CyberinfraV1, PubMed, Curation, bibRecord, 000009

A data management and publication workflow for a large-scale, heterogeneous sensor network.

Identifieur interne : 000009 ( PubMed/Curation ); précédent : 000008; suivant : 000010

A data management and publication workflow for a large-scale, heterogeneous sensor network.

Auteurs : Amber Spackman Jones [États-Unis] ; Jeffery S. Horsburgh ; Stephanie L. Reeder ; Maurier Ramírez ; Juan Caraballo

Source :

Environmental monitoring and assessment [ 1573-2959 ] ; 2015.

RBID : pubmed:25968554

English descriptors

KwdEn :
- Environmental Monitoring (instrumentation), Information Storage and Retrieval, Publications, Software, Water Pollution (analysis), Water Pollution (statistics & numerical data), Workflow.
MESH :
- analysis : Water Pollution.
- instrumentation : Environmental Monitoring.
- statistics & numerical data : Water Pollution.
- Information Storage and Retrieval, Publications, Software, Workflow.

Abstract

It is common for hydrology researchers to collect data using in situ sensors at high frequencies, for extended durations, and with spatial distributions that produce data volumes requiring infrastructure for data storage, management, and sharing. The availability and utility of these data in addressing scientific questions related to water availability, water quality, and natural disasters relies on effective cyberinfrastructure that facilitates transformation of raw sensor data into usable data products. It also depends on the ability of researchers to share and access the data in useable formats. In this paper, we describe a data management and publication workflow and software tools for research groups and sites conducting long-term monitoring using in situ sensors. Functionality includes the ability to track monitoring equipment inventory and events related to field maintenance. Linking this information to the observational data is imperative in ensuring the quality of sensor-based data products. We present these tools in the context of a case study for the innovative Urban Transitions and Aridregion Hydrosustainability (iUTAH) sensor network. The iUTAH monitoring network includes sensors at aquatic and terrestrial sites for continuous monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. We present the overall workflow we have developed for effectively transferring data from field monitoring sites to ultimate end-users and describe the software tools we have deployed for storing, managing, and sharing the sensor data. These tools are all open source and available for others to use.

DOI: 10.1007/s10661-015-4594-3
PubMed: 25968554

Links toward previous steps (curation, corpus...)

