pENCODE: A Plant Encyclopedia of DNA Elements
Identifieur interne : 000419 ( Pmc/Corpus ); précédent : 000418; suivant : 000420pENCODE: A Plant Encyclopedia of DNA Elements
Auteurs : Amanda K. Lane ; Chad E. Niederhuth ; Lexiang Ji ; Robert J. SchmitzSource :
- Annual review of genetics [ 0066-4197 ] ; 2014.
Abstract
ENCODE projects exist for many eukaryotes, including humans, but as of yet no defined project exists for plants. A plant ENCODE would be invaluable to the research community and could be more readily produced than its metazoan equivalents by capitalizing on the preexisting infrastructure provided from similar projects. Collecting and normalizing plant epigenomic data for a range of species will facilitate hypothesis generation, cross-species comparisons, annotation of genomes, and an understanding of epigenomic functions throughout plant evolution. Here, we discuss the need for such a project, outline the challenges it faces, and suggest ways forward to build a plant ENCODE.
Url:
DOI: 10.1146/annurev-genet-120213-092443
PubMed: 25149370
PubMed Central: 4463858
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<pmc-dir>properties manuscript</pmc-dir>
<front><journal-meta><journal-id journal-id-type="nlm-journal-id">0117605</journal-id><journal-id journal-id-type="pubmed-jr-id">668</journal-id><journal-id journal-id-type="nlm-ta">Annu Rev Genet</journal-id><journal-id journal-id-type="iso-abbrev">Annu. Rev. Genet.</journal-id><journal-title-group><journal-title>Annual review of genetics</journal-title></journal-title-group><issn pub-type="ppub">0066-4197</issn><issn pub-type="epub">1545-2948</issn></journal-meta><article-meta><article-id pub-id-type="pmid">25149370</article-id><article-id pub-id-type="pmc">4463858</article-id><article-id pub-id-type="doi">10.1146/annurev-genet-120213-092443</article-id><article-id pub-id-type="manuscript">NIHMS697261</article-id><article-categories><subj-group subj-group-type="heading"><subject>Article</subject></subj-group></article-categories><title-group><article-title>pENCODE: A Plant Encyclopedia of DNA Elements</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Lane</surname><given-names>Amanda K.</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Niederhuth</surname><given-names>Chad E.</given-names></name><xref ref-type="aff" rid="A1">1</xref></contrib><contrib contrib-type="author"><name><surname>Ji</surname><given-names>Lexiang</given-names></name><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref></contrib><contrib contrib-type="author"><name><surname>Schmitz</surname><given-names>Robert J.</given-names></name><email>schmitz@uga.edu</email><xref ref-type="aff" rid="A1">1</xref><xref ref-type="aff" rid="A2">2</xref></contrib></contrib-group><aff id="A1"><label>1</label>Department of Genetics, University of Georgia, Athens, Georgia 30602</aff><aff id="A2"><label>2</label>Institute of Bioinformatics, University of Georgia, Athens, Georgia 30602</aff><pub-date pub-type="nihms-submitted"><day>6</day><month>6</month><year>2015</year></pub-date><pub-date pub-type="epub"><day>15</day><month>8</month><year>2014</year></pub-date><pub-date pub-type="ppub"><year>2014</year></pub-date><pub-date pub-type="pmc-release"><day>15</day><month>8</month><year>2015</year></pub-date><volume>48</volume><fpage>49</fpage><lpage>70</lpage><pmc-comment>elocation-id from pubmed: 10.1146/annurev-genet-120213-092443</pmc-comment>
<permissions><copyright-statement>Copyright © 2014 by Annual Reviews. All rights reserved</copyright-statement><copyright-year>2014</copyright-year></permissions><abstract><p id="P1">ENCODE projects exist for many eukaryotes, including humans, but as of yet no defined project exists for plants. A plant ENCODE would be invaluable to the research community and could be more readily produced than its metazoan equivalents by capitalizing on the preexisting infrastructure provided from similar projects. Collecting and normalizing plant epigenomic data for a range of species will facilitate hypothesis generation, cross-species comparisons, annotation of genomes, and an understanding of epigenomic functions throughout plant evolution. Here, we discuss the need for such a project, outline the challenges it faces, and suggest ways forward to build a plant ENCODE.</p></abstract><kwd-group><kwd>DNA elements</kwd><kwd>comparative epigenomics</kwd><kwd>epigenetics</kwd></kwd-group></article-meta></front></pmc></record>Pour manipuler ce document sous Unix (Dilib)
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