Biomedical semantics in the Semantic Web
Identifieur interne : 000031 ( Pmc/Checkpoint ); précédent : 000030; suivant : 000032Biomedical semantics in the Semantic Web
Auteurs : Andrea Splendiani [Royaume-Uni] ; Albert Burger [Royaume-Uni] ; Adrian Paschke [Allemagne] ; Paolo Romano [Italie] ; M Scott Marshall [Pays-Bas]Source :
- Journal of Biomedical Semantics [ 2041-1480 ] ; 2011.
Abstract
The Semantic Web offers an ideal platform for representing and linking biomedical information, which is a prerequisite for the development and application of analytical tools to address problems in data-intensive areas such as systems biology and translational medicine. As for any new paradigm, the adoption of the Semantic Web offers opportunities and poses questions and challenges to the life sciences scientific community: which technologies in the Semantic Web stack will be more beneficial for the life sciences? Is biomedical information too complex to benefit from simple interlinked representations? What are the implications of adopting a new paradigm for knowledge representation? What are the incentives for the adoption of the Semantic Web, and who are the facilitators? Is there going to be a Semantic Web revolution in the life sciences?
We report here a few reflections on these questions, following discussions at the SWAT4LS (Semantic Web Applications and Tools for Life Sciences) workshop series, of which this Journal of Biomedical Semantics special issue presents selected papers from the 2009 edition, held in Amsterdam on November 20th.
Url:
DOI: 10.1186/2041-1480-2-S1-S1
PubMed: 21388570
PubMed Central: 3105493
Affiliations:
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PMC:3105493Le document en format XML
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<front><div type="abstract" xml:lang="en"><p>The Semantic Web offers an ideal platform for representing and linking biomedical information, which is a prerequisite for the development and application of analytical tools to address problems in data-intensive areas such as systems biology and translational medicine. As for any new paradigm, the adoption of the Semantic Web offers opportunities and poses questions and challenges to the life sciences scientific community: which technologies in the Semantic Web stack will be more beneficial for the life sciences? Is biomedical information too complex to benefit from simple interlinked representations? What are the implications of adopting a new paradigm for knowledge representation? What are the incentives for the adoption of the Semantic Web, and who are the facilitators? Is there going to be a Semantic Web revolution in the life sciences?</p>
<p>We report here a few reflections on these questions, following discussions at the SWAT4LS (Semantic Web Applications and Tools for Life Sciences) workshop series, of which this Journal of Biomedical Semantics special issue presents selected papers from the 2009 edition, held in Amsterdam on November 20<sup>th</sup>
.</p>
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<front><journal-meta><journal-id journal-id-type="nlm-ta">J Biomed Semantics</journal-id>
<journal-title-group><journal-title>Journal of Biomedical Semantics</journal-title>
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<article-id pub-id-type="doi">10.1186/2041-1480-2-S1-S1</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Research</subject>
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<title-group><article-title>Biomedical semantics in the Semantic Web</article-title>
</title-group>
<contrib-group><contrib contrib-type="author" id="A1"><name><surname>Splendiani</surname>
<given-names>Andrea</given-names>
</name>
<xref ref-type="aff" rid="I1">1</xref>
<email>andrea.splendiani@bbsrc.ac.uk</email>
</contrib>
<contrib contrib-type="author" id="A2"><name><surname>Burger</surname>
<given-names>Albert</given-names>
</name>
<xref ref-type="aff" rid="I2">2</xref>
<email>albert.burger@me.com</email>
</contrib>
<contrib contrib-type="author" id="A3"><name><surname>Paschke</surname>
<given-names>Adrian</given-names>
</name>
<xref ref-type="aff" rid="I3">3</xref>
<email>adrian.paschke@gmx.de</email>
</contrib>
<contrib contrib-type="author" id="A4"><name><surname>Romano</surname>
<given-names>Paolo</given-names>
</name>
<xref ref-type="aff" rid="I4">4</xref>
<email>paolo.romano@istge.it</email>
</contrib>
<contrib contrib-type="author" corresp="yes" id="A5"><name><surname>Marshall</surname>