to stream PubMed, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000009

Links to Exploration step

pubmed:25968554

Le document en format XML

<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">A data management and publication workflow for a large-scale, heterogeneous sensor network.</title>
<author><name sortKey="Jones, Amber Spackman" sort="Jones, Amber Spackman" uniqKey="Jones A" first="Amber Spackman" last="Jones">Amber Spackman Jones</name>
<affiliation wicri:level="1"><nlm:affiliation>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA, amber.jones@usu.edu.</nlm:affiliation>
<country wicri:rule="url">États-Unis</country>
<wicri:regionArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Horsburgh, Jeffery S" sort="Horsburgh, Jeffery S" uniqKey="Horsburgh J" first="Jeffery S" last="Horsburgh">Jeffery S. Horsburgh</name>
</author>
<author><name sortKey="Reeder, Stephanie L" sort="Reeder, Stephanie L" uniqKey="Reeder S" first="Stephanie L" last="Reeder">Stephanie L. Reeder</name>
</author>
<author><name sortKey="Ramirez, Maurier" sort="Ramirez, Maurier" uniqKey="Ramirez M" first="Maurier" last="Ramírez">Maurier Ramírez</name>
</author>
<author><name sortKey="Caraballo, Juan" sort="Caraballo, Juan" uniqKey="Caraballo J" first="Juan" last="Caraballo">Juan Caraballo</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2015">2015</date>
<idno type="doi">10.1007/s10661-015-4594-3</idno>
<idno type="RBID">pubmed:25968554</idno>
<idno type="pmid">25968554</idno>
<idno type="wicri:Area/PubMed/Corpus">000009</idno>
<idno type="wicri:Area/PubMed/Curation">000009</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">A data management and publication workflow for a large-scale, heterogeneous sensor network.</title>
<author><name sortKey="Jones, Amber Spackman" sort="Jones, Amber Spackman" uniqKey="Jones A" first="Amber Spackman" last="Jones">Amber Spackman Jones</name>
<affiliation wicri:level="1"><nlm:affiliation>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA, amber.jones@usu.edu.</nlm:affiliation>
<country wicri:rule="url">États-Unis</country>
<wicri:regionArea>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA</wicri:regionArea>
</affiliation>
</author>
<author><name sortKey="Horsburgh, Jeffery S" sort="Horsburgh, Jeffery S" uniqKey="Horsburgh J" first="Jeffery S" last="Horsburgh">Jeffery S. Horsburgh</name>
</author>
<author><name sortKey="Reeder, Stephanie L" sort="Reeder, Stephanie L" uniqKey="Reeder S" first="Stephanie L" last="Reeder">Stephanie L. Reeder</name>
</author>
<author><name sortKey="Ramirez, Maurier" sort="Ramirez, Maurier" uniqKey="Ramirez M" first="Maurier" last="Ramírez">Maurier Ramírez</name>
</author>
<author><name sortKey="Caraballo, Juan" sort="Caraballo, Juan" uniqKey="Caraballo J" first="Juan" last="Caraballo">Juan Caraballo</name>
</author>
</analytic>
<series><title level="j">Environmental monitoring and assessment</title>
<idno type="eISSN">1573-2959</idno>
<imprint><date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Environmental Monitoring (instrumentation)</term>
<term>Information Storage and Retrieval</term>
<term>Publications</term>
<term>Software</term>
<term>Water Pollution (analysis)</term>
<term>Water Pollution (statistics & numerical data)</term>
<term>Workflow</term>
</keywords>
<keywords scheme="MESH" qualifier="analysis" xml:lang="en"><term>Water Pollution</term>
</keywords>
<keywords scheme="MESH" qualifier="instrumentation" xml:lang="en"><term>Environmental Monitoring</term>
</keywords>
<keywords scheme="MESH" qualifier="statistics & numerical data" xml:lang="en"><term>Water Pollution</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Information Storage and Retrieval</term>
<term>Publications</term>
<term>Software</term>
<term>Workflow</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">It is common for hydrology researchers to collect data using in situ sensors at high frequencies, for extended durations, and with spatial distributions that produce data volumes requiring infrastructure for data storage, management, and sharing. The availability and utility of these data in addressing scientific questions related to water availability, water quality, and natural disasters relies on effective cyberinfrastructure that facilitates transformation of raw sensor data into usable data products. It also depends on the ability of researchers to share and access the data in useable formats. In this paper, we describe a data management and publication workflow and software tools for research groups and sites conducting long-term monitoring using in situ sensors. Functionality includes the ability to track monitoring equipment inventory and events related to field maintenance. Linking this information to the observational data is imperative in ensuring the quality of sensor-based data products. We present these tools in the context of a case study for the innovative Urban Transitions and Aridregion Hydrosustainability (iUTAH) sensor network. The iUTAH monitoring network includes sensors at aquatic and terrestrial sites for continuous monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. We present the overall workflow we have developed for effectively transferring data from field monitoring sites to ultimate end-users and describe the software tools we have deployed for storing, managing, and sharing the sensor data. These tools are all open source and available for others to use.</div>
</front>
</TEI>
<pubmed><MedlineCitation Owner="NLM" Status="MEDLINE"><PMID Version="1">25968554</PMID>
<DateCreated><Year>2015</Year>
<Month>05</Month>
<Day>13</Day>
</DateCreated>
<DateCompleted><Year>2015</Year>
<Month>11</Month>
<Day>13</Day>
</DateCompleted>
<DateRevised><Year>2015</Year>
<Month>05</Month>
<Day>19</Day>
</DateRevised>
<Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1573-2959</ISSN>
<JournalIssue CitedMedium="Internet"><Volume>187</Volume>
<Issue>6</Issue>
<PubDate><Year>2015</Year>
<Month>Jun</Month>
