A method for generating large datasets of organ geometries for radiotherapy treatment planning studies
Identifieur interne : 001490 ( Main/Merge ); précédent : 001489; suivant : 001491A method for generating large datasets of organ geometries for radiotherapy treatment planning studies
Auteurs : Nan Hu [République populaire de Chine, États-Unis] ; Laura Cervi O [États-Unis] ; Paul Segars [États-Unis] ; John Lewis [États-Unis] ; Jinlu Shan [États-Unis] ; Steve Jiang [États-Unis] ; Xiaolin Zheng [République populaire de Chine] ; Ge Wang [République populaire de Chine]Source :
- Radiology and Oncology [ 1318-2099 ] ; 2014.
Abstract
With the rapidly increasing application of adaptive radiotherapy, large datasets of organ geometries based on the patient’s anatomy are desired to support clinical application or research work, such as image segmentation, re-planning, and organ deformation analysis. Sometimes only limited datasets are available in clinical practice. In this study, we propose a new method to generate large datasets of organ geometries to be utilized in adaptive radiotherapy.
Given a training dataset of organ shapes derived from daily cone-beam CT, we align them into a common coordinate frame and select one of the training surfaces as reference surface. A statistical shape model of organs was constructed, based on the establishment of point correspondence between surfaces and non-uniform rational B-spline (NURBS) representation. A principal component analysis is performed on the sampled surface points to capture the major variation modes of each organ.
A set of principal components and their respective coefficients, which represent organ surface deformation, were obtained, and a statistical analysis of the coefficients was performed. New sets of statistically equivalent coefficients can be constructed and assigned to the principal components, resulting in a larger geometry dataset for the patient’s organs.
These generated organ geometries are realistic and statistically representative.
Url:
DOI: 10.2478/raon-2014-0003
PubMed: 25435856
PubMed Central: 4230563
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A method for generating large datasets of organ geometries for radiotherapy treatment planning studies</title><author><name sortKey="Hu, Nan" sort="Hu, Nan" uniqKey="Hu N" first="Nan" last="Hu">Nan Hu</name><affiliation wicri:level="1"><nlm:aff id="af1-rado-48-04-408"> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University</wicri:regionArea><wicri:noRegion>Third Military Medical University</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="af3-rado-48-04-408"> College of Bioengineering, Chongqing University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> College of Bioengineering, Chongqing University</wicri:regionArea><wicri:noRegion>Chongqing University</wicri:noRegion></affiliation></author><author><name sortKey="Cervi O, Laura" sort="Cervi O, Laura" uniqKey="Cervi O L" first="Laura" last="Cervi O">Laura Cervi O</name><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Segars, Paul" sort="Segars, Paul" uniqKey="Segars P" first="Paul" last="Segars">Paul Segars</name><affiliation wicri:level="1"><nlm:aff id="af4-rado-48-04-408"> Department of Radiology, Duke University, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiology, Duke University</wicri:regionArea><wicri:noRegion>Duke University</wicri:noRegion></affiliation></author><author><name sortKey="Lewis, John" sort="Lewis, John" uniqKey="Lewis J" first="John" last="Lewis">John Lewis</name><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Shan, Jinlu" sort="Shan, Jinlu" uniqKey="Shan J" first="Jinlu" last="Shan">Jinlu Shan</name><affiliation wicri:level="1"><nlm:aff id="af4-rado-48-04-408"> Department of Radiology, Duke University, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiology, Duke University</wicri:regionArea><wicri:noRegion>Duke University</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Steve" sort="Jiang, Steve" uniqKey="Jiang S" first="Steve" last="Jiang">Steve Jiang</name><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Zheng, Xiaolin" sort="Zheng, Xiaolin" uniqKey="Zheng X" first="Xiaolin" last="Zheng">Xiaolin Zheng</name><affiliation wicri:level="1"><nlm:aff id="af3-rado-48-04-408"> College of Bioengineering, Chongqing University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> College of Bioengineering, Chongqing University</wicri:regionArea><wicri:noRegion>Chongqing University</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Ge" sort="Wang, Ge" uniqKey="Wang G" first="Ge" last="Wang">Ge Wang</name><affiliation wicri:level="1"><nlm:aff id="af1-rado-48-04-408"> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University</wicri:regionArea><wicri:noRegion>Third Military Medical University</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">25435856</idno><idno type="pmc">4230563</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4230563</idno><idno type="RBID">PMC:4230563</idno><idno type="doi">10.2478/raon-2014-0003</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">002457</idno><idno type="wicri:Area/Pmc/Curation">002457</idno><idno type="wicri:Area/Pmc/Checkpoint">000E54</idno><idno type="wicri:Area/Ncbi/Merge">003479</idno><idno type="wicri:Area/Ncbi/Curation">003479</idno><idno type="wicri:Area/Ncbi/Checkpoint">003479</idno><idno type="wicri:doubleKey">1318-2099:2014:Hu N:a:method:for</idno><idno type="wicri:Area/Main/Merge">001490</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A method for generating large datasets of organ geometries for radiotherapy treatment planning studies</title><author><name sortKey="Hu, Nan" sort="Hu, Nan" uniqKey="Hu N" first="Nan" last="Hu">Nan Hu</name><affiliation wicri:level="1"><nlm:aff id="af1-rado-48-04-408"> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University</wicri:regionArea><wicri:noRegion>Third Military Medical University</wicri:noRegion></affiliation><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation><affiliation wicri:level="1"><nlm:aff id="af3-rado-48-04-408"> College of Bioengineering, Chongqing University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> College of Bioengineering, Chongqing University</wicri:regionArea><wicri:noRegion>Chongqing