SNUFER: A software for localization and presentation of single nucleotide polymorphisms using a Clustal multiple sequence alignment output file
Identifieur interne : 001005 ( Main/Merge ); précédent : 001004; suivant : 001006SNUFER: A software for localization and presentation of single nucleotide polymorphisms using a Clustal multiple sequence alignment output file
Auteurs : Marco A B. Mansur [Brésil] ; Giovana P. Cardozo [Brésil] ; Elaine V. Santos [Brésil] ; Mozart Marins [Brésil]Source :
- Bioinformation ; 2008.
Abstract
SNUFER is a software for the automatic localization and generation of tables used for the presentation of single nucleotide
polymorphisms (SNPs). After input of a fasta file containing the sequences to be analyzed, a multiple sequence alignment is
generated using ClustalW ran inside SNUFER. The ClustalW output file is then used to generate a table which displays the
SNPs detected in the aligned sequences and their degree of similarity. This table can be exported to Microsoft Word,
Microsoft Excel or as a single text file, permitting further editing for publication. The software was written using Delphi
7 for programming and FireBird 2.0 for sequence database management. It is freely available for noncommercial use and can be
downloaded from
Url:
PubMed: 19238196
PubMed Central: 2639674
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PMC:2639674Le document en format XML
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Mansur</name><affiliation wicri:level="2"><nlm:aff id="A1">Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP, Brazil</nlm:aff><country xml:lang="fr">Brésil</country><wicri:regionArea>Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP</wicri:regionArea><placeName><region type="state">État de São Paulo</region></placeName></affiliation></author><author><name sortKey="Cardozo, Giovana P" sort="Cardozo, Giovana P" uniqKey="Cardozo G" first="Giovana P" last="Cardozo">Giovana P. Cardozo</name><affiliation wicri:level="2"><nlm:aff id="A1">Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP, Brazil</nlm:aff><country xml:lang="fr">Brésil</country><wicri:regionArea>Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP</wicri:regionArea><placeName><region type="state">État de São Paulo</region></placeName></affiliation></author><author><name sortKey="Santos, Elaine V" sort="Santos, Elaine V" uniqKey="Santos E" first="Elaine V" last="Santos">Elaine V. Santos</name><affiliation wicri:level="2"><nlm:aff id="A1">Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP, Brazil</nlm:aff><country xml:lang="fr">Brésil</country><wicri:regionArea>Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP</wicri:regionArea><placeName><region type="state">État de São Paulo</region></placeName></affiliation></author><author><name sortKey="Marins, Mozart" sort="Marins, Mozart" uniqKey="Marins M" first="Mozart" last="Marins">Mozart Marins</name><affiliation wicri:level="2"><nlm:aff id="A1">Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP, Brazil</nlm:aff><country xml:lang="fr">Brésil</country><wicri:regionArea>Unidade de Biotecnologia, UNAERP, Ribeirão Preto, SP</wicri:regionArea><placeName><region type="state">État de São Paulo</region></placeName></affiliation><affiliation wicri:level="2"><nlm:aff id="A2">Heranza - Biotecnogia, Ribeirão Preto, SP, Brazil</nlm:aff><country xml:lang="fr">Brésil</country><wicri:regionArea>Heranza - Biotecnogia, Ribeirão Preto, SP</wicri:regionArea><placeName><region type="state">État de São Paulo</region></placeName></affiliation></author></analytic><series><title level="j">Bioinformation</title><idno type="e-ISSN">0973-2063</idno><imprint><date when="2008">2008</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>
SNUFER is a software for the automatic localization and generation of tables used for the presentation of single nucleotide
polymorphisms (SNPs). After input of a fasta file containing the sequences to be analyzed, a multiple sequence alignment is
generated using ClustalW ran inside SNUFER. The ClustalW output file is then used to generate a table which displays the
SNPs detected in the aligned sequences and their degree of similarity. This table can be exported to Microsoft Word,
Microsoft Excel or as a single text file, permitting further editing for publication. The software was written using Delphi
7 for programming and FireBird 2.0 for sequence database management. It is freely available for noncommercial use and can be
downloaded from <ext-link ext-link-type="uri" xlink:href="http://www.heranza.com.br/bioinformatica2.htm">http://www.heranza.com.br/bioinformatica2.htm</ext-link>.
</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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