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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">AphidBase: A centralized bioinformatic resource for annotation of the pea aphid genome</title><author><name sortKey="Legeai, Fabrice" sort="Legeai, Fabrice" uniqKey="Legeai F" first="Fabrice" last="Legeai">Fabrice Legeai</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation><affiliation><nlm:aff id="A2">INRIA Centre Rennes – Bretagne Atlantique, GenOuest, Campus de Beaulieu, 35042 Rennes, France</nlm:aff></affiliation></author><author><name sortKey="Shigenobu, Shuji" sort="Shigenobu, Shuji" uniqKey="Shigenobu S" first="Shuji" last="Shigenobu">Shuji Shigenobu</name><affiliation><nlm:aff id="A3">Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A4">PRESTO, JST, 4-1-8 Honcho Kawaguchi, Saitama, 332-0012, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Higashiyama, Myodaiji, Okazaki 444-8787, Japan</nlm:aff></affiliation></author><author><name sortKey="Gauthier, Jean Pierre" sort="Gauthier, Jean Pierre" uniqKey="Gauthier J" first="Jean-Pierre" last="Gauthier">Jean-Pierre Gauthier</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation></author><author><name sortKey="Colbourne, John" sort="Colbourne, John" uniqKey="Colbourne J" first="John" last="Colbourne">John Colbourne</name><affiliation><nlm:aff id="A6">The Center for Genomics and Bioinformatics, School of Informatics and Department of Biology, Indiana University, IN 47405, USA</nlm:aff></affiliation></author><author><name sortKey="Rispe, Claude" sort="Rispe, Claude" uniqKey="Rispe C" first="Claude" last="Rispe">Claude Rispe</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation></author><author><name sortKey="Collin, Olivier" sort="Collin, Olivier" uniqKey="Collin O" first="Olivier" last="Collin">Olivier Collin</name><affiliation><nlm:aff id="A2">INRIA Centre Rennes – Bretagne Atlantique, GenOuest, Campus de Beaulieu, 35042 Rennes, France</nlm:aff></affiliation></author><author><name sortKey="Richards, Stephen" sort="Richards, Stephen" uniqKey="Richards S" first="Stephen" last="Richards">Stephen Richards</name><affiliation><nlm:aff id="A7">Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA</nlm:aff></affiliation></author><author><name sortKey="Wilson, Alex C C" sort="Wilson, Alex C C" uniqKey="Wilson A" first="Alex C. C." last="Wilson">Alex C. C. Wilson</name><affiliation><nlm:aff id="A8">Department of Biology, University of Miami, Coral Gables, Florida 33146, USA</nlm:aff></affiliation></author><author><name sortKey="Tagu, Denis" sort="Tagu, Denis" uniqKey="Tagu D" first="Denis" last="Tagu">Denis Tagu</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">20482635</idno><idno type="pmc">4372297</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4372297</idno><idno type="RBID">PMC:4372297</idno><idno type="doi">10.1111/j.1365-2583.2009.00930.x</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">000463</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">AphidBase: A centralized bioinformatic resource for annotation of the pea aphid genome</title><author><name sortKey="Legeai, Fabrice" sort="Legeai, Fabrice" uniqKey="Legeai F" first="Fabrice" last="Legeai">Fabrice Legeai</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation><affiliation><nlm:aff id="A2">INRIA Centre Rennes – Bretagne Atlantique, GenOuest, Campus de Beaulieu, 35042 Rennes, France</nlm:aff></affiliation></author><author><name sortKey="Shigenobu, Shuji" sort="Shigenobu, Shuji" uniqKey="Shigenobu S" first="Shuji" last="Shigenobu">Shuji Shigenobu</name><affiliation><nlm:aff id="A3">Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA</nlm:aff></affiliation><affiliation><nlm:aff id="A4">PRESTO, JST, 4-1-8 Honcho Kawaguchi, Saitama, 332-0012, Japan</nlm:aff></affiliation><affiliation><nlm:aff id="A5">Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Higashiyama, Myodaiji, Okazaki 444-8787, Japan</nlm:aff></affiliation></author><author><name sortKey="Gauthier, Jean Pierre" sort="Gauthier, Jean Pierre" uniqKey="Gauthier J" first="Jean-Pierre" last="Gauthier">Jean-Pierre Gauthier</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation></author><author><name sortKey="Colbourne, John" sort="Colbourne, John" uniqKey="Colbourne J" first="John" last="Colbourne">John Colbourne</name><affiliation><nlm:aff id="A6">The Center for Genomics and Bioinformatics, School of Informatics and Department of Biology, Indiana University, IN 47405, USA</nlm:aff></affiliation></author><author><name sortKey="Rispe, Claude" sort="Rispe, Claude" uniqKey="Rispe C" first="Claude" last="Rispe">Claude Rispe</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation></author><author><name sortKey="Collin, Olivier" sort="Collin, Olivier" uniqKey="Collin O" first="Olivier" last="Collin">Olivier Collin</name><affiliation><nlm:aff id="A2">INRIA Centre Rennes – Bretagne Atlantique, GenOuest, Campus de Beaulieu, 35042 Rennes, France</nlm:aff></affiliation></author><author><name sortKey="Richards, Stephen" sort="Richards, Stephen" uniqKey="Richards S" first="Stephen" last="Richards">Stephen Richards</name><affiliation><nlm:aff id="A7">Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA</nlm:aff></affiliation></author><author><name sortKey="Wilson, Alex C C" sort="Wilson, Alex C C" uniqKey="Wilson A" first="Alex C. C." last="Wilson">Alex C. C. Wilson</name><affiliation><nlm:aff id="A8">Department of Biology, University of Miami, Coral Gables, Florida 33146, USA</nlm:aff></affiliation></author><author><name sortKey="Tagu, Denis" sort="Tagu, Denis" uniqKey="Tagu D" first="Denis" last="Tagu">Denis Tagu</name><affiliation><nlm:aff