Historical, spatial, temporal, and time-space epidemiology of very virulent infectious bursal disease in California: a retrospective study 2008-2011.
Identifieur interne : 000172 ( PubMed/Checkpoint ); précédent : 000171; suivant : 000173Historical, spatial, temporal, and time-space epidemiology of very virulent infectious bursal disease in California: a retrospective study 2008-2011.
Auteurs : Maurice Pitesky [États-Unis] ; Kristina Cataline ; Beate Crossley ; Michael Poulos ; Greg Ramos ; Dave Willoughby ; Peter Woolcock ; Gregg Cutler ; Mark Bland ; Johnny Tran ; Daral Jackwood ; Larry Allen ; Rich Breitmeyer ; Annette Jones ; Kenneth Forsythe ; C Gabriel Sentíes-Cué ; Bruce CharltonSource :
- Avian diseases [ 0005-2086 ] ; 2013.
English descriptors
- KwdEn :
- Animals, Birnaviridae Infections (epidemiology), Birnaviridae Infections (veterinary), Birnaviridae Infections (virology), California (epidemiology), Chickens, Disease Outbreaks (veterinary), Infectious bursal disease virus (classification), Infectious bursal disease virus (genetics), Infectious bursal disease virus (isolation & purification), Infectious bursal disease virus (pathogenicity), Poultry Diseases (epidemiology), Poultry Diseases (virology), Retrospective Studies, Reverse Transcriptase Polymerase Chain Reaction (veterinary), Sequence Analysis, DNA (veterinary).
- MESH :
- geographic , epidemiology : California.
- classification : Infectious bursal disease virus.
- epidemiology : Birnaviridae Infections, Poultry Diseases.
- genetics : Infectious bursal disease virus.
- isolation & purification : Infectious bursal disease virus.
- pathogenicity : Infectious bursal disease virus.
- veterinary : Birnaviridae Infections, Disease Outbreaks, Reverse Transcriptase Polymerase Chain Reaction, Sequence Analysis, DNA.
- virology : Birnaviridae Infections, Poultry Diseases.
- Animals, Chickens, Retrospective Studies.
Abstract
In December of 2008 very virulent infectious bursal disease virus (vvIBDV) was identified in a commercial flock in northern California. Since then several other backyard and commercial facilities in California have had flocks affected by the same strain and other unique (previously unseen) strains of IBDV. Previous to this incident, very virulent infectious bursal disease (vvIBD) had never been identified in North America. Following the initial outbreak in 2008, California became the first state to undertake a voluntary surveillance effort to try to determine the geographical prevalence of vvIBD based on sequencing of a portion of the segment A region of the vvIBDV genome. To date we have complete geographical information on approximately 500 separate accessions representing approximately 1500 birds from over 200 commercial (-85% of the facilities) and backyard facilities (-15% of the facilities) throughout the state. Sequencing of targeted regions of both the segment A and segment B regions of the genome has revealed three distinct types of IBDV in California chickens. One type is genetically and in pathogenically consistent with vvIBDV. The second and third types only have a segment A region consistent with vvIBDV. Geographic information system mapping coupled with spatial-temporal cluster analysis identified significant spatial and time-space clustering; however, no temporal clustering was noted. The lack of temporal clustering coupled with negative vvIBDV results in tested avian wildlife implies that avian wildlife in California do not currently appear to play a significant role in vvIBDV transmission. In the voluntary surveillance that was done in the Central Valley of California, which has a high density of commercial poultry, no positive farms were found when 142 of 504 farms were sampled. Given this level of sampling, the confidence (probability) of detecting an affected commercial flock was calculated to be between 28% and 81% depending on whether one or five hypothetically affected farms were affected.