</PubDate>
</JournalIssue>
<Title>Environmental monitoring and assessment</Title>
<ISOAbbreviation>Environ Monit Assess</ISOAbbreviation>
</Journal>
<ArticleTitle>A data management and publication workflow for a large-scale, heterogeneous sensor network.</ArticleTitle>
<Pagination><MedlinePgn>348</MedlinePgn>
</Pagination>
<ELocationID EIdType="doi" ValidYN="Y">10.1007/s10661-015-4594-3</ELocationID>
<Abstract><AbstractText>It is common for hydrology researchers to collect data using in situ sensors at high frequencies, for extended durations, and with spatial distributions that produce data volumes requiring infrastructure for data storage, management, and sharing. The availability and utility of these data in addressing scientific questions related to water availability, water quality, and natural disasters relies on effective cyberinfrastructure that facilitates transformation of raw sensor data into usable data products. It also depends on the ability of researchers to share and access the data in useable formats. In this paper, we describe a data management and publication workflow and software tools for research groups and sites conducting long-term monitoring using in situ sensors. Functionality includes the ability to track monitoring equipment inventory and events related to field maintenance. Linking this information to the observational data is imperative in ensuring the quality of sensor-based data products. We present these tools in the context of a case study for the innovative Urban Transitions and Aridregion Hydrosustainability (iUTAH) sensor network. The iUTAH monitoring network includes sensors at aquatic and terrestrial sites for continuous monitoring of common meteorological variables, snow accumulation and melt, soil moisture, surface water flow, and surface water quality. We present the overall workflow we have developed for effectively transferring data from field monitoring sites to ultimate end-users and describe the software tools we have deployed for storing, managing, and sharing the sensor data. These tools are all open source and available for others to use.</AbstractText>
</Abstract>
<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Jones</LastName>
<ForeName>Amber Spackman</ForeName>
<Initials>AS</Initials>
<AffiliationInfo><Affiliation>Utah Water Research Laboratory, Utah State University, 8200 Old Main Hill, Logan, UT, 84322-8200, USA, amber.jones@usu.edu.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y"><LastName>Horsburgh</LastName>
<ForeName>Jeffery S</ForeName>
<Initials>JS</Initials>
</Author>
<Author ValidYN="Y"><LastName>Reeder</LastName>
<ForeName>Stephanie L</ForeName>
<Initials>SL</Initials>
</Author>
<Author ValidYN="Y"><LastName>Ramírez</LastName>
<ForeName>Maurier</ForeName>
<Initials>M</Initials>
</Author>
<Author ValidYN="Y"><LastName>Caraballo</LastName>
<ForeName>Juan</ForeName>
<Initials>J</Initials>
</Author>
</AuthorList>
<Language>eng</Language>
<PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType>
<PublicationType UI="D013486">Research Support, U.S. Gov't, Non-P.H.S.</PublicationType>
</PublicationTypeList>
<ArticleDate DateType="Electronic"><Year>2015</Year>
<Month>05</Month>
<Day>13</Day>
</ArticleDate>
</Article>
<MedlineJournalInfo><Country>Netherlands</Country>
<MedlineTA>Environ Monit Assess</MedlineTA>
<NlmUniqueID>8508350</NlmUniqueID>
<ISSNLinking>0167-6369</ISSNLinking>
</MedlineJournalInfo>
<CitationSubset>IM</CitationSubset>
<CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Environ Sci Technol. 2006 Apr 15;40(8):2692-8</RefSource>
<PMID Version="1">16683610</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Trends Ecol Evol. 2012 Feb;27(2):121-9</RefSource>
<PMID Version="1">22206661</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>Environ Monit Assess. 2009 Mar;150(1-4):323-31</RefSource>
<PMID Version="1">18418722</PMID>
</CommentsCorrections>
<CommentsCorrections RefType="Cites"><RefSource>New Phytol. 2009;182(3):589-607</RefSource>
<PMID Version="1">19422546</PMID>
</CommentsCorrections>
</CommentsCorrectionsList>
<MeshHeadingList><MeshHeading><DescriptorName MajorTopicYN="N" UI="D004784">Environmental Monitoring</DescriptorName>
<QualifierName MajorTopicYN="Y" UI="Q000295">instrumentation</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="Y" UI="D016247">Information Storage and Retrieval</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="N" UI="D011642">Publications</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="N" UI="D012984">Software</DescriptorName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="N" UI="D014876">Water Pollution</DescriptorName>
<QualifierName MajorTopicYN="Y" UI="Q000032">analysis</QualifierName>
<QualifierName MajorTopicYN="N" UI="Q000706">statistics & numerical data</QualifierName>
</MeshHeading>
<MeshHeading><DescriptorName MajorTopicYN="N" UI="D057188">Workflow</DescriptorName>
</MeshHeading>
</MeshHeadingList>
<OtherID Source="NLM">PMC4429147</OtherID>
</MedlineCitation>
<PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year>
<Month>1</Month>
<Day>21</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="accepted"><Year>2015</Year>
<Month>5</Month>
<Day>5</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="aheadofprint"><Year>2015</Year>
<Month>5</Month>
<Day>13</Day>
</PubMedPubDate>
<PubMedPubDate PubStatus="entrez"><Year>2015</Year>
<Month>5</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="pubmed"><Year>2015</Year>
<Month>5</Month>
<Day>15</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
<PubMedPubDate PubStatus="medline"><Year>2015</Year>
<Month>11</Month>
<Day>14</Day>
<Hour>6</Hour>
<Minute>0</Minute>
</PubMedPubDate>
</History>
<PublicationStatus>ppublish</PublicationStatus>
<ArticleIdList><ArticleId IdType="doi">10.1007/s10661-015-4594-3</ArticleId>
<ArticleId IdType="pubmed">25968554</ArticleId>
<ArticleId IdType="pmc">PMC4429147</ArticleId>
</ArticleIdList>
</PubmedData>
</pubmed>
</record>

