Sequence and organization of southern bean mosaic virus genomic RNA
Identifieur interne : 002B53 ( Istex/Corpus ); précédent : 002B52; suivant : 002B54Sequence and organization of southern bean mosaic virus genomic RNA
Auteurs : Shixuan Wu ; Claire A. Rinehart ; Paul KaesbergSource :
- Virology [ 0042-6822 ] ; 1987.
Abstract
The genomic RNA sequence of the cowpea strain of southern bean mosaic virus (SBMV-C) has been determined. The genome is 4194 nucleotides in length and has four open reading frames. A 5′ proximal open frame, from base 49 to base 603, corresponds to the length of the P4 proteins translated in cell-free extracts from full-length and smaller virion RNA. The largest open frame extends from base 570 to base 3437 and encodes the two largest proteins translated in cell-free extracts from full-length virion RNA. Segments of this open reading frame's predicted amino acid sequence resemble those of known viral RNA polymerases, ATP-binding proteins, and viral genome-linked proteins. A third open frame extends from base 1895 to base 2380 and has not been correlated with an in vitro translation product. The fourth open reading frame is located in the 3′ terminal region of the genome extending from base 3217 to base 4053. This frame encodes the SBMV capsid protein which is translated from subgenomic, virion RNA.
Url:
DOI: 10.1016/0042-6822(87)90172-3
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Rinehart</name><affiliation><mods:affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</mods:affiliation></affiliation></author><author><name sortKey="Kaesberg, Paul" sort="Kaesberg, Paul" uniqKey="Kaesberg P" first="Paul" last="Kaesberg">Paul Kaesberg</name><affiliation><mods:affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</mods:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:908DF6B6B1663C9A939BB6DCE72317B779599DA8</idno><date when="1987" year="1987">1987</date><idno type="doi">10.1016/0042-6822(87)90172-3</idno><idno type="url">https://api.istex.fr/document/908DF6B6B1663C9A939BB6DCE72317B779599DA8/fulltext/pdf</idno><idno type="wicri:Area/Istex/Corpus">002B53</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a">Sequence and organization of southern bean mosaic virus genomic RNA</title><author><name sortKey="Wu, Shixuan" sort="Wu, Shixuan" uniqKey="Wu S" first="Shixuan" last="Wu">Shixuan Wu</name><affiliation><mods:affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</mods:affiliation></affiliation></author><author><name sortKey="Rinehart, Claire A" sort="Rinehart, Claire A" uniqKey="Rinehart C" first="Claire A." last="Rinehart">Claire A. Rinehart</name><affiliation><mods:affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</mods:affiliation></affiliation></author><author><name sortKey="Kaesberg, Paul" sort="Kaesberg, Paul" uniqKey="Kaesberg P" first="Paul" last="Kaesberg">Paul Kaesberg</name><affiliation><mods:affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</mods:affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j">Virology</title><title level="j" type="abbrev">YVIRO</title><idno type="ISSN">0042-6822</idno><imprint><publisher>ELSEVIER</publisher><date type="published" when="1987">1987</date><biblScope unit="volume">161</biblScope><biblScope unit="issue">1</biblScope><biblScope unit="page" from="73">73</biblScope><biblScope unit="page" to="80">80</biblScope></imprint><idno type="ISSN">0042-6822</idno></series><idno type="istex">908DF6B6B1663C9A939BB6DCE72317B779599DA8</idno><idno type="DOI">10.1016/0042-6822(87)90172-3</idno><idno type="PII">0042-6822(87)90172-3</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">0042-6822</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The genomic RNA sequence of the cowpea strain of southern bean mosaic virus (SBMV-C) has been determined. The genome is 4194 nucleotides in length and has four open reading frames. A 5′ proximal open frame, from base 49 to base 603, corresponds to the length of the P4 proteins translated in cell-free extracts from full-length and smaller virion RNA. The largest open frame extends from base 570 to base 3437 and encodes the two largest proteins translated in cell-free extracts from full-length virion RNA. Segments of this open reading frame's predicted amino acid sequence resemble those of known viral RNA polymerases, ATP-binding proteins, and viral genome-linked proteins. A third open frame extends from base 1895 to base 2380 and has not been correlated with an in vitro translation product. The fourth open reading frame is located in the 3′ terminal region of the genome extending from base 3217 to base 4053. This frame encodes the SBMV capsid protein which is translated from subgenomic, virion RNA.