DOI: 10.1637/10302-071112-Reg.1
PubMed: 23678733
Affiliations:
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Maurice.pitesky@cdfa.ca.gov</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>California Department of Food and Agriculture, Animal Health Branch, 2800 Gateway Oaks, Sacramento, CA 95833</wicri:regionArea><placeName><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Cataline, Kristina" sort="Cataline, Kristina" uniqKey="Cataline K" first="Kristina" last="Cataline">Kristina Cataline</name></author><author><name sortKey="Crossley, Beate" sort="Crossley, Beate" uniqKey="Crossley B" first="Beate" last="Crossley">Beate Crossley</name></author><author><name sortKey="Poulos, Michael" sort="Poulos, Michael" uniqKey="Poulos M" first="Michael" last="Poulos">Michael Poulos</name></author><author><name sortKey="Ramos, Greg" sort="Ramos, Greg" uniqKey="Ramos G" first="Greg" last="Ramos">Greg Ramos</name></author><author><name sortKey="Willoughby, Dave" sort="Willoughby, Dave" uniqKey="Willoughby D" first="Dave" last="Willoughby">Dave Willoughby</name></author><author><name sortKey="Woolcock, Peter" sort="Woolcock, Peter" uniqKey="Woolcock P" first="Peter" last="Woolcock">Peter Woolcock</name></author><author><name sortKey="Cutler, Gregg" sort="Cutler, Gregg" uniqKey="Cutler G" first="Gregg" last="Cutler">Gregg Cutler</name></author><author><name sortKey="Bland, Mark" sort="Bland, Mark" uniqKey="Bland M" first="Mark" last="Bland">Mark Bland</name></author><author><name sortKey="Tran, Johnny" sort="Tran, Johnny" uniqKey="Tran J" first="Johnny" last="Tran">Johnny Tran</name></author><author><name sortKey="Jackwood, Daral" sort="Jackwood, Daral" uniqKey="Jackwood D" first="Daral" last="Jackwood">Daral Jackwood</name></author><author><name sortKey="Allen, Larry" sort="Allen, Larry" uniqKey="Allen L" first="Larry" last="Allen">Larry Allen</name></author><author><name sortKey="Breitmeyer, Rich" sort="Breitmeyer, Rich" uniqKey="Breitmeyer R" first="Rich" last="Breitmeyer">Rich Breitmeyer</name></author><author><name sortKey="Jones, Annette" sort="Jones, Annette" uniqKey="Jones A" first="Annette" last="Jones">Annette Jones</name></author><author><name sortKey="Forsythe, Kenneth" sort="Forsythe, Kenneth" uniqKey="Forsythe K" first="Kenneth" last="Forsythe">Kenneth Forsythe</name></author><author><name sortKey="Senties Cue, C Gabriel" sort="Senties Cue, C Gabriel" uniqKey="Senties Cue C" first="C Gabriel" last="Sentíes-Cué">C Gabriel Sentíes-Cué</name></author><author><name sortKey="Charlton, Bruce" sort="Charlton, Bruce" uniqKey="Charlton B" first="Bruce" last="Charlton">Bruce Charlton</name></author></analytic><series><title level="j">Avian diseases</title><idno type="ISSN">0005-2086</idno><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Birnaviridae Infections (epidemiology)</term><term>Birnaviridae Infections (veterinary)</term><term>Birnaviridae Infections (virology)</term><term>California (epidemiology)</term><term>Chickens</term><term>Disease Outbreaks (veterinary)</term><term>Infectious bursal disease virus (classification)</term><term>Infectious bursal disease virus (genetics)</term><term>Infectious bursal disease virus (isolation & purification)</term><term>Infectious bursal disease virus (pathogenicity)</term><term>Poultry Diseases (epidemiology)</term><term>Poultry Diseases (virology)</term><term>Retrospective Studies</term><term>Reverse Transcriptase Polymerase Chain Reaction (veterinary)</term><term>Sequence Analysis, DNA (veterinary)</term></keywords><keywords scheme="MESH" type="geographic" qualifier="epidemiology" xml:lang="en"><term>California</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Infectious bursal disease virus</term></keywords><keywords scheme="MESH" qualifier="epidemiology" xml:lang="en"><term>Birnaviridae Infections</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Infectious bursal disease virus</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Infectious bursal disease virus</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Infectious bursal disease virus</term></keywords><keywords scheme="MESH" qualifier="veterinary" xml:lang="en"><term>Birnaviridae Infections</term><term>Disease Outbreaks</term><term>Reverse Transcriptase Polymerase Chain Reaction</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Birnaviridae Infections</term><term>Poultry Diseases</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Chickens</term><term>Retrospective Studies</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In December of 2008 very virulent infectious bursal disease virus (vvIBDV) was identified in a commercial flock in northern California. Since then several other backyard and commercial facilities in California have had flocks affected by the same strain and other unique (previously unseen) strains of IBDV. Previous to this incident, very virulent infectious bursal disease (vvIBD) had never been identified in North America. Following the initial outbreak in 2008, California became the first state to undertake a voluntary surveillance effort to try to determine the geographical prevalence of vvIBD based on sequencing of a portion