson" last="Garcia">Anderson Garcia</name>
</author>
<author>
<name sortKey="Delfino, Davi Barbosa" sort="Delfino, Davi Barbosa" uniqKey="Delfino D" first="Davi Barbosa" last="Delfino">Davi Barbosa Delfino</name>
</author>
<author>
<name sortKey="Goncalves, Rodrigo Duarte" sort="Goncalves, Rodrigo Duarte" uniqKey="Goncalves R" first="Rodrigo Duarte" last="Gonçalves">Rodrigo Duarte Gonçalves</name>
</author>
<author>
<name sortKey="Marchetto, Reinaldo" sort="Marchetto, Reinaldo" uniqKey="Marchetto R" first="Reinaldo" last="Marchetto">Reinaldo Marchetto</name>
</author>
</analytic>
<series>
<title level="j">Bioinformation</title>
<idno type="e-ISSN">0973-2063</idno>
<imprint>
<date when="2010" type="published">2010</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc>
<textClass></textClass>
</profileDesc>
</teiHeader>
<front>
<div type="abstract" xml:lang="en">The work of biochemists and molecular biologists often is dependent or extremely favored by a preliminary computer analysis. Thus, the development of an efficient and friendly computational tool is very important. In this work, we developed a package of programs in Javascript language which can be used online or locally. The programs depend exclusively of Web browsers and are compatible with Internet Explorer, Opera, Mozilla Firefox and Google Chrome. With the EBiAn package it is can perform the main analysis and manipulation of DNA, RNA, proteins and peptides sequences. The programs can be freely accessed and adapted or modified to generate new programs.</div>
</front>
</TEI>
<pubmed>
<MedlineCitation Owner="NLM" Status="PubMed-not-MEDLINE">
<PMID Version="1">21346860</PMID>
<DateCreated>
<Year>2011</Year>
<Month>02</Month>
<Day>24</Day>
</DateCreated>
<DateCompleted>
<Year>2011</Year>
<Month>07</Month>
<Day>14</Day>
</DateCompleted>
<DateRevised>
<Year>2013</Year>
<Month>05</Month>
<Day>29</Day>
</DateRevised>
<Article PubModel="Electronic">
<Journal>
<ISSN IssnType="Electronic">0973-2063</ISSN>
<JournalIssue CitedMedium="Internet">
<Volume>5</Volume>
<Issue>2</Issue>
<PubDate>
<Year>2010</Year>
</PubDate>
</JournalIssue>
<Title>Bioinformation</Title>
<ISOAbbreviation>Bioinformation</ISOAbbreviation>
</Journal>
<ArticleTitle>Easy Bioinformatics Analysis (EBiAn): a package for manipulating and analysis of short biological sequences.</ArticleTitle>
<Pagination>
<MedlinePgn>46-8</MedlinePgn>
</Pagination>
<Abstract>
<AbstractText Label="UNLABELLED">The work of biochemists and molecular biologists often is dependent or extremely favored by a preliminary computer analysis. Thus, the development of an efficient and friendly computational tool is very important. In this work, we developed a package of programs in Javascript language which can be used online or locally. The programs depend exclusively of Web browsers and are compatible with Internet Explorer, Opera, Mozilla Firefox and Google Chrome. With the EBiAn package it is can perform the main analysis and manipulation of DNA, RNA, proteins and peptides sequences. The programs can be freely accessed and adapted or modified to generate new programs.</AbstractText>
<AbstractText Label="AVAILABILITY" NlmCategory="BACKGROUND">http://www.iq.unesp.br/EXTENSAO/EBiAn/html/ebian.html.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y">
<Author ValidYN="Y">
<LastName>Bertucci Barbosa</LastName>
<ForeName>Luiz Carlos</ForeName>
<Initials>LC</Initials>
<AffiliationInfo>
<Affiliation>Institute of Chemistry, UNESP - Univ Estadual Paulista, Department of Biochemistry and Technological Chemistry, Araraquara, São Paulo, Brazil.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Garrido</LastName>
<ForeName>Saulo Santesso</ForeName>
<Initials>SS</Initials>
</Author>
<Author ValidYN="Y">
<LastName>Garcia</LastName>
<ForeName>Anderson</ForeName>
<Initials>A</Initials>
</Author>
<Author ValidYN="Y">
<LastName>Delfino</LastName>
<ForeName>Davi Barbosa</ForeName>
<Initials>DB</Initials>
</Author>
<Author ValidYN="Y">
<LastName>Gonçalves</LastName>
<ForeName>Rodrigo Duarte</ForeName>
<Initials>RD</Initials>
</Author>
<Author ValidYN="Y">
<LastName>Marchetto</LastName>
<ForeName>Reinaldo</ForeName>
<Initials>R</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList>
<PublicationType UI="D016428">Journal Article</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic">
<Year>2010</Year>
<Month>07</Month>
<Day>06</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo>
<Country>Singapore</Country>
<MedlineTA>Bioinformation</MedlineTA>
<NlmUniqueID>101258255</NlmUniqueID>
<ISSNLinking>0973-2063</ISSNLinking>
</MedlineJournalInfo>
<CommentsCorrectionsList>
<CommentsCorrections RefType="Cites">
<RefSource>Protein Seq Data Anal. 1987;1(1):13-20</RefSource>
<PMID Version="1">3447153</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites">
<RefSource>Biochem Biophys Res Commun. 1967 Apr 20;27(2):157-62</RefSource>
<PMID Version="1">6035483</PMID>
</CommentsCorrections>
</CommentsCorrectionsList>
<OtherID Source="NLM">PMC3039986</OtherID>
<KeywordList Owner="NOTNLM">
<Keyword MajorTopicYN="N">bioinformatics</Keyword>
<Keyword MajorTopicYN="N">sequence manipulating</Keyword>
</KeywordList>
</MedlineCitation>
<PubmedData>
<History>
<PubMedPubDate PubStatus="received">
<Year>2010</Year>
<Month>5</Month>
<Day>14</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted">
<Year>2010</Year>
<Month>6</Month>
<Day>08</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="epublish">
<Year>2010</Year>
<Month>7</Month>
<Day>06</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez">
<Year>2011</Year>
<Month>2</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed">
<Year>2011</Year>
<Month>2</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline">
<Year>2011</Year>
<Month>2</Month>
<Day>25</Day>
<Hour>6</Hour>
<Minute>1</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>epublish</PublicationStatus>
<ArticleIdList>
<ArticleId IdType="pubmed">21346860</ArticleId>
<ArticleId IdType="pmc">PMC3039986</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Wicri/Musique/explor/OperaV1/Data/PubMed/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000328 | SxmlIndent | more

Ou

HfdSelect -h $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd -nk 000328 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Wicri/Musique
   |area=    OperaV1
   |flux=    PubMed
   |étape=   Curation
   |type=    RBID
   |clé=     pubmed:21346860
   |texte=   Easy Bioinformatics Analysis (EBiAn): a package for manipulating and analysis of short biological sequences.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Curation/RBID.i   -Sk "pubmed:21346860" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a OperaV1 

Wicri

This area was generated with Dilib version V0.6.21.
Data generation: Thu Apr 14 14:59:05 2016. Site generation: Thu Jan 4 23:09:23 2024