Long-term Rasamsonia argillacea complex species colonization revealed by rep-PCR in cystic fibrosis patients.
Identifieur interne : 000015 ( PubMed/Corpus ); précédent : 000014; suivant : 000016Long-term Rasamsonia argillacea complex species colonization revealed by rep-PCR in cystic fibrosis patients.
Auteurs : Abdelmounaim Mouhajir ; Olivier Matray ; Sandrine Giraud ; Laurent Mély ; Christophe Marguet ; Isabelle Sermet-Gaudelus ; Solène Le Gal ; Franck Labbé ; Christine Person ; Françoise Troussier ; Jean Jacques Ballet ; Gilles Gargala ; Rachid Zouhair ; Marie-Elisabeth Bougnoux ; Jean-Philippe Bouchara ; Loïc FavennecSource :
- Journal of clinical microbiology [ 1098-660X ] ; 2016.
Abstract
The aim of this work was to document molecular epidemiology of Rasamsonia argillacea species complex isolates from cystic fibrosis (CF) patients. In this work, 116 isolates belonging to this species complex and collected from 26 CF patients and one patient with chronic granulomatous disease were characterized using PCR amplification assays of repetitive DNA sequences, and electrophoretic separation of amplicons (rep-PCR). Data revealed a clustering consistent with molecular species identification. A single species was recovered from most patients. Rasamsonia aegroticola was the most common species, followed by R. argillacea stricto sensu and R. piperina, while R. eburnea was not identified. Of 29 genotypes, 7 were shared by distinct patients, while 22 were patient-specific. In each clinical sample, most isolates exhibited an identical genotype. Genotyping of isolates recovered from sequential samples from the same patient confirmed the capability of R. aegroticola and R. argillacea isolates to chronically colonize the airways. A unique genotype was recovered from two siblings during a 6-month period. In the other cases, a largely dominant genotype was detected. Present results which support the use of rep-PCR for both identification and genotyping for the R. argillacea species complex, provide the first molecular evidence of chronic airway colonization by these fungi in CF patients.
DOI: 10.1128/JCM.01462-16
PubMed: 27605712
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Sandrine" uniqKey="Giraud S" first="Sandrine" last="Giraud">Sandrine Giraud</name><affiliation><nlm:affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mely, Laurent" sort="Mely, Laurent" uniqKey="Mely L" first="Laurent" last="Mély">Laurent Mély</name><affiliation><nlm:affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Hôpital Renée Sabran, Giens, France.</nlm:affiliation></affiliation></author><author><name sortKey="Marguet, Christophe" sort="Marguet, Christophe" uniqKey="Marguet C" first="Christophe" last="Marguet">Christophe Marguet</name><affiliation><nlm:affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Service de Pédiatrie, Hôpital Charles Nicolle, Rouen, France.</nlm:affiliation></affiliation></author><author><name sortKey="Sermet Gaudelus, Isabelle" sort="Sermet Gaudelus, Isabelle" uniqKey="Sermet Gaudelus 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sort="Gargala, Gilles" uniqKey="Gargala G" first="Gilles" last="Gargala">Gilles Gargala</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zouhair, Rachid" sort="Zouhair, Rachid" uniqKey="Zouhair R" first="Rachid" last="Zouhair">Rachid Zouhair</name><affiliation><nlm:affiliation>University Moulay Ismail, Faculty of Sciences, Meknes, Morocco.</nlm:affiliation></affiliation></author><author><name sortKey="Bougnoux, Marie Elisabeth" sort="Bougnoux, Marie Elisabeth" uniqKey="Bougnoux M" first="Marie-Elisabeth" last="Bougnoux">Marie-Elisabeth Bougnoux</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire Necker-Enfants Malades, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bouchara, Jean Philippe" sort="Bouchara, Jean Philippe" uniqKey="Bouchara J" first="Jean-Philippe" last="Bouchara">Jean-Philippe Bouchara</name><affiliation><nlm:affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Angers, France.</nlm:affiliation></affiliation></author><author><name sortKey="Favennec, Loic" sort="Favennec, Loic" uniqKey="Favennec L" first="Loïc" last="Favennec">Loïc Favennec</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France loic.favennec@chu-rouen.fr.