Sequencing our way towards understanding global eukaryotic biodiversity
Identifieur interne : 000281 ( Ncbi/Merge ); précédent : 000280; suivant : 000282Sequencing our way towards understanding global eukaryotic biodiversity
Auteurs : Holly M. Bik [États-Unis] ; Dorota L. Porazinska [États-Unis] ; Simon Creer [Royaume-Uni] ; J. Gregory Caporaso [États-Unis] ; Rob Knight [États-Unis] ; W. Kelley Thomas [États-Unis]Source :
- Trends in ecology & evolution [ 0169-5347 ] ; 2012.
Abstract
Microscopic eukaryotes are abundant, diverse, and fill critical ecological roles across every ecosystem on earth, yet there is a well-recognized gap in our understanding of their global biodiversity. Fundamental advances in DNA sequencing and bioinformatics now allow accurate
Url:
DOI: 10.1016/j.tree.2011.11.010
PubMed: 22244672
PubMed Central: 3311718
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<front><div type="abstract" xml:lang="en"><p id="P2">Microscopic eukaryotes are abundant, diverse, and fill critical ecological roles across every ecosystem on earth, yet there is a well-recognized gap in our understanding of their global biodiversity. Fundamental advances in DNA sequencing and bioinformatics now allow accurate <italic>en masse</italic>
biodiversity assessments of microscopic eukaryotes from environmental samples. Despite a promising outlook, the field of eukaryotic marker gene surveys faces significant challenges: how to generate data that is most useful to the community, especially in the face of evolving sequencing technology and bioinformatics pipelines, and how to incorporate an expanding number of target genes.</p>
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</front>
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<journal-id journal-id-type="nlm-ta">Trends Ecol Evol</journal-id>
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<contrib-group><contrib contrib-type="author"><name><surname>Bik</surname>
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<xref rid="FN1" ref-type="author-notes">*</xref>
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Hubbard Center for Genome Studies, University of New Hampshire, 35 Colovos Rd, Durham, NH 03824, USA</aff>
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Fort Lauderdale Research and Education Center, University of Florida, IFAS, 3205 College Avenue, Fort Lauderdale, FL 33314, USA</aff>
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School of Biological Sciences, Environment Centre Wales, Deiniol Road, College of Natural Sciences, Bangor University, Gwynedd LL57 2UW, UK</aff>
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Department of Computer Science, Northern Arizona University, Flagstaff, AZ 86011, USA</aff>
<aff id="A5"><label>5</label>
Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309, USA</aff>
<aff id="A6"><label>6</label>
Howard Hughes Medical Institute, Boulder, CO 80309, USA</aff>
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Corresponding Author: <email>holly.bik@gmail.com</email>
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<abstract><p id="P2">Microscopic eukaryotes are abundant, diverse, and fill critical ecological roles across every ecosystem on earth, yet there is a well-recognized gap in our understanding of their global biodiversity. Fundamental advances in DNA sequencing and bioinformatics now allow accurate <italic>en masse</italic>
biodiversity assessments of microscopic eukaryotes from environmental samples. Despite a promising outlook, the field of eukaryotic marker gene surveys faces significant challenges: how to generate data that is most useful to the community, especially in the face of evolving sequencing technology and bioinformatics pipelines, and how to incorporate an expanding number of target genes.</p>
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