of the segment A region of the vvIBDV genome. To date we have complete geographical information on approximately 500 separate accessions representing approximately 1500 birds from over 200 commercial (-85% of the facilities) and backyard facilities (-15% of the facilities) throughout the state. Sequencing of targeted regions of both the segment A and segment B regions of the genome has revealed three distinct types of IBDV in California chickens. One type is genetically and in pathogenically consistent with vvIBDV. The second and third types only have a segment A region consistent with vvIBDV. Geographic information system mapping coupled with spatial-temporal cluster analysis identified significant spatial and time-space clustering; however, no temporal clustering was noted. The lack of temporal clustering coupled with negative vvIBDV results in tested avian wildlife implies that avian wildlife in California do not currently appear to play a significant role in vvIBDV transmission. In the voluntary surveillance that was done in the Central Valley of California, which has a high density of commercial poultry, no positive farms were found when 142 of 504 farms were sampled. Given this level of sampling, the confidence (probability) of detecting an affected commercial flock was calculated to be between 28% and 81% depending on whether one or five hypothetically affected farms were affected.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">23678733</PMID><DateCreated><Year>2013</Year><Month>05</Month><Day>17</Day></DateCreated><DateCompleted><Year>2013</Year><Month>06</Month><Day>20</Day></DateCompleted><DateRevised><Year>2013</Year><Month>05</Month><Day>17</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0005-2086</ISSN><JournalIssue CitedMedium="Print"><Volume>57</Volume><Issue>1</Issue><PubDate><Year>2013</Year><Month>Mar</Month></PubDate></JournalIssue><Title>Avian diseases</Title><ISOAbbreviation>Avian Dis.</ISOAbbreviation></Journal><ArticleTitle>Historical, spatial, temporal, and time-space epidemiology of very virulent infectious bursal disease in California: a retrospective study 2008-2011.</ArticleTitle><Pagination><MedlinePgn>76-82</MedlinePgn></Pagination><Abstract><AbstractText>In December of 2008 very virulent infectious bursal disease virus (vvIBDV) was identified in a commercial flock in northern California. Since then several other backyard and commercial facilities in California have had flocks affected by the same strain and other unique (previously unseen) strains of IBDV. Previous to this incident, very virulent infectious bursal disease (vvIBD) had never been identified in North America. Following the initial outbreak in 2008, California became the first state to undertake a voluntary surveillance effort to try to determine the geographical prevalence of vvIBD based on sequencing of a portion of the segment A region of the vvIBDV genome. To date we have complete geographical information on approximately 500 separate accessions representing approximately 1500 birds from over 200 commercial (-85% of the facilities) and backyard facilities (-15% of the facilities) throughout the state. Sequencing of targeted regions of both the segment A and segment B regions of the genome has revealed three distinct types of IBDV in California chickens. One type is genetically and in pathogenically consistent with vvIBDV. The second and third types only have a segment A region consistent with vvIBDV. Geographic information system mapping coupled with spatial-temporal cluster analysis identified significant spatial and time-space clustering; however, no temporal clustering was noted. The lack of temporal clustering coupled with negative vvIBDV results in tested avian wildlife implies that avian wildlife in California do not currently appear to play a significant role in vvIBDV transmission. In the voluntary surveillance that was done in the Central Valley of California, which has a high density of commercial poultry, no positive farms were found when 142 of 504 farms were sampled. Given this level of sampling, the confidence (probability) of detecting an affected commercial flock was calculated to be between 28% and 81% depending on whether one or five hypothetically affected farms were affected.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Pitesky</LastName><ForeName>Maurice</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>California Department of Food and Agriculture, Animal Health Branch, 2800 Gateway Oaks, Sacramento, CA 95833, USA. Maurice.pitesky@cdfa.ca.gov</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Cataline</LastName><ForeName>Kristina</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Crossley</LastName><ForeName>Beate</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Poulos</LastName><ForeName>Michael</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Ramos</LastName><ForeName>Greg</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Willoughby</LastName><ForeName>Dave</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Woolcock</LastName><ForeName>Peter</ForeName><Initials>P</Initials></Author><Author