Data integration in biological research: an overview
Identifieur interne : 000666 ( Ncbi/Curation ); précédent : 000665; suivant : 000667Data integration in biological research: an overview
Auteurs : Vasileios Lapatas [Grèce] ; Michalis Stefanidakis [Grèce] ; Rafael C. Jimenez ; Allegra Via [Italie] ; Maria Victoria SchneiderSource :
- Journal of Biological Research [ 1790-045X ] ; 2015.
Abstract
Data sharing, integration and annotation are essential to ensure the reproducibility of the analysis and interpretation of the experimental findings. Often these activities are perceived as a role that bioinformaticians and computer scientists have to take with no or little input from the experimental biologist. On the contrary, biological researchers, being the producers and often the end users of such data, have a big role in enabling biological data integration. The quality and usefulness of data integration depend on the existence and adoption of standards, shared formats, and mechanisms that are suitable for biological researchers to submit and annotate the data, so it can be easily searchable, conveniently linked and consequently used for further biological analysis and discovery. Here, we provide background on what is data integration from a computational science point of view, how it has been applied to biological research, which key aspects contributed to its success and future directions.
Url:
DOI: 10.1186/s40709-015-0032-5
PubMed: 26336651
PubMed Central: 4557916
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Rafael C. Jimenez<affiliation><nlm:aff id="Aff2">ELIXIR, Wellcome Trust Genome Campus, Hinxton, CB10 1SD UK</nlm:aff>
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<affiliation><nlm:aff id="Aff4">361° Division, The Genome Analysis Centre, Norwich Research Park, Norwich, NR4 7UH UK</nlm:aff>
<wicri:noCountry code="subfield">NR4 7UH UK</wicri:noCountry>
</affiliation>
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<front><div type="abstract" xml:lang="en"><p>Data sharing, integration and annotation are essential to ensure the reproducibility of the analysis and interpretation of the experimental findings. Often these activities are perceived as a role that bioinformaticians and computer scientists have to take with no or little input from the experimental biologist. On the contrary, biological researchers, being the producers and often the end users of such data, have a big role in enabling biological data integration. The quality and usefulness of data integration depend on the existence and adoption of standards, shared formats, and mechanisms that are suitable for biological researchers to submit and annotate the data, so it can be easily searchable, conveniently linked and consequently used for further biological analysis and discovery. Here, we provide background on what is data integration from a computational science point of view, how it has been applied to biological research, which key aspects contributed to its success and future directions.</p>
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