LINNAEUS: A species name identification system for biomedical literature
Identifieur interne : 000603 ( Main/Exploration ); précédent : 000602; suivant : 000604LINNAEUS: A species name identification system for biomedical literature
Auteurs : Martin Gerner [Royaume-Uni] ; Goran Nenadic [Royaume-Uni] ; Casey M. Bergman [Royaume-Uni]Source :
- BMC Bioinformatics [ 1471-2105 ] ; 2010.
Abstract
The task of recognizing and identifying species names in biomedical literature has recently been regarded as critical for a number of applications in text and data mining, including gene name recognition, species-specific document retrieval, and semantic enrichment of biomedical articles.
In this paper we describe an open-source species name recognition and normalization software system, LINNAEUS, and evaluate its performance relative to several automatically generated biomedical corpora, as well as a novel corpus of full-text documents manually annotated for species mentions. LINNAEUS uses a dictionary-based approach (implemented as an efficient deterministic finite-state automaton) to identify species names and a set of heuristics to resolve ambiguous mentions. When compared against our manually annotated corpus, LINNAEUS performs with 94% recall and 97% precision at the mention level, and 98% recall and 90% precision at the document level. Our system successfully solves the problem of disambiguating uncertain species mentions, with 97% of all mentions in PubMed Central full-text documents resolved to unambiguous NCBI taxonomy identifiers.
LINNAEUS is an open source, stand-alone software system capable of recognizing and normalizing species name mentions with speed and accuracy, and can therefore be integrated into a range of bioinformatics and text-mining applications. The software and manually annotated corpus can be downloaded freely at
Url:
DOI: 10.1186/1471-2105-11-85
PubMed: 20149233
PubMed Central: 2836304
Affiliations:
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Le document en format XML
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>The task of recognizing and identifying species names in biomedical literature has recently been regarded as critical for a number of applications in text and data mining, including gene name recognition, species-specific document retrieval, and semantic enrichment of biomedical articles.</p>
</sec>
<sec><title>Results</title>
<p>In this paper we describe an open-source species name recognition and normalization software system, LINNAEUS, and evaluate its performance relative to several automatically generated biomedical corpora, as well as a novel corpus of full-text documents manually annotated for species mentions. LINNAEUS uses a dictionary-based approach (implemented as an efficient deterministic finite-state automaton) to identify species names and a set of heuristics to resolve ambiguous mentions. When compared against our manually annotated corpus, LINNAEUS performs with 94% recall and 97% precision at the mention level, and 98% recall and 90% precision at the document level. Our system successfully solves the problem of disambiguating uncertain species mentions, with 97% of all mentions in PubMed Central full-text documents resolved to unambiguous NCBI taxonomy identifiers.</p>
</sec>
<sec><title>Conclusions</title>
<p>LINNAEUS is an open source, stand-alone software system capable of recognizing and normalizing species name mentions with speed and accuracy, and can therefore be integrated into a range of bioinformatics and text-mining applications. The software and manually annotated corpus can be downloaded freely at <ext-link ext-link-type="uri" xlink:href="http://linnaeus.sourceforge.net/">http://linnaeus.sourceforge.net/</ext-link>