ValidYN="Y"><LastName>Cutler</LastName><ForeName>Gregg</ForeName><Initials>G</Initials></Author><Author ValidYN="Y"><LastName>Bland</LastName><ForeName>Mark</ForeName><Initials>M</Initials></Author><Author ValidYN="Y"><LastName>Tran</LastName><ForeName>Johnny</ForeName><Initials>J</Initials></Author><Author ValidYN="Y"><LastName>Jackwood</LastName><ForeName>Daral</ForeName><Initials>D</Initials></Author><Author ValidYN="Y"><LastName>Allen</LastName><ForeName>Larry</ForeName><Initials>L</Initials></Author><Author ValidYN="Y"><LastName>Breitmeyer</LastName><ForeName>Rich</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Jones</LastName><ForeName>Annette</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Forsythe</LastName><ForeName>Kenneth</ForeName><Initials>K</Initials></Author><Author ValidYN="Y"><LastName>Sentíes-Cué</LastName><ForeName>C Gabriel</ForeName><Initials>CG</Initials></Author><Author ValidYN="Y"><LastName>Charlton</LastName><ForeName>Bruce</ForeName><Initials>B</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Avian Dis</MedlineTA><NlmUniqueID>0370617</NlmUniqueID><ISSNLinking>0005-2086</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018175" MajorTopicYN="N">Birnaviridae Infections</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002140" MajorTopicYN="N" Type="Geographic">California</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="N">epidemiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002645" MajorTopicYN="Y">Chickens</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004196" MajorTopicYN="N">Disease Outbreaks</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="Y">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D007243" MajorTopicYN="N">Infectious bursal disease virus</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName><QualifierName UI="Q000472" MajorTopicYN="Y">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011201" MajorTopicYN="N">Poultry Diseases</DescriptorName><QualifierName UI="Q000453" MajorTopicYN="Y">epidemiology</QualifierName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012189" MajorTopicYN="N">Retrospective Studies</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020133" MajorTopicYN="N">Reverse Transcriptase Polymerase Chain Reaction</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName><QualifierName UI="Q000662" MajorTopicYN="N">veterinary</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2013</Year><Month>5</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2013</Year><Month>5</Month><Day>18</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2013</Year><Month>6</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">23678733</ArticleId><ArticleId IdType="doi">10.1637/10302-071112-Reg.1</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>États-Unis</li></country><region><li>Californie</li></region></list><tree><noCountry><name sortKey="Allen, Larry" sort="Allen, Larry" uniqKey="Allen L" first="Larry" last="Allen">Larry Allen</name><name sortKey="Bland, Mark" sort="Bland, Mark" uniqKey="Bland M" first="Mark" last="Bland">Mark Bland</name><name sortKey="Breitmeyer, Rich" sort="Breitmeyer, Rich" uniqKey="Breitmeyer R" first="Rich" last="Breitmeyer">Rich Breitmeyer</name><name sortKey="Cataline, Kristina" sort="Cataline, Kristina" uniqKey="Cataline K" first="Kristina" last="Cataline">Kristina Cataline</name><name sortKey="Charlton, Bruce" sort="Charlton, Bruce" uniqKey="Charlton B" first="Bruce" last="Charlton">Bruce Charlton</name><name sortKey="Crossley, Beate" sort="Crossley, Beate" uniqKey="Crossley B" first="Beate" last="Crossley">Beate Crossley</name><name sortKey="Cutler, Gregg" sort="Cutler, Gregg" uniqKey="Cutler G" first="Gregg" last="Cutler">Gregg Cutler</name><name sortKey="Forsythe, Kenneth" sort="Forsythe, Kenneth" uniqKey="Forsythe K" first="Kenneth" last="Forsythe">Kenneth Forsythe</name><name sortKey="Jackwood, Daral" sort="Jackwood, Daral" uniqKey="Jackwood D" first="Daral" last="Jackwood">Daral Jackwood</name><name sortKey="Jones, Annette" sort="Jones, Annette" uniqKey="Jones A" first="Annette" last="Jones">Annette Jones</name><name sortKey="Poulos, Michael" sort="Poulos, Michael" uniqKey="Poulos M" first="Michael" last="Poulos">Michael Poulos</name><name sortKey="Ramos, Greg" sort="Ramos, Greg" uniqKey="Ramos G" first="Greg" last="Ramos">Greg Ramos</name><name sortKey="Senties Cue, C Gabriel" sort="Senties Cue, C Gabriel" uniqKey="Senties Cue C" first="C Gabriel" last="Sentíes-Cué">C Gabriel Sentíes-Cué</name><name sortKey="Tran, Johnny" sort="Tran, Johnny" uniqKey="Tran J" first="Johnny" last="Tran">Johnny Tran</name><name sortKey="Willoughby, Dave" sort="Willoughby, Dave" uniqKey="Willoughby D" first="Dave" last="Willoughby">Dave Willoughby</name><name sortKey="Woolcock, Peter" sort="Woolcock, Peter" uniqKey="Woolcock P" first="Peter" last="Woolcock">Peter Woolcock</name></noCountry><country name="États-Unis"><region name="Californie"><name sortKey="Pitesky, Maurice" sort="Pitesky, Maurice" uniqKey="Pitesky M" first="Maurice" last="Pitesky">Maurice Pitesky</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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