University</wicri:noRegion></affiliation></author><author><name sortKey="Cervi O, Laura" sort="Cervi O, Laura" uniqKey="Cervi O L" first="Laura" last="Cervi O">Laura Cervi O</name><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Segars, Paul" sort="Segars, Paul" uniqKey="Segars P" first="Paul" last="Segars">Paul Segars</name><affiliation wicri:level="1"><nlm:aff id="af4-rado-48-04-408"> Department of Radiology, Duke University, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiology, Duke University</wicri:regionArea><wicri:noRegion>Duke University</wicri:noRegion></affiliation></author><author><name sortKey="Lewis, John" sort="Lewis, John" uniqKey="Lewis J" first="John" last="Lewis">John Lewis</name><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Shan, Jinlu" sort="Shan, Jinlu" uniqKey="Shan J" first="Jinlu" last="Shan">Jinlu Shan</name><affiliation wicri:level="1"><nlm:aff id="af4-rado-48-04-408"> Department of Radiology, Duke University, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiology, Duke University</wicri:regionArea><wicri:noRegion>Duke University</wicri:noRegion></affiliation></author><author><name sortKey="Jiang, Steve" sort="Jiang, Steve" uniqKey="Jiang S" first="Steve" last="Jiang">Steve Jiang</name><affiliation wicri:level="3"><nlm:aff id="af2-rado-48-04-408"> Department of Radiation Oncology, University of California, San Diego, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea> Department of Radiation Oncology, University of California, San Diego</wicri:regionArea><placeName><settlement type="city">San Diego</settlement><region type="state">Californie</region></placeName></affiliation></author><author><name sortKey="Zheng, Xiaolin" sort="Zheng, Xiaolin" uniqKey="Zheng X" first="Xiaolin" last="Zheng">Xiaolin Zheng</name><affiliation wicri:level="1"><nlm:aff id="af3-rado-48-04-408"> College of Bioengineering, Chongqing University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> College of Bioengineering, Chongqing University</wicri:regionArea><wicri:noRegion>Chongqing University</wicri:noRegion></affiliation></author><author><name sortKey="Wang, Ge" sort="Wang, Ge" uniqKey="Wang G" first="Ge" last="Wang">Ge Wang</name><affiliation wicri:level="1"><nlm:aff id="af1-rado-48-04-408"> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University, China</nlm:aff><country xml:lang="fr">République populaire de Chine</country><wicri:regionArea> Department of Radiation Oncology, Cancer Center,Research Institute of Surgery, Daping Hospital, Third Military Medical University</wicri:regionArea><wicri:noRegion>Third Military Medical University</wicri:noRegion></affiliation></author></analytic><series><title level="j">Radiology and Oncology</title><idno type="ISSN">1318-2099</idno><idno type="eISSN">1581-3207</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>With the rapidly increasing application of adaptive radiotherapy, large datasets of organ geometries based on the patient’s anatomy are desired to support clinical application or research work, such as image segmentation, re-planning, and organ deformation analysis. Sometimes only limited datasets are available in clinical practice. In this study, we propose a new method to generate large datasets of organ geometries to be utilized in adaptive radiotherapy.</p></sec><sec><title>Methods</title><p>Given a training dataset of organ shapes derived from daily cone-beam CT, we align them into a common coordinate frame and select one of the training surfaces as reference surface. A statistical shape model of organs was constructed, based on the establishment of point correspondence between surfaces and non-uniform rational B-spline (NURBS) representation. A principal component analysis is performed on the sampled surface points to capture the major variation modes of each organ.</p></sec><sec><title>Results</title><p>A set of principal components and their respective coefficients, which represent organ surface deformation, were obtained, and a statistical analysis of the coefficients was performed. New sets of statistically equivalent coefficients can be constructed and assigned to the principal components, resulting in a larger geometry dataset for the patient’s organs.</p></sec><sec><title>Conclusions</title><p>These generated organ geometries are realistic and statistically representative.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Olivera, Gh" uniqKey="Olivera G">GH Olivera</name></author><author><name sortKey="Ruchala, K" uniqKey="Ruchala K">K Ruchala</name></author><author><name sortKey="Lu, W" uniqKey="Lu W">W Lu</name></author><author><name sortKey="Kapatoes, J" uniqKey="Kapatoes J">J Kapatoes</name></author><author><name sortKey="Reckwerdt, P" uniqKey="Reckwerdt P">P Reckwerdt</name></author><author><name sortKey="Jeraj, R" uniqKey="Jeraj R">R Jeraj</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Rietzel, E" uniqKey="Rietzel E">E Rietzel</name></author><author><name 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uniqKey="Srinivasan M">MA Srinivasan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lorenz, C" uniqKey="Lorenz C">C Lorenz</name></author><author><name sortKey="Krahnstover, N" uniqKey="Krahnstover N">N Krahnstover</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Xie, H" uniqKey="Xie H">H Xie</name></author><author><name sortKey="Qin, H" uniqKey="Qin H">H Qin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fletcher, P" uniqKey="Fletcher P">P Fletcher</name></author><author><name sortKey="Lu, C" uniqKey="Lu C">C Lu</name></author><author><name sortKey="Pizer, S" uniqKey="Pizer S">S Pizer</name></author><author><name sortKey="Joshi, S" uniqKey="Joshi S">S Joshi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Uzumcu, M" uniqKey="Uzumcu M">M Üzümcü</name></author><author><name sortKey="Frangi, Af" uniqKey="Frangi A">AF Frangi</name></author><author><name sortKey="Sonka, M" uniqKey="Sonka M">M Sonka</name></author><author><name sortKey="Reiber" uniqKey="Reiber">Reiber</name></author><author><name sortKey="Lelieveldt" uniqKey="Lelieveldt">Lelieveldt</name></author></analytic></biblStruct></listBibl></div1></back></TEI></record>Pour manipuler ce document sous Unix (Dilib)
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