.</p>
</sec>
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<back><div1 type="bibliography"><listBibl><biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Jensen, Lj" uniqKey="Jensen L">LJ Jensen</name>
</author>
<author><name sortKey="Saric, J" uniqKey="Saric J">J Saric</name>
</author>
<author><name sortKey="Bork, P" uniqKey="Bork P">P Bork</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Krallinger, M" uniqKey="Krallinger M">M Krallinger</name>
</author>
<author><name sortKey="Hirschman, L" uniqKey="Hirschman L">L Hirschman</name>
</author>
<author><name sortKey="Valencia, A" uniqKey="Valencia A">A Valencia</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hanisch, D" uniqKey="Hanisch D">D Hanisch</name>
</author>
<author><name sortKey="Fundel, K" uniqKey="Fundel K">K Fundel</name>
</author>
<author><name sortKey="Mevissen, Ht" uniqKey="Mevissen H">HT Mevissen</name>
</author>
<author><name sortKey="Zimmer, R" uniqKey="Zimmer R">R Zimmer</name>
</author>
<author><name sortKey="Fluck, J" uniqKey="Fluck J">J Fluck</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hakenberg, J" uniqKey="Hakenberg J">J Hakenberg</name>
</author>
<author><name sortKey="Plake, C" uniqKey="Plake C">C Plake</name>
</author>
<author><name sortKey="Leaman, R" uniqKey="Leaman R">R Leaman</name>
</author>
<author><name sortKey="Schroeder, M" uniqKey="Schroeder M">M Schroeder</name>
</author>
<author><name sortKey="Gonzales, G" uniqKey="Gonzales G">G Gonzales</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, X" uniqKey="Wang X">X Wang</name>
</author>
<author><name sortKey="Matthews, M" uniqKey="Matthews M">M Matthews</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Krallinger, M" uniqKey="Krallinger M">M Krallinger</name>
</author>
<author><name sortKey="Leitner, F" uniqKey="Leitner F">F Leitner</name>
</author>
<author><name sortKey="Rodriguez Penagos, C" uniqKey="Rodriguez Penagos C">C Rodriguez-Penagos</name>
</author>
<author><name sortKey="Valencia, A" uniqKey="Valencia A">A Valencia</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kim, J D" uniqKey="Kim J">J-D Kim</name>
</author>
<author><name sortKey="Ohta, T" uniqKey="Ohta T">T Ohta</name>
</author>
<author><name sortKey="Pyysalo, S" uniqKey="Pyysalo S">S Pyysalo</name>
</author>
<author><name sortKey="Kano, Y" uniqKey="Kano Y">Y Kano</name>
</author>
<author><name sortKey="Tsujii, Ji" uniqKey="Tsujii J">Ji Tsujii</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kappeler, T" uniqKey="Kappeler T">T Kappeler</name>
</author>
<author><name sortKey="Kaljurand, K" uniqKey="Kaljurand K">K Kaljurand</name>
</author>
<author><name sortKey="Rinaldi, F" uniqKey="Rinaldi F">F Rinaldi</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Leary, Pr" uniqKey="Leary P">PR Leary</name>
</author>
<author><name sortKey="Remsen, Dp" uniqKey="Remsen D">DP Remsen</name>
</author>
<author><name sortKey="Norton, Cn" uniqKey="Norton C">CN Norton</name>
</author>
<author><name sortKey="Patterson, Dj" uniqKey="Patterson D">DJ Patterson</name>
</author>
<author><name sortKey="Sarkar, In" uniqKey="Sarkar I">IN Sarkar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Page, Rd" uniqKey="Page R">RD Page</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sarkar, In" uniqKey="Sarkar I">IN Sarkar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ding, J" uniqKey="Ding J">J Ding</name>
</author>
<author><name sortKey="Viswanathan, K" uniqKey="Viswanathan K">K Viswanathan</name>