</nlm:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:27605712</idno><idno type="pmid">27605712</idno><idno type="doi">10.1128/JCM.01462-16</idno><idno type="wicri:Area/PubMed/Corpus">000015</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Long-term Rasamsonia argillacea complex species colonization revealed by rep-PCR in cystic fibrosis patients.</title><author><name sortKey="Mouhajir, Abdelmounaim" sort="Mouhajir, Abdelmounaim" uniqKey="Mouhajir A" first="Abdelmounaim" last="Mouhajir">Abdelmounaim Mouhajir</name><affiliation><nlm:affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France University Moulay Ismail, Faculty of Sciences, Meknes, Morocco.</nlm:affiliation></affiliation></author><author><name sortKey="Matray, Olivier" sort="Matray, Olivier" uniqKey="Matray O" first="Olivier" last="Matray">Olivier Matray</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France.</nlm:affiliation></affiliation></author><author><name sortKey="Giraud, Sandrine" sort="Giraud, Sandrine" uniqKey="Giraud S" first="Sandrine" last="Giraud">Sandrine Giraud</name><affiliation><nlm:affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France.</nlm:affiliation></affiliation></author><author><name sortKey="Mely, Laurent" sort="Mely, Laurent" uniqKey="Mely L" first="Laurent" last="Mély">Laurent Mély</name><affiliation><nlm:affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Hôpital Renée Sabran, Giens, France.</nlm:affiliation></affiliation></author><author><name sortKey="Marguet, Christophe" sort="Marguet, Christophe" uniqKey="Marguet C" first="Christophe" last="Marguet">Christophe Marguet</name><affiliation><nlm:affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Service de Pédiatrie, Hôpital Charles Nicolle, Rouen, France.</nlm:affiliation></affiliation></author><author><name sortKey="Sermet Gaudelus, Isabelle" sort="Sermet Gaudelus, Isabelle" uniqKey="Sermet Gaudelus I" first="Isabelle" last="Sermet-Gaudelus">Isabelle Sermet-Gaudelus</name><affiliation><nlm:affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Unité de Pédiatrie, Hôpital Necker-Enfants Malades, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Le Gal, Solene" sort="Le Gal, Solene" uniqKey="Le Gal S" first="Solène" last="Le Gal">Solène Le Gal</name><affiliation><nlm:affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Brest, France.</nlm:affiliation></affiliation></author><author><name sortKey="Labbe, Franck" sort="Labbe, Franck" uniqKey="Labbe F" first="Franck" last="Labbé">Franck Labbé</name><affiliation><nlm:affiliation>Laboratoire de Microbiologie, Hôpital Jacques Monod, Le Havre, France.</nlm:affiliation></affiliation></author><author><name sortKey="Person, Christine" sort="Person, Christine" uniqKey="Person C" first="Christine" last="Person">Christine Person</name><affiliation><nlm:affiliation>Centre de Ressources et de Compétences en Mucoviscidose Adultes, Service de Pneumologie, Centre Hospitalier Universitaire, Angers, France.</nlm:affiliation></affiliation></author><author><name sortKey="Troussier, Francoise" sort="Troussier, Francoise" uniqKey="Troussier F" first="Françoise" last="Troussier">Françoise Troussier</name><affiliation><nlm:affiliation>Centre de Ressources et de Compétences en Mucoviscidose Enfants, Service de Pédiatrie, Centre Hospitalier Universitaire, Angers, France.</nlm:affiliation></affiliation></author><author><name sortKey="Ballet, Jean Jacques" sort="Ballet, Jean Jacques" uniqKey="Ballet J" first="Jean Jacques" last="Ballet">Jean Jacques Ballet</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France.</nlm:affiliation></affiliation></author><author><name sortKey="Gargala, Gilles" sort="Gargala, Gilles" uniqKey="Gargala G" first="Gilles" last="Gargala">Gilles Gargala</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France.</nlm:affiliation></affiliation></author><author><name sortKey="Zouhair, Rachid" sort="Zouhair, Rachid" uniqKey="Zouhair R" first="Rachid" last="Zouhair">Rachid Zouhair</name><affiliation><nlm:affiliation>University Moulay Ismail, Faculty of Sciences, Meknes, Morocco.</nlm:affiliation></affiliation></author><author><name sortKey="Bougnoux, Marie Elisabeth" sort="Bougnoux, Marie Elisabeth" uniqKey="Bougnoux M" first="Marie-Elisabeth" last="Bougnoux">Marie-Elisabeth Bougnoux</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire Necker-Enfants Malades, Paris, France.