CyberinfraV1, Ncbi, Merge, bibRecord, 000281

Sequencing our way towards understanding global eukaryotic biodiversity

Identifieur interne : 000281 ( Ncbi/Merge ); précédent : 000280; suivant : 000282

Sequencing our way towards understanding global eukaryotic biodiversity

Auteurs : Holly M. Bik [États-Unis] ; Dorota L. Porazinska [États-Unis] ; Simon Creer [Royaume-Uni] ; J. Gregory Caporaso [États-Unis] ; Rob Knight [États-Unis] ; W. Kelley Thomas [États-Unis]

Source :

Trends in ecology & evolution [ 0169-5347 ] ; 2012.

RBID : PMC:3311718

Abstract

Microscopic eukaryotes are abundant, diverse, and fill critical ecological roles across every ecosystem on earth, yet there is a well-recognized gap in our understanding of their global biodiversity. Fundamental advances in DNA sequencing and bioinformatics now allow accurate en masse biodiversity assessments of microscopic eukaryotes from environmental samples. Despite a promising outlook, the field of eukaryotic marker gene surveys faces significant challenges: how to generate data that is most useful to the community, especially in the face of evolving sequencing technology and bioinformatics pipelines, and how to incorporate an expanding number of target genes.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3311718

DOI: 10.1016/j.tree.2011.11.010
PubMed: 22244672
PubMed Central: 3311718

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<author><name sortKey="Porazinska, Dorota L" sort="Porazinska, Dorota L" uniqKey="Porazinska D" first="Dorota L." last="Porazinska">Dorota L. Porazinska</name>
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<author><name sortKey="Porazinska, Dorota L" sort="Porazinska, Dorota L" uniqKey="Porazinska D" first="Dorota L." last="Porazinska">Dorota L. Porazinska</name>
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<author><name sortKey="Creer, Simon" sort="Creer, Simon" uniqKey="Creer S" first="Simon" last="Creer">Simon Creer</name>
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<wicri:regionArea>School of Biological Sciences, Environment Centre Wales, Deiniol Road, College of Natural Sciences, Bangor University, Gwynedd LL57 2UW</wicri:regionArea>
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<author><name sortKey="Thomas, W Kelley" sort="Thomas, W Kelley" uniqKey="Thomas W" first="W. Kelley" last="Thomas">W. Kelley Thomas</name>
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<series><title level="j">Trends in ecology & evolution</title>
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<front><div type="abstract" xml:lang="en"><p id="P2">Microscopic eukaryotes are abundant, diverse, and fill critical ecological roles across every ecosystem on earth, yet there is a well-recognized gap in our understanding of their global biodiversity. Fundamental advances in DNA sequencing and bioinformatics now allow accurate <italic>en masse</italic>
 biodiversity assessments of microscopic eukaryotes from environmental samples. Despite a promising outlook, the field of eukaryotic marker gene surveys faces significant challenges: how to generate data that is most useful to the community, especially in the face of evolving sequencing technology and bioinformatics pipelines, and how to incorporate an expanding number of target genes.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article"><pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
  <pmc-dir>properties manuscript</pmc-dir>
  <front><journal-meta><journal-id journal-id-type="nlm-journal-id">8805125</journal-id>
<journal-id journal-id-type="pubmed-jr-id">20449</journal-id>
<journal-id journal-id-type="nlm-ta">Trends Ecol Evol</journal-id>
<journal-id journal-id-type="iso-abbrev">Trends Ecol. Evol. (Amst.)</journal-id>
<journal-title-group><journal-title>Trends in ecology & evolution</journal-title>
</journal-title-group>
<issn pub-type="ppub">0169-5347</issn>
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<article-meta><article-id pub-id-type="pmid">22244672</article-id>
<article-id pub-id-type="pmc">3311718</article-id>
<article-id pub-id-type="doi">10.1016/j.tree.2011.11.010</article-id>
<article-id pub-id-type="manuscript">NIHMS341390</article-id>
<article-categories><subj-group subj-group-type="heading"><subject>Article</subject>
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</article-categories>
<title-group><article-title>Sequencing our way towards understanding global eukaryotic biodiversity</article-title>
</title-group>
<contrib-group><contrib contrib-type="author"><name><surname>Bik</surname>
<given-names>Holly M.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
<xref rid="FN1" ref-type="author-notes">*</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Porazinska</surname>