</div></front></TEI><istex><corpusName>elsevier</corpusName><author><json:item><name>Shixuan Wu</name><affiliations><json:string>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</json:string></affiliations></json:item><json:item><name>Claire A. Rinehart</name><affiliations><json:string>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</json:string></affiliations></json:item><json:item><name>Paul Kaesberg</name><affiliations><json:string>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</json:string></affiliations></json:item></author><language><json:string>eng</json:string></language><abstract>The genomic RNA sequence of the cowpea strain of southern bean mosaic virus (SBMV-C) has been determined. The genome is 4194 nucleotides in length and has four open reading frames. A 5′ proximal open frame, from base 49 to base 603, corresponds to the length of the P4 proteins translated in cell-free extracts from full-length and smaller virion RNA. The largest open frame extends from base 570 to base 3437 and encodes the two largest proteins translated in cell-free extracts from full-length virion RNA. Segments of this open reading frame's predicted amino acid sequence resemble those of known viral RNA polymerases, ATP-binding proteins, and viral genome-linked proteins. A third open frame extends from base 1895 to base 2380 and has not been correlated with an in vitro translation product. The fourth open reading frame is located in the 3′ terminal region of the genome extending from base 3217 to base 4053. 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The genome is 4194 nucleotides in length and has four open reading frames. A 5′ proximal open frame, from base 49 to base 603, corresponds to the length of the P4 proteins translated in cell-free extracts from full-length and smaller virion RNA. The largest open frame extends from base 570 to base 3437 and encodes the two largest proteins translated in cell-free extracts from full-length virion RNA. Segments of this open reading frame's predicted amino acid sequence resemble those of known viral RNA polymerases, ATP-binding proteins, and viral genome-linked proteins. A third open frame extends from base 1895 to base 2380 and has not been correlated with an in vitro translation product. The fourth open reading frame is located in the 3′ terminal region of the genome extending from base 3217 to base 4053. This frame encodes the SBMV capsid protein which is translated from subgenomic, virion RNA.</p></abstract></profileDesc><revisionDesc><change when="1987-07-07">Registration</change><change when="1987">Published</change></revisionDesc></teiHeader></istex:fulltextTEI></fulltext><metadata><istex:metadataXml wicri:clean="Elsevier, elements deleted: tail"><istex:xmlDeclaration>version="1.0" encoding="utf-8"</istex:xmlDeclaration><istex:docType PUBLIC="-//ES//DTD journal article DTD version 4.5.2//EN//XML" URI="art452.dtd" name="istex:docType"></istex:docType><istex:document><converted-article version="4.5.2" docsubtype="fla"><item-info><jid>YVIRO</jid><aid>87901723</aid><ce:pii>0042-6822(87)90172-3</ce:pii><ce:doi>10.1016/0042-6822(87)90172-3</ce:doi><ce:copyright type="unknown" year="1987"></ce:copyright></item-info><head><ce:title>Sequence and organization of southern bean mosaic virus genomic RNA</ce:title><ce:author-group><ce:author><ce:given-name>Shixuan</ce:given-name><ce:surname>Wu</ce:surname><ce:cross-ref refid="FN1"><ce:sup>1</ce:sup></ce:cross-ref></ce:author><ce:author><ce:given-name>Claire A.</ce:given-name><ce:surname>Rinehart</ce:surname></ce:author><ce:author><ce:given-name>Paul</ce:given-name><ce:surname>Kaesberg</ce:surname><ce:cross-ref refid="COR1"><ce:sup>2</ce:sup></ce:cross-ref></ce:author><ce:affiliation><ce:textfn>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</ce:textfn></ce:affiliation><ce:correspondence id="COR1"><ce:label>2</ce:label><ce:text>To whom reprint requests should be addressed.</ce:text></ce:correspondence><ce:footnote id="FN1"><ce:label>1</ce:label><ce:note-para>Present address: Institute of Microbiology, Academia Sinica, Bejing, China.