</nlm:affiliation></affiliation></author><author><name sortKey="Bouchara, Jean Philippe" sort="Bouchara, Jean Philippe" uniqKey="Bouchara J" first="Jean-Philippe" last="Bouchara">Jean-Philippe Bouchara</name><affiliation><nlm:affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Angers, France.</nlm:affiliation></affiliation></author><author><name sortKey="Favennec, Loic" sort="Favennec, Loic" uniqKey="Favennec L" first="Loïc" last="Favennec">Loïc Favennec</name><affiliation><nlm:affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France loic.favennec@chu-rouen.fr.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Journal of clinical microbiology</title><idno type="eISSN">1098-660X</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The aim of this work was to document molecular epidemiology of Rasamsonia argillacea species complex isolates from cystic fibrosis (CF) patients. In this work, 116 isolates belonging to this species complex and collected from 26 CF patients and one patient with chronic granulomatous disease were characterized using PCR amplification assays of repetitive DNA sequences, and electrophoretic separation of amplicons (rep-PCR). Data revealed a clustering consistent with molecular species identification. A single species was recovered from most patients. Rasamsonia aegroticola was the most common species, followed by R. argillacea stricto sensu and R. piperina, while R. eburnea was not identified. Of 29 genotypes, 7 were shared by distinct patients, while 22 were patient-specific. In each clinical sample, most isolates exhibited an identical genotype. Genotyping of isolates recovered from sequential samples from the same patient confirmed the capability of R. aegroticola and R. argillacea isolates to chronically colonize the airways. A unique genotype was recovered from two siblings during a 6-month period. In the other cases, a largely dominant genotype was detected. Present results which support the use of rep-PCR for both identification and genotyping for the R. argillacea species complex, provide the first molecular evidence of chronic airway colonization by these fungi in CF patients.</div></front></TEI><pubmed><MedlineCitation Status="Publisher" Owner="NLM"><PMID Version="1">27605712</PMID><DateCreated><Year>2016</Year><Month>9</Month><Day>8</Day></DateCreated><DateRevised><Year>2016</Year><Month>9</Month><Day>8</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-660X</ISSN><JournalIssue CitedMedium="Internet"><PubDate><Year>2016</Year><Month>Sep</Month><Day>7</Day></PubDate></JournalIssue><Title>Journal of clinical microbiology</Title><ISOAbbreviation>J. Clin. Microbiol.</ISOAbbreviation></Journal><ArticleTitle>Long-term Rasamsonia argillacea complex species colonization revealed by rep-PCR in cystic fibrosis patients.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">JCM.01462-16</ELocationID><Abstract><AbstractText NlmCategory="UNASSIGNED">The aim of this work was to document molecular epidemiology of Rasamsonia argillacea species complex isolates from cystic fibrosis (CF) patients. In this work, 116 isolates belonging to this species complex and collected from 26 CF patients and one patient with chronic granulomatous disease were characterized using PCR amplification assays of repetitive DNA sequences, and electrophoretic separation of amplicons (rep-PCR). Data revealed a clustering consistent with molecular species identification. A single species was recovered from most patients. Rasamsonia aegroticola was the most common species, followed by R. argillacea stricto sensu and R. piperina, while R. eburnea was not identified. Of 29 genotypes, 7 were shared by distinct patients, while 22 were patient-specific. In each clinical sample, most isolates exhibited an identical genotype. Genotyping of isolates recovered from sequential samples from the same patient confirmed the capability of R. aegroticola and R. argillacea isolates to chronically colonize the airways. A unique genotype was recovered from two siblings during a 6-month period. In the other cases, a largely dominant genotype was detected. Present results which support the use of rep-PCR for both identification and genotyping for the R. argillacea species complex, provide the first molecular evidence of chronic airway colonization by these fungi in CF patients.