<given-names>Dorota L.</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Creer</surname>
<given-names>Simon</given-names>
</name>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Caporaso</surname>
<given-names>J. Gregory</given-names>
</name>
<xref ref-type="aff" rid="A4">4</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Knight</surname>
<given-names>Rob</given-names>
</name>
<xref ref-type="aff" rid="A5">5</xref>
<xref ref-type="aff" rid="A6">6</xref>
</contrib>
<contrib contrib-type="author"><name><surname>Thomas</surname>
<given-names>W. Kelley</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
</contrib-group>
<aff id="A1"><label>1</label>
Hubbard Center for Genome Studies, University of New Hampshire, 35 Colovos Rd, Durham, NH 03824, USA</aff>
<aff id="A2"><label>2</label>
Fort Lauderdale Research and Education Center, University of Florida, IFAS, 3205 College Avenue, Fort Lauderdale, FL 33314, USA</aff>
<aff id="A3"><label>3</label>
School of Biological Sciences, Environment Centre Wales, Deiniol Road, College of Natural Sciences, Bangor University, Gwynedd LL57 2UW, UK</aff>
<aff id="A4"><label>4</label>
Department of Computer Science, Northern Arizona University, Flagstaff, AZ 86011, USA</aff>
<aff id="A5"><label>5</label>
Department of Chemistry and Biochemistry, University of Colorado, Boulder, CO 80309, USA</aff>
<aff id="A6"><label>6</label>
Howard Hughes Medical Institute, Boulder, CO 80309, USA</aff>
<author-notes><corresp id="FN1"><label>*</label>
Corresponding Author: <email>holly.bik@gmail.com</email>
</corresp>
</author-notes>
<pub-date pub-type="nihms-submitted"><day>21</day>
<month>12</month>
<year>2011</year>
</pub-date>
<pub-date pub-type="epub"><day>11</day>
<month>1</month>
<year>2012</year>
</pub-date>
<pub-date pub-type="ppub"><month>4</month>
<year>2012</year>
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<pub-date pub-type="pmc-release"><day>01</day>
<month>4</month>
<year>2013</year>
</pub-date>
<volume>27</volume>
<issue>4</issue>
<fpage>233</fpage>
<lpage>243</lpage>
<permissions><copyright-statement>© 2011 Elsevier Ltd. All rights reserved.</copyright-statement>
<copyright-year>2011</copyright-year>
</permissions>
<abstract><p id="P2">Microscopic eukaryotes are abundant, diverse, and fill critical ecological roles across every ecosystem on earth, yet there is a well-recognized gap in our understanding of their global biodiversity. Fundamental advances in DNA sequencing and bioinformatics now allow accurate <italic>en masse</italic>
 biodiversity assessments of microscopic eukaryotes from environmental samples. Despite a promising outlook, the field of eukaryotic marker gene surveys faces significant challenges: how to generate data that is most useful to the community, especially in the face of evolving sequencing technology and bioinformatics pipelines, and how to incorporate an expanding number of target genes.</p>
</abstract>
<funding-group><award-group><funding-source country="United States">National Center for Research Resources : NCRR</funding-source>
<award-id>P20 RR030360-01 || RR</award-id>
</award-group>
</funding-group>
</article-meta>
</front>
</pmc>
<affiliations><list><country><li>Royaume-Uni</li>
<li>États-Unis</li>
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<region><li>Arizona</li>
<li>Colorado</li>
<li>Floride</li>
<li>New Hampshire</li>
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<tree><country name="États-Unis"><region name="New Hampshire"><name sortKey="Bik, Holly M" sort="Bik, Holly M" uniqKey="Bik H" first="Holly M." last="Bik">Holly M. Bik</name>
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<name sortKey="Caporaso, J Gregory" sort="Caporaso, J Gregory" uniqKey="Caporaso J" first="J. Gregory" last="Caporaso">J. Gregory Caporaso</name>
<name sortKey="Knight, Rob" sort="Knight, Rob" uniqKey="Knight R" first="Rob" last="Knight">Rob Knight</name>
<name sortKey="Knight, Rob" sort="Knight, Rob" uniqKey="Knight R" first="Rob" last="Knight">Rob Knight</name>
<name sortKey="Porazinska, Dorota L" sort="Porazinska, Dorota L" uniqKey="Porazinska D" first="Dorota L." last="Porazinska">Dorota L. Porazinska</name>
<name sortKey="Thomas, W Kelley" sort="Thomas, W Kelley" uniqKey="Thomas W" first="W. Kelley" last="Thomas">W. Kelley Thomas</name>
</country>
<country name="Royaume-Uni"><noRegion><name sortKey="Creer, Simon" sort="Creer, Simon" uniqKey="Creer S" first="Simon" last="Creer">Simon Creer</name>
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Sequencing our way towards understanding global eukaryotic biodiversity

Sequencing our way towards understanding global eukaryotic biodiversity

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Abstract

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