<given-names>M Scott</given-names>
</name>
<xref ref-type="aff" rid="I5">5</xref>
<email>marshall@science.uva.nl</email>
</contrib>
</contrib-group>
<aff id="I1"><label>1</label>
Rothamsted Research, AL5 J2Q, Harpenden, UK</aff>
<aff id="I2"><label>2</label>
Heriot-Watt University and MRC Human Genetics Unit, Edinburgh, UK</aff>
<aff id="I3"><label>3</label>
Freie Universitaet Berlin, Berlin, Germany</aff>
<aff id="I4"><label>4</label>
National Cancer Research Institute of Genoa, I-16132, Italy</aff>
<aff id="I5"><label>5</label>
Leiden University Medical Center / University of Amsterdam, The Netherlands</aff>
<pub-date pub-type="collection"><year>2011</year>
</pub-date>
<pub-date pub-type="epub"><day>7</day>
<month>3</month>
<year>2011</year>
</pub-date>
<volume>2</volume>
<issue>Suppl 1</issue>
<supplement><named-content content-type="supplement-title">Semantic Web Applications and Tools for Life Sciences (SWAT4LS), 2009</named-content>
<named-content content-type="supplement-editor">Andrea Splendiani, Albert Burger, Adrian Paschke, Paolo Romano and M Scott Marshall</named-content>
</supplement>
<fpage>S1</fpage>
<lpage>S1</lpage>
<permissions><copyright-statement>Copyright ©2011 Splendiani et al; licensee BioMed Central Ltd.</copyright-statement>
<copyright-year>2011</copyright-year>
<copyright-holder>Splendiani et al; licensee BioMed Central Ltd.</copyright-holder>
<license license-type="open-access" xlink:href="http://creativecommons.org/licenses/by/2.0"><license-p>This is an open access article distributed under the terms of the Creative Commons Attribution License (<ext-link ext-link-type="uri" xlink:href="http://creativecommons.org/licenses/by/2.0">http://creativecommons.org/licenses/by/2.0</ext-link>
), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.</license-p>
</license>
</permissions>
<self-uri xlink:href="http://www.jbiomedsem.com/content/2/S1/S1"></self-uri>
<abstract><p>The Semantic Web offers an ideal platform for representing and linking biomedical information, which is a prerequisite for the development and application of analytical tools to address problems in data-intensive areas such as systems biology and translational medicine. As for any new paradigm, the adoption of the Semantic Web offers opportunities and poses questions and challenges to the life sciences scientific community: which technologies in the Semantic Web stack will be more beneficial for the life sciences? Is biomedical information too complex to benefit from simple interlinked representations? What are the implications of adopting a new paradigm for knowledge representation? What are the incentives for the adoption of the Semantic Web, and who are the facilitators? Is there going to be a Semantic Web revolution in the life sciences?</p>
<p>We report here a few reflections on these questions, following discussions at the SWAT4LS (Semantic Web Applications and Tools for Life Sciences) workshop series, of which this Journal of Biomedical Semantics special issue presents selected papers from the 2009 edition, held in Amsterdam on November 20<sup>th</sup>
.</p>
</abstract>
<conference><conf-date><day>20</day>
<month>11</month>
<year>2009</year>
</conf-date>
<conf-name>Semantic Web Applications and Tools for Life Sciences (SWAT4LS), 2009</conf-name>
<conf-loc>Amsterdam, The Netherlands</conf-loc>
</conference>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>Allemagne</li>
<li>Italie</li>
<li>Pays-Bas</li>
<li>Royaume-Uni</li>
</country>
<region><li>Berlin</li>
<li>Écosse</li>
</region>
<settlement><li>Berlin</li>
<li>Édimbourg</li>
</settlement>
</list>
<tree><country name="Royaume-Uni"><noRegion><name sortKey="Splendiani, Andrea" sort="Splendiani, Andrea" uniqKey="Splendiani A" first="Andrea" last="Splendiani">Andrea Splendiani</name>
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<country name="Allemagne"><region name="Berlin"><name sortKey="Paschke, Adrian" sort="Paschke, Adrian" uniqKey="Paschke A" first="Adrian" last="Paschke">Adrian Paschke</name>
</region>
</country>
<country name="Italie"><noRegion><name sortKey="Romano, Paolo" sort="Romano, Paolo" uniqKey="Romano P" first="Paolo" last="Romano">Paolo Romano</name>
</noRegion>
</country>
<country name="Pays-Bas"><noRegion><name sortKey="Marshall, M Scott" sort="Marshall, M Scott" uniqKey="Marshall M" first="M Scott" last="Marshall">M Scott Marshall</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
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