</AbstractText><CopyrightInformation>Copyright © 2016, American Society for Microbiology. All Rights Reserved.</CopyrightInformation></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Mouhajir</LastName><ForeName>Abdelmounaim</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France University Moulay Ismail, Faculty of Sciences, Meknes, Morocco.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Matray</LastName><ForeName>Olivier</ForeName><Initials>O</Initials><AffiliationInfo><Affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Giraud</LastName><ForeName>Sandrine</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mély</LastName><ForeName>Laurent</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Hôpital Renée Sabran, Giens, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Marguet</LastName><ForeName>Christophe</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Service de Pédiatrie, Hôpital Charles Nicolle, Rouen, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Sermet-Gaudelus</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials><AffiliationInfo><Affiliation>Centre de Ressources et de Compétences en Mucoviscidose, Unité de Pédiatrie, Hôpital Necker-Enfants Malades, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Le Gal</LastName><ForeName>Solène</ForeName><Initials>S</Initials><AffiliationInfo><Affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Brest, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Labbé</LastName><ForeName>Franck</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Laboratoire de Microbiologie, Hôpital Jacques Monod, Le Havre, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Person</LastName><ForeName>Christine</ForeName><Initials>C</Initials><AffiliationInfo><Affiliation>Centre de Ressources et de Compétences en Mucoviscidose Adultes, Service de Pneumologie, Centre Hospitalier Universitaire, Angers, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Troussier</LastName><ForeName>Françoise</ForeName><Initials>F</Initials><AffiliationInfo><Affiliation>Centre de Ressources et de Compétences en Mucoviscidose Enfants, Service de Pédiatrie, Centre Hospitalier Universitaire, Angers, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ballet</LastName><ForeName>Jean Jacques</ForeName><Initials>JJ</Initials><AffiliationInfo><Affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gargala</LastName><ForeName>Gilles</ForeName><Initials>G</Initials><AffiliationInfo><Affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Zouhair</LastName><ForeName>Rachid</ForeName><Initials>R</Initials><AffiliationInfo><Affiliation>University Moulay Ismail, Faculty of Sciences, Meknes, Morocco.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bougnoux</LastName><ForeName>Marie-Elisabeth</ForeName><Initials>ME</Initials><AffiliationInfo><Affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire Necker-Enfants Malades, Paris, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Bouchara</LastName><ForeName>Jean-Philippe</ForeName><Initials>JP</Initials><AffiliationInfo><Affiliation>L'UNAM Université, Université d'Angers, Groupe d'Etude des Interactions Hôte-Pathogène, EA 3142, Angers, France Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Angers, France.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Favennec</LastName><ForeName>Loïc</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Laboratoire de Parasitologie-Mycologie, Centre Hospitalier Universitaire, Rouen, France Normandie Univ, UNIROUEN, EA 3800, 76000 Rouen, France loic.favennec@chu-rouen.fr.</Affiliation></AffiliationInfo></Author></AuthorList><Language>ENG</Language><PublicationTypeList><PublicationType UI="">JOURNAL ARTICLE</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2016</Year><Month>Sep</Month><Day>7</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>J Clin Microbiol</MedlineTA><NlmUniqueID>7505564</NlmUniqueID><ISSNLinking>0095-1137</ISSNLinking></MedlineJournalInfo></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2016</Year><Month>9</Month><Day>9</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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