</author>
<author><name sortKey="Berleant, D" uniqKey="Berleant D">D Berleant</name>
</author>
<author><name sortKey="Hughes, L" uniqKey="Hughes L">L Hughes</name>
</author>
<author><name sortKey="Wurtele, E" uniqKey="Wurtele E">E Wurtele</name>
</author>
<author><name sortKey="Ashlock, D" uniqKey="Ashlock D">D Ashlock</name>
</author>
<author><name sortKey="Dickerson, J" uniqKey="Dickerson J">J Dickerson</name>
</author>
<author><name sortKey="Fulmer, A" uniqKey="Fulmer A">A Fulmer</name>
</author>
<author><name sortKey="Schnable, P" uniqKey="Schnable P">P Schnable</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Fink, Jl" uniqKey="Fink J">JL Fink</name>
</author>
<author><name sortKey="Kushch, S" uniqKey="Kushch S">S Kushch</name>
</author>
<author><name sortKey="Williams, Pr" uniqKey="Williams P">PR Williams</name>
</author>
<author><name sortKey="Bourne, Pe" uniqKey="Bourne P">PE Bourne</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Shotton, D" uniqKey="Shotton D">D Shotton</name>
</author>
<author><name sortKey="Portwin, K" uniqKey="Portwin K">K Portwin</name>
</author>
<author><name sortKey="Klyne, G" uniqKey="Klyne G">G Klyne</name>
</author>
<author><name sortKey="Miles, A" uniqKey="Miles A">A Miles</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Bisby, Fa" uniqKey="Bisby F">FA Bisby</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Zauner, H" uniqKey="Zauner H">H Zauner</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Patterson, Dj" uniqKey="Patterson D">DJ Patterson</name>
</author>
<author><name sortKey="Remsen, D" uniqKey="Remsen D">D Remsen</name>
</author>
<author><name sortKey="Marino, Wa" uniqKey="Marino W">WA Marino</name>
</author>
<author><name sortKey="Norton, C" uniqKey="Norton C">C Norton</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Liu, H" uniqKey="Liu H">H Liu</name>
</author>
<author><name sortKey="Aronson, Ar" uniqKey="Aronson A">AR Aronson</name>
</author>
<author><name sortKey="Friedman, C" uniqKey="Friedman C">C Friedman</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Linnaeus, C" uniqKey="Linnaeus C">C Linnaeus</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Koning, D" uniqKey="Koning D">D Koning</name>
</author>
<author><name sortKey="Sarkar, In" uniqKey="Sarkar I">IN Sarkar</name>
</author>
<author><name sortKey="Moritz, T" uniqKey="Moritz T">T Moritz</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Sautter, G" uniqKey="Sautter G">G Sautter</name>
</author>
<author><name sortKey="Bohm, K" uniqKey="Bohm K">K Böhm</name>
</author>
<author><name sortKey="Agosti, D" uniqKey="Agosti D">D Agosti</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sautter, G" uniqKey="Sautter G">G Sautter</name>
</author>
<author><name sortKey="Bohm, K" uniqKey="Bohm K">K Bohm</name>
</author>
<author><name sortKey="Agosti, D" uniqKey="Agosti D">D Agosti</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Plake, C" uniqKey="Plake C">C Plake</name>
</author>
<author><name sortKey="Schiemann, T" uniqKey="Schiemann T">T Schiemann</name>
</author>
<author><name sortKey="Pankalla, M" uniqKey="Pankalla M">M Pankalla</name>
</author>
<author><name sortKey="Hakenberg, J" uniqKey="Hakenberg J">J Hakenberg</name>
</author>
<author><name sortKey="Leser, U" uniqKey="Leser U">U Leser</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rebholz Schuhmann, D" uniqKey="Rebholz Schuhmann D">D Rebholz-Schuhmann</name>
</author>
<author><name sortKey="Arregui, M" uniqKey="Arregui M">M Arregui</name>
</author>
<author><name sortKey="Gaudan, M" uniqKey="Gaudan M">M Gaudan</name>
</author>