Pour manipuler ce document sous Unix (Dilib)

EXPLOR_STEP=$WICRI_ROOT/Ticri/CIDE/explor/CyberinfraV1/Data/PubMed/Curation

HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000009 | SxmlIndent | more

HfdSelect -h $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd -nk 000009 | SxmlIndent | more

Pour mettre un lien sur cette page dans le réseau Wicri

{{Explor lien
   |wiki=    Ticri/CIDE
   |area=    CyberinfraV1
   |flux=    PubMed
   |étape=   Curation
   |type=    RBID
   |clé=     pubmed:25968554
   |texte=   A data management and publication workflow for a large-scale, heterogeneous sensor network.
}}

Pour générer des pages wiki

HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Curation/RBID.i   -Sk "pubmed:25968554" \
       | HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Curation/biblio.hfd   \
       | NlmPubMed2Wicri -a CyberinfraV1

This area was generated with Dilib version V0.6.25.
Data generation: Thu Oct 27 09:30:58 2016. Site generation: Sun Mar 10 23:08:40 2024

	Serveur d'exploration Cyberinfrastructure
	Attention, ce site est en cours de développement ! Attention, site généré par des moyens informatiques à partir de corpus bruts. Les informations ne sont donc pas validées.

Serveur d'exploration Cyberinfrastructure

A data management and publication workflow for a large-scale, heterogeneous sensor network.

A data management and publication workflow for a large-scale, heterogeneous sensor network.

Source :

English descriptors

Abstract

Links toward previous steps (curation, corpus...)

Links to Exploration step

Le document en format XML

Pour manipuler ce document sous Unix (Dilib)

Pour mettre un lien sur cette page dans le réseau Wicri

Pour générer des pages wiki