SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
Identifieur interne : 000183 ( Main/Exploration ); précédent : 000182; suivant : 000184SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
Auteurs : Jennifer Wyffels [États-Unis] ; Benjamin L. King [États-Unis] ; James Vincent [États-Unis] ; Chuming Chen [États-Unis] ; Cathy H. Wu [États-Unis] ; Shawn W. Polson [États-Unis]Source :
- F1000Research [ 2046-1402 ] ; 2014.
Abstract
Chondrichthyan fishes are a diverse class of gnathostomes that provide a valuable perspective on fundamental characteristics shared by all jawed and limbed vertebrates. Studies of phylogeny, species diversity, population structure, conservation, and physiology are accelerated by genomic, transcriptomic and protein sequence data. These data are widely available for many sarcopterygii (coelacanth, lungfish and tetrapods) and actinoptergii (ray-finned fish including teleosts) taxa, but limited for chondrichthyan fishes. In this study, we summarize available data for chondrichthyes and describe resources for one of the largest projects to characterize one of these fish,
Url:
DOI: 10.12688/f1000research.4996.1
PubMed: 25309735
PubMed Central: 4184313
Affiliations:
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King">Benjamin L. King</name><affiliation wicri:level="1"><nlm:aff id="a2">Mount Desert Island Biological Laboratory, Salisbury Cove, ME, 04672, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Mount Desert Island Biological Laboratory, Salisbury Cove, ME, 04672</wicri:regionArea><wicri:noRegion>04672</wicri:noRegion></affiliation></author><author><name sortKey="Vincent, James" sort="Vincent, James" uniqKey="Vincent J" first="James" last="Vincent">James Vincent</name><affiliation wicri:level="1"><nlm:aff id="a3">Vermont Genetics Network, University of Vermont, Burlington, VT, 05405, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Vermont Genetics Network, University of Vermont, Burlington, VT, 05405</wicri:regionArea><wicri:noRegion>05405</wicri:noRegion></affiliation></author><author><name sortKey="Chen, Chuming" sort="Chen, Chuming" uniqKey="Chen C" first="Chuming" last="Chen">Chuming Chen</name><affiliation wicri:level="1"><nlm:aff id="a1">Department of Computer and Information Sciences, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer and Information Sciences, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711</wicri:regionArea><wicri:noRegion>19711</wicri:noRegion></affiliation></author><author><name sortKey="Wu, Cathy H" sort="Wu, Cathy H" uniqKey="Wu C" first="Cathy H." last="Wu">Cathy H. Wu</name><affiliation wicri:level="1"><nlm:aff id="a1">Department of Computer and Information Sciences, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer and Information Sciences, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711</wicri:regionArea><wicri:noRegion>19711</wicri:noRegion></affiliation></author><author><name sortKey="Polson, Shawn W" sort="Polson, Shawn W" uniqKey="Polson S" first="Shawn W." last="Polson">Shawn W. Polson</name><affiliation wicri:level="1"><nlm:aff id="a1">Department of Computer and Information Sciences, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Computer and Information Sciences, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, 19711</wicri:regionArea><wicri:noRegion>19711</wicri:noRegion></affiliation></author></analytic><series><title level="j">F1000Research</title><idno type="eISSN">2046-1402</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Chondrichthyan fishes are a diverse class of gnathostomes that provide a valuable perspective on fundamental characteristics shared by all jawed and limbed vertebrates. Studies of phylogeny, species diversity, population structure, conservation, and physiology are accelerated by genomic, transcriptomic and protein sequence data. These data are widely available for many sarcopterygii (coelacanth, lungfish and tetrapods) and actinoptergii (ray-finned fish including teleosts) taxa, but limited for chondrichthyan fishes. In this study, we summarize available data for chondrichthyes and describe resources for one of the largest projects to characterize one of these fish,
<italic>Leucoraja erinacea</italic>, the little skate. SkateBase (
<ext-link ext-link-type="uri" xlink:href="http://skatebase.org">http://skatebase.org</ext-link>) serves as the skate genome project portal linking data, research tools, and teaching resources.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Inoue, Jg" uniqKey="Inoue J">JG Inoue</name></author><author><name sortKey="Miya, M" uniqKey="Miya M">M Miya</name></author><author><name sortKey="Lam, K" uniqKey="Lam K">K Lam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ebert, Da" uniqKey="Ebert D">DA Ebert</name></author><author><name sortKey="Ho, H" uniqKey="Ho H">H Ho</name></author><author><name sortKey="White, Wt" uniqKey="White W">WT White</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stevens, J" uniqKey="Stevens J">J Stevens</name></author><author><name sortKey="Bonfil, R" uniqKey="Bonfil R">R Bonfil</name></author><author><name sortKey="Dulvy, Nk" 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King">Benjamin L. King</name><name sortKey="Polson, Shawn W" sort="Polson, Shawn W" uniqKey="Polson S" first="Shawn W." last="Polson">Shawn W. Polson</name><name sortKey="Vincent, James" sort="Vincent, James" uniqKey="Vincent J" first="James" last="Vincent">James Vincent</name><name sortKey="Wu, Cathy H" sort="Wu, Cathy H" uniqKey="Wu C" first="Cathy H." last="Wu">Cathy H. Wu</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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