<author><name sortKey="Kirsch, H" uniqKey="Kirsch H">H Kirsch</name>
</author>
<author><name sortKey="Jimeno, A" uniqKey="Jimeno A">A Jimeno</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Kerrien, S" uniqKey="Kerrien S">S Kerrien</name>
</author>
<author><name sortKey="Alam Faruque, Y" uniqKey="Alam Faruque Y">Y Alam-Faruque</name>
</author>
<author><name sortKey="Aranda, B" uniqKey="Aranda B">B Aranda</name>
</author>
<author><name sortKey="Bancarz, I" uniqKey="Bancarz I">I Bancarz</name>
</author>
<author><name sortKey="Bridge, A" uniqKey="Bridge A">A Bridge</name>
</author>
<author><name sortKey="Derow, C" uniqKey="Derow C">C Derow</name>
</author>
<author><name sortKey="Dimmer, E" uniqKey="Dimmer E">E Dimmer</name>
</author>
<author><name sortKey="Feuermann, M" uniqKey="Feuermann M">M Feuermann</name>
</author>
<author><name sortKey="Friedrichsen, A" uniqKey="Friedrichsen A">A Friedrichsen</name>
</author>
<author><name sortKey="Huntley, R" uniqKey="Huntley R">R Huntley</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, X" uniqKey="Wang X">X Wang</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, X" uniqKey="Wang X">X Wang</name>
</author>
<author><name sortKey="Grover, C" uniqKey="Grover C">C Grover</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Wang, X" uniqKey="Wang X">X Wang</name>
</author>
<author><name sortKey="Tsujii, J" uniqKey="Tsujii J">J Tsujii</name>
</author>
<author><name sortKey="Ananiadou, S" uniqKey="Ananiadou S">S Ananiadou</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Aerts, S" uniqKey="Aerts S">S Aerts</name>
</author>
<author><name sortKey="Haeussler, M" uniqKey="Haeussler M">M Haeussler</name>
</author>
<author><name sortKey="Van Vooren, S" uniqKey="Van Vooren S">S van Vooren</name>
</author>
<author><name sortKey="Griffith, Ol" uniqKey="Griffith O">OL Griffith</name>
</author>
<author><name sortKey="Hulpiau, P" uniqKey="Hulpiau P">P Hulpiau</name>
</author>
<author><name sortKey="Jones, Sj" uniqKey="Jones S">SJ Jones</name>
</author>
<author><name sortKey="Montgomery, Sb" uniqKey="Montgomery S">SB Montgomery</name>
</author>
<author><name sortKey="Bergman, Cm" uniqKey="Bergman C">CM Bergman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Griffith, Ol" uniqKey="Griffith O">OL Griffith</name>
</author>
<author><name sortKey="Montgomery, Sb" uniqKey="Montgomery S">SB Montgomery</name>
</author>
<author><name sortKey="Bernier, B" uniqKey="Bernier B">B Bernier</name>
</author>
<author><name sortKey="Chu, B" uniqKey="Chu B">B Chu</name>
</author>
<author><name sortKey="Kasaian, K" uniqKey="Kasaian K">K Kasaian</name>
</author>
<author><name sortKey="Aerts, S" uniqKey="Aerts S">S Aerts</name>
</author>
<author><name sortKey="Mahony, S" uniqKey="Mahony S">S Mahony</name>
</author>
<author><name sortKey="Sleumer, Mc" uniqKey="Sleumer M">MC Sleumer</name>
</author>
<author><name sortKey="Bilenky, M" uniqKey="Bilenky M">M Bilenky</name>
</author>
<author><name sortKey="Haeussler, M" uniqKey="Haeussler M">M Haeussler</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Okazaki, N" uniqKey="Okazaki N">N Okazaki</name>
</author>
<author><name sortKey="Ananiadou, S" uniqKey="Ananiadou S">S Ananiadou</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Hopcroft, J" uniqKey="Hopcroft J">J Hopcroft</name>
</author>
<author><name sortKey="Ullman, J" uniqKey="Ullman J">J Ullman</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Maglott, D" uniqKey="Maglott D">D Maglott</name>
</author>
<author><name sortKey="Ostell, J" uniqKey="Ostell J">J Ostell</name>
</author>
<author><name sortKey="Pruitt, Kd" uniqKey="Pruitt K">KD Pruitt</name>