id="A1">UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</nlm:aff></affiliation></author></analytic><series><title level="j">Insect molecular biology</title><idno type="ISSN">0962-1075</idno><idno type="eISSN">1365-2583</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p id="P1">AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System designed to organize and distribute genomic data and annotations for a large international community was constructed using open source software tools from the Generic Model Organism Database (GMOD). The system includes Apollo and GBrowse utilities as well as a wiki, blast search capabilities and a full text search engine. AphidBase strongly supported community cooperation and coordination in the curation of gene models during community annotation of the pea aphid genome. AphidBase can be accessed at <ext-link ext-link-type="uri" xlink:href="http://www.aphidbase.com">http://www.aphidbase.com</ext-link>.</p></div></front></TEI><pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">9303579</journal-id><journal-id journal-id-type="pubmed-jr-id">2608</journal-id><journal-id journal-id-type="nlm-ta">Insect Mol Biol</journal-id><journal-id journal-id-type="iso-abbrev">Insect Mol. Biol.</journal-id><journal-title-group><journal-title>Insect molecular biology</journal-title></journal-title-group><issn pub-type="ppub">0962-1075</issn><issn pub-type="epub">1365-2583</issn></journal-meta><article-meta><article-id pub-id-type="pmid">20482635</article-id><article-id pub-id-type="pmc">4372297</article-id><article-id pub-id-type="doi">10.1111/j.1365-2583.2009.00930.x</article-id><article-id pub-id-type="manuscript">NIHMS671061</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>AphidBase: A centralized bioinformatic resource for annotation of the pea aphid genome</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Legeai</surname><given-names>Fabrice</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref><xref rid="FN1" ref-type="author-notes">*</xref></contrib><contrib contrib-type="author"><name><surname>Shigenobu</surname><given-names>Shuji</given-names></name><xref ref-type="aff" rid="A3">3</xref><xref ref-type="aff" rid="A4">4</xref><xref ref-type="aff" rid="A5">5</xref></contrib><contrib contrib-type="author"><name><surname>Gauthier</surname><given-names>Jean-Pierre</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Colbourne</surname><given-names>John</given-names></name><xref ref-type="aff" rid="A6">6</xref></contrib><contrib contrib-type="author"><name><surname>Rispe</surname><given-names>Claude</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Collin</surname><given-names>Olivier</given-names></name><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Richards</surname><given-names>Stephen</given-names></name><xref ref-type="aff" rid="A7">7</xref></contrib><contrib contrib-type="author"><name><surname>Wilson</surname><given-names>Alex C. C.</given-names></name><xref ref-type="aff" rid="A8">8</xref></contrib><contrib contrib-type="author"><name><surname>Tagu</surname><given-names>Denis</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib></contrib-group><aff id="A1"><label>1</label>UMR 1099 BiO3P INRA – Agrocampus Rennes - Université Rennes 1 BP35327 35653 Le Rheu cedex, France</aff><aff id="A2"><label>2</label>INRIA Centre Rennes – Bretagne Atlantique, GenOuest, Campus de Beaulieu, 35042 Rennes, France</aff><aff id="A3"><label>3</label>Department of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ 08544, USA</aff><aff id="A4"><label>4</label>PRESTO, JST, 4-1-8 Honcho Kawaguchi, Saitama, 332-0012, Japan</aff><aff id="A5"><label>5</label>Okazaki Institute for Integrative Bioscience, National Institutes of Natural Sciences, Higashiyama, Myodaiji, Okazaki 444-8787, Japan</aff><aff id="A6"><label>6</label>The Center for Genomics and Bioinformatics, School of Informatics and Department of Biology, Indiana University, IN 47405, USA</aff><aff id="A7"><label>7</label>Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA</aff><aff id="A8"><label>8</label>Department of Biology, University of Miami, Coral Gables, Florida 33146, USA</aff><author-notes><corresp id="FN1"><label>*</label>corresponding author (<email>fabrice.legeai@rennes.inra.fr</email>)</corresp></author-notes><pub-date pub-type="nihms-submitted"><day>13</day><month>3</month><year>2015</year></pub-date><pub-date pub-type="ppub"><month>3</month><year>2010</year></pub-date><pub-date pub-type="pmc-release"><day>24</day><month>3</month><year>2015</year></pub-date><volume>19</volume><issue>0 2</issue><fpage>5</fpage><lpage>12</lpage><pmc-comment>elocation-id from pubmed: 10.1111/j.1365-2583.2009.00930.x</pmc-comment>
<abstract><p id="P1">AphidBase is a centralized bioinformatic resource that was developed to facilitate community annotation of the pea aphid genome by the International Aphid Genomics Consortium (IAGC). The AphidBase Information System designed to organize and distribute genomic data and annotations for a large international community was constructed using open source software tools from the Generic Model Organism Database (GMOD). The system includes Apollo and GBrowse utilities as well as a wiki, blast search capabilities and a full text search engine. AphidBase strongly supported community cooperation and coordination in the curation of gene models during community annotation of the pea aphid genome. AphidBase can be accessed at <ext-link ext-link-type="uri" xlink:href="http://www.aphidbase.com">http://www.aphidbase.com</ext-link>.</p></abstract></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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