</ce:note-para></ce:footnote></ce:author-group><ce:date-received day="20" month="1" year="1987"></ce:date-received><ce:date-accepted day="7" month="7" year="1987"></ce:date-accepted><ce:abstract><ce:section-title>Abstract</ce:section-title><ce:abstract-sec><ce:simple-para>The genomic RNA sequence of the cowpea strain of southern bean mosaic virus (SBMV-C) has been determined. The genome is 4194 nucleotides in length and has four open reading frames. A 5′ proximal open frame, from base 49 to base 603, corresponds to the length of the P4 proteins translated in cell-free extracts from full-length and smaller virion RNA. The largest open frame extends from base 570 to base 3437 and encodes the two largest proteins translated in cell-free extracts from full-length virion RNA. Segments of this open reading frame's predicted amino acid sequence resemble those of known viral RNA polymerases, ATP-binding proteins, and viral genome-linked proteins. A third open frame extends from base 1895 to base 2380 and has not been correlated with an <ce:italic>in vitro</ce:italic> translation product. The fourth open reading frame is located in the 3′ terminal region of the genome extending from base 3217 to base 4053. This frame encodes the SBMV capsid protein which is translated from subgenomic, virion RNA.</ce:simple-para></ce:abstract-sec></ce:abstract></head></converted-article></istex:document></istex:metadataXml><mods version="3.6"><titleInfo><title>Sequence and organization of southern bean mosaic virus genomic RNA</title></titleInfo><titleInfo type="alternative" contentType="CDATA"><title>Sequence and organization of southern bean mosaic virus genomic RNA</title></titleInfo><name type="personal"><namePart type="given">Shixuan</namePart><namePart type="family">Wu</namePart><affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</affiliation><description>Present address: Institute of Microbiology, Academia Sinica, Bejing, China.</description><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Claire A.</namePart><namePart type="family">Rinehart</namePart><affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Paul</namePart><namePart type="family">Kaesberg</namePart><affiliation>Biophysics Laboratory and Biochemistry Department, University of Wisconsin, Madison, Wisconsin 53706, USA</affiliation><description>To whom reprint requests should be addressed.</description><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="research-article" displayLabel="Full-length article"></genre><originInfo><publisher>ELSEVIER</publisher><dateIssued encoding="w3cdtf">1987</dateIssued><dateValid encoding="w3cdtf">1987-07-07</dateValid><copyrightDate encoding="w3cdtf">1987</copyrightDate></originInfo><language><languageTerm type="code" authority="iso639-2b">eng</languageTerm><languageTerm type="code" authority="rfc3066">en</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract lang="en">The genomic RNA sequence of the cowpea strain of southern bean mosaic virus (SBMV-C) has been determined. The genome is 4194 nucleotides in length and has four open reading frames. A 5′ proximal open frame, from base 49 to base 603, corresponds to the length of the P4 proteins translated in cell-free extracts from full-length and smaller virion RNA. The largest open frame extends from base 570 to base 3437 and encodes the two largest proteins translated in cell-free extracts from full-length virion RNA. Segments of this open reading frame's predicted amino acid sequence resemble those of known viral RNA polymerases, ATP-binding proteins, and viral genome-linked proteins. A third open frame extends from base 1895 to base 2380 and has not been correlated with an in vitro translation product. The fourth open reading frame is located in the 3′ terminal region of the genome extending from base 3217 to base 4053. This frame encodes the SBMV capsid protein which is translated from subgenomic, virion RNA.</abstract><relatedItem type="host"><titleInfo><title>Virology</title></titleInfo><titleInfo type="abbreviated"><title>YVIRO</title></titleInfo><genre type="Journal">journal</genre><originInfo><dateIssued encoding="w3cdtf">198711</dateIssued></originInfo><identifier type="ISSN">0042-6822</identifier><identifier type="PII">S0042-6822(00)X0265-6</identifier><part><date>198711</date><detail type="volume"><number>161</number><caption>vol.</caption></detail><detail type="issue"><number>1</number><caption>no.</caption></detail><extent unit="issue pages"><start>1</start><end>268</end></extent><extent unit="pages"><start>73</start><end>80</end></extent></part></relatedItem><identifier type="istex">908DF6B6B1663C9A939BB6DCE72317B779599DA8</identifier><identifier type="DOI">10.1016/0042-6822(87)90172-3</identifier><identifier type="PII">0042-6822(87)90172-3</identifier><recordInfo><recordContentSource>ELSEVIER</recordContentSource></recordInfo></mods></metadata><enrichments><istex:catWosTEI uri="https://api.istex.fr/document/908DF6B6B1663C9A939BB6DCE72317B779599DA8/enrichments/catWos"><teiHeader><profileDesc><textClass><classCode scheme="WOS">VIROLOGY</classCode></textClass></profileDesc></teiHeader></istex:catWosTEI></enrichments></istex></record>Pour manipuler ce document sous Unix (Dilib)
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