</author>
<author><name sortKey="Tatusova, T" uniqKey="Tatusova T">T Tatusova</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cochrane, G" uniqKey="Cochrane G">G Cochrane</name>
</author>
<author><name sortKey="Akhtar, R" uniqKey="Akhtar R">R Akhtar</name>
</author>
<author><name sortKey="Bonfield, J" uniqKey="Bonfield J">J Bonfield</name>
</author>
<author><name sortKey="Bower, L" uniqKey="Bower L">L Bower</name>
</author>
<author><name sortKey="Demiralp, F" uniqKey="Demiralp F">F Demiralp</name>
</author>
<author><name sortKey="Faruque, N" uniqKey="Faruque N">N Faruque</name>
</author>
<author><name sortKey="Gibson, R" uniqKey="Gibson R">R Gibson</name>
</author>
<author><name sortKey="Hoad, G" uniqKey="Hoad G">G Hoad</name>
</author>
<author><name sortKey="Hubbard, T" uniqKey="Hubbard T">T Hubbard</name>
</author>
<author><name sortKey="Hunter, C" uniqKey="Hunter C">C Hunter</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Miller, H" uniqKey="Miller H">H Miller</name>
</author>
<author><name sortKey="Norton, Cn" uniqKey="Norton C">CN Norton</name>
</author>
<author><name sortKey="Sarkar, In" uniqKey="Sarkar I">IN Sarkar</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Cohen, J" uniqKey="Cohen J">J Cohen</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Xu, S" uniqKey="Xu S">S Xu</name>
</author>
<author><name sortKey="Mccusker, J" uniqKey="Mccusker J">J McCusker</name>
</author>
<author><name sortKey="Krauthammer, M" uniqKey="Krauthammer M">M Krauthammer</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Rodriguez Esteban, R" uniqKey="Rodriguez Esteban R">R Rodriguez-Esteban</name>
</author>
<author><name sortKey="Iossifov, I" uniqKey="Iossifov I">I Iossifov</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Chen, L" uniqKey="Chen L">L Chen</name>
</author>
<author><name sortKey="Liu, H" uniqKey="Liu H">H Liu</name>
</author>
<author><name sortKey="Friedman, C" uniqKey="Friedman C">C Friedman</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sarkar, In" uniqKey="Sarkar I">IN Sarkar</name>
</author>
<author><name sortKey="Schenk, R" uniqKey="Schenk R">R Schenk</name>
</author>
<author><name sortKey="Norton, Cn" uniqKey="Norton C">CN Norton</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Hoffmann, R" uniqKey="Hoffmann R">R Hoffmann</name>
</author>
<author><name sortKey="Valencia, A" uniqKey="Valencia A">A Valencia</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Barre Sinoussi, F" uniqKey="Barre Sinoussi F">F Barré-Sinoussi</name>
</author>
<author><name sortKey="Chermann, J" uniqKey="Chermann J">J Chermann</name>
</author>
<author><name sortKey="Rey, F" uniqKey="Rey F">F Rey</name>
</author>
<author><name sortKey="Nugeyre, M" uniqKey="Nugeyre M">M Nugeyre</name>
</author>
<author><name sortKey="Chamaret, S" uniqKey="Chamaret S">S Chamaret</name>
</author>
<author><name sortKey="Gruest, J" uniqKey="Gruest J">J Gruest</name>
</author>
<author><name sortKey="Dauguet, C" uniqKey="Dauguet C">C Dauguet</name>
</author>
<author><name sortKey="Axler Blin, C" uniqKey="Axler Blin C">C Axler-Blin</name>
</author>
<author><name sortKey="Vezinet Brun, F" uniqKey="Vezinet Brun F">F Vézinet-Brun</name>
</author>
<author><name sortKey="Rouzioux, C" uniqKey="Rouzioux C">C Rouzioux</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Coffin, J" uniqKey="Coffin J">J Coffin</name>
</author>
<author><name sortKey="Haase, A" uniqKey="Haase A">A Haase</name>
</author>
<author><name sortKey="Levy, Ja" uniqKey="Levy J">JA Levy</name>
</author>
<author><name sortKey="Montagnier, L" uniqKey="Montagnier L">L Montagnier</name>
