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Molecular modeling of nucleic acid structure

Identifieur interne : 002657 ( Pmc/Checkpoint ); précédent : 002656; suivant : 002658

Molecular modeling of nucleic acid structure

Auteurs : Rodrigo Galindo-Murillo [États-Unis] ; Christina Bergonzo [États-Unis] ; Thomas E. Cheatham [États-Unis]

Source :

Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.] [ 1934-9270 ] ; 2001.

RBID : PMC:4029499

Abstract

This unit is the first in a series of four units covering the analysis of nucleic acid structure by molecular modeling. This unit provides an overview of computer simulation of nucleic acids. Topics include the static structure model, computational graphics and energy models, generation of an initial model, and characterization of the overall three-dimensional structure.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4029499

DOI: 10.1002/0471142700.nc0705s06
PubMed: 18428873
PubMed Central: 4029499

Affiliations:

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PMC:4029499

Le document en format XML

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<author><name sortKey="Galindo Murillo, Rodrigo" sort="Galindo Murillo, Rodrigo" uniqKey="Galindo Murillo R" first="Rodrigo" last="Galindo-Murillo">Rodrigo Galindo-Murillo</name>
<affiliation wicri:level="2"><nlm:aff id="A1">Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112</wicri:regionArea>
<placeName><region type="state">Utah</region>
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<author><name sortKey="Bergonzo, Christina" sort="Bergonzo, Christina" uniqKey="Bergonzo C" first="Christina" last="Bergonzo">Christina Bergonzo</name>
<affiliation wicri:level="2"><nlm:aff id="A1">Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112, USA</nlm:aff>
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<wicri:regionArea>Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112</wicri:regionArea>
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<author><name sortKey="Cheatham, Thomas E" sort="Cheatham, Thomas E" uniqKey="Cheatham T" first="Thomas E." last="Cheatham">Thomas E. Cheatham</name>
<affiliation wicri:level="2"><nlm:aff id="A1">Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112</wicri:regionArea>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Molecular modeling of nucleic acid structure</title>
<author><name sortKey="Galindo Murillo, Rodrigo" sort="Galindo Murillo, Rodrigo" uniqKey="Galindo Murillo R" first="Rodrigo" last="Galindo-Murillo">Rodrigo Galindo-Murillo</name>
<affiliation wicri:level="2"><nlm:aff id="A1">Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112, USA</nlm:aff>
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<wicri:regionArea>Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112</wicri:regionArea>
<placeName><region type="state">Utah</region>
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<author><name sortKey="Bergonzo, Christina" sort="Bergonzo, Christina" uniqKey="Bergonzo C" first="Christina" last="Bergonzo">Christina Bergonzo</name>
<affiliation wicri:level="2"><nlm:aff id="A1">Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112</wicri:regionArea>
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<author><name sortKey="Cheatham, Thomas E" sort="Cheatham, Thomas E" uniqKey="Cheatham T" first="Thomas E." last="Cheatham">Thomas E. Cheatham</name>
<affiliation wicri:level="2"><nlm:aff id="A1">Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112</wicri:regionArea>
<placeName><region type="state">Utah</region>
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<series><title level="j">Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.]</title>
<idno type="ISSN">1934-9270</idno>
<idno type="eISSN">1934-9289</idno>
<imprint><date when="2001">2001</date>
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<front><div type="abstract" xml:lang="en"><p id="P1">This unit is the first in a series of four units covering the analysis of nucleic acid structure by molecular modeling. This unit provides an overview of computer simulation of nucleic acids. Topics include the static structure model, computational graphics and energy models, generation of an initial model, and characterization of the overall three-dimensional structure.</p>
</div>
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<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
  <pmc-dir>properties manuscript</pmc-dir>
  <front><journal-meta><journal-id journal-id-type="nlm-journal-id">101287865</journal-id>
<journal-id journal-id-type="pubmed-jr-id">34241</journal-id>
<journal-id journal-id-type="nlm-ta">Curr Protoc Nucleic Acid Chem</journal-id>
<journal-id journal-id-type="iso-abbrev">Curr Protoc Nucleic Acid Chem</journal-id>
<journal-title-group><journal-title>Current protocols in nucleic acid chemistry / edited by Serge L. Beaucage ... [et al.]</journal-title>
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<issn pub-type="ppub">1934-9270</issn>
<issn pub-type="epub">1934-9289</issn>
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<article-meta><article-id pub-id-type="pmid">18428873</article-id>
<article-id pub-id-type="pmc">4029499</article-id>
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<article-id pub-id-type="manuscript">NIHMS531602</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
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<title-group><article-title>Molecular modeling of nucleic acid structure</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Galindo-Murillo</surname>
<given-names>Rodrigo</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
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<contrib contrib-type="author"><name><surname>Bergonzo</surname>
<given-names>Christina</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author" corresp="yes"><name><surname>Cheatham</surname>
<given-names>Thomas E.</given-names>
<suffix>III</suffix>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<email>tec3@utah.edu</email>
</contrib>
</contrib-group>
<aff id="A1"><label>1</label>
Department of Medicinal Chemistry, College of Pharmacy, University of Utah, 2000 East 30 South Skaggs 201, Salt Lake City, UT 84112, USA</aff>
<pub-date pub-type="nihms-submitted"><day>10</day>
<month>12</month>
<year>2013</year>
</pub-date>
<pub-date pub-type="ppub"><month>11</month>
<year>2001</year>
</pub-date>
<pub-date pub-type="pmc-release"><day>21</day>
<month>5</month>
<year>2014</year>
</pub-date>
<volume>0 7</volume>
<fpage>Unit</fpage>
<lpage>7.5</lpage>
<pmc-comment>elocation-id from pubmed: 10.1002/0471142700.nc0705s06</pmc-comment>
      <abstract><p id="P1">This unit is the first in a series of four units covering the analysis of nucleic acid structure by molecular modeling. This unit provides an overview of computer simulation of nucleic acids. Topics include the static structure model, computational graphics and energy models, generation of an initial model, and characterization of the overall three-dimensional structure.</p>
</abstract>
<kwd-group><title>Subject Group</title>
<kwd>Nucleic Acid Chemistry</kwd>
<kwd>Nucleic Acid Structure and Folding</kwd>
<kwd>Structural Analysis of Biomolecules</kwd>
<kwd>Experimental Determination of Structure</kwd>
<kwd>Folding and Conformational Change</kwd>
</kwd-group>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>États-Unis</li>
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<region><li>Utah</li>
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<name sortKey="Bergonzo, Christina" sort="Bergonzo, Christina" uniqKey="Bergonzo C" first="Christina" last="Bergonzo">Christina Bergonzo</name>
<name sortKey="Cheatham, Thomas E" sort="Cheatham, Thomas E" uniqKey="Cheatham T" first="Thomas E." last="Cheatham">Thomas E. Cheatham</name>
</country>
</tree>
</affiliations>
</record>

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Molecular modeling of nucleic acid structure

Molecular modeling of nucleic acid structure

Source :

Abstract

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