</author>
<author><name sortKey="Oroszlan, S" uniqKey="Oroszlan S">S Oroszlan</name>
</author>
<author><name sortKey="Teich, N" uniqKey="Teich N">N Teich</name>
</author>
<author><name sortKey="Temin, H" uniqKey="Temin H">H Temin</name>
</author>
<author><name sortKey="Toyoshima, K" uniqKey="Toyoshima K">K Toyoshima</name>
</author>
<author><name sortKey="Varmus, H" uniqKey="Varmus H">H Varmus</name>
</author>
<author><name sortKey="Vogt, P" uniqKey="Vogt P">P Vogt</name>
</author>
</analytic>
</biblStruct>
<biblStruct></biblStruct>
<biblStruct><analytic><author><name sortKey="Shah, Pk" uniqKey="Shah P">PK Shah</name>
</author>
<author><name sortKey="Perez Iratxeta, C" uniqKey="Perez Iratxeta C">C Perez-Iratxeta</name>
</author>
<author><name sortKey="Bork, P" uniqKey="Bork P">P Bork</name>
</author>
<author><name sortKey="Andrade, Ma" uniqKey="Andrade M">MA Andrade</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Schuemie, Mj" uniqKey="Schuemie M">MJ Schuemie</name>
</author>
<author><name sortKey="Weeber, M" uniqKey="Weeber M">M Weeber</name>
</author>
<author><name sortKey="Schijvenaars, Bj" uniqKey="Schijvenaars B">BJ Schijvenaars</name>
</author>
<author><name sortKey="Van Mulligen, Em" uniqKey="Van Mulligen E">EM van Mulligen</name>
</author>
<author><name sortKey="Eijk, Cc Van Der" uniqKey="Eijk C">CC van der Eijk</name>
</author>
<author><name sortKey="Jelier, R" uniqKey="Jelier R">R Jelier</name>
</author>
<author><name sortKey="Mons, B" uniqKey="Mons B">B Mons</name>
</author>
<author><name sortKey="Kors, Ja" uniqKey="Kors J">JA Kors</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Corney, Dp" uniqKey="Corney D">DP Corney</name>
</author>
<author><name sortKey="Buxton, Bf" uniqKey="Buxton B">BF Buxton</name>
</author>
<author><name sortKey="Langdon, Wb" uniqKey="Langdon W">WB Langdon</name>
</author>
<author><name sortKey="Jones, Dt" uniqKey="Jones D">DT Jones</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Eales, Jm" uniqKey="Eales J">JM Eales</name>
</author>
<author><name sortKey="Pinney, Jw" uniqKey="Pinney J">JW Pinney</name>
</author>
<author><name sortKey="Stevens, Rd" uniqKey="Stevens R">RD Stevens</name>
</author>
<author><name sortKey="Robertson, Dl" uniqKey="Robertson D">DL Robertson</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lin, J" uniqKey="Lin J">J Lin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Sarntivijai, S" uniqKey="Sarntivijai S">S Sarntivijai</name>
</author>
<author><name sortKey="Ade, As" uniqKey="Ade A">AS Ade</name>
</author>
<author><name sortKey="Athey, Bd" uniqKey="Athey B">BD Athey</name>
</author>
<author><name sortKey="States, Dj" uniqKey="States D">DJ States</name>
</author>
</analytic>
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</div1>
</back>
</TEI>
<affiliations><list><country><li>Royaume-Uni</li>
</country>
<region><li>Angleterre</li>
<li>Grand Manchester</li>
</region>
<settlement><li>Manchester</li>
</settlement>
<orgName><li>Université de Manchester</li>
</orgName>
</list>
<tree><country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Gerner, Martin" sort="Gerner, Martin" uniqKey="Gerner M" first="Martin" last="Gerner">Martin Gerner</name>
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<name sortKey="Bergman, Casey M" sort="Bergman, Casey M" uniqKey="Bergman C" first="Casey M" last="Bergman">Casey M. Bergman</name>
<name sortKey="Nenadic, Goran" sort="Nenadic, Goran" uniqKey="Nenadic G" first="Goran" last="Nenadic">Goran Nenadic</name>
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</record>
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