A heuristic managing errors for DNA sequencing
Identifieur interne : 000C23 ( Istex/Corpus ); précédent : 000C22; suivant : 000C24A heuristic managing errors for DNA sequencing
Auteurs : Jacek Błaz Ewicz ; Piotr Formanowicz ; Frederic Guinand ; Marta KasprzakSource :
- Bioinformatics [ 1367-4803 ] ; 2002-05.
Abstract
Motivation: A new heuristic algorithm for solving DNA sequencing by hybridization problem with positive and negative errors. Results: A heuristic algorithm providing better solutions than algorithms known from the literature based on tabu search method. Contact: blazewic@sol.put.poznan.pl * To whom correspondence should be addressed.
Url:
DOI: 10.1093/bioinformatics/18.5.652
Links to Exploration step
ISTEX:27558C0003C5AB845A99370A129A677797E4EC5FLe document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">A heuristic managing errors for DNA sequencing</title><author><name sortKey="Blaz Ewicz, Jacek" sort="Blaz Ewicz, Jacek" uniqKey="Blaz Ewicz J" first="Jacek" last="Błaz Ewicz">Jacek Błaz Ewicz</name><affiliation><mods:affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</mods:affiliation></affiliation></author><author><name sortKey="Formanowicz, Piotr" sort="Formanowicz, Piotr" uniqKey="Formanowicz P" first="Piotr" last="Formanowicz">Piotr Formanowicz</name><affiliation><mods:affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</mods:affiliation></affiliation></author><author><name sortKey="Guinand, Frederic" sort="Guinand, Frederic" uniqKey="Guinand F" first="Frederic" last="Guinand">Frederic Guinand</name><affiliation><mods:affiliation>LIH - Le Havre University, BP 540 76058 Le Havre cedex, France</mods:affiliation></affiliation></author><author><name sortKey="Kasprzak, Marta" sort="Kasprzak, Marta" uniqKey="Kasprzak M" first="Marta" last="Kasprzak">Marta Kasprzak</name><affiliation><mods:affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</mods:affiliation></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">ISTEX</idno><idno type="RBID">ISTEX:27558C0003C5AB845A99370A129A677797E4EC5F</idno><date when="2002" year="2002">2002</date><idno type="doi">10.1093/bioinformatics/18.5.652</idno><idno type="url">https://api.istex.fr/document/27558C0003C5AB845A99370A129A677797E4EC5F/fulltext/pdf</idno><idno type="wicri:Area/Istex/Corpus">000C23</idno></publicationStmt><sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">A heuristic managing errors for DNA sequencing</title><author><name sortKey="Blaz Ewicz, Jacek" sort="Blaz Ewicz, Jacek" uniqKey="Blaz Ewicz J" first="Jacek" last="Błaz Ewicz">Jacek Błaz Ewicz</name><affiliation><mods:affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</mods:affiliation></affiliation></author><author><name sortKey="Formanowicz, Piotr" sort="Formanowicz, Piotr" uniqKey="Formanowicz P" first="Piotr" last="Formanowicz">Piotr Formanowicz</name><affiliation><mods:affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</mods:affiliation></affiliation></author><author><name sortKey="Guinand, Frederic" sort="Guinand, Frederic" uniqKey="Guinand F" first="Frederic" last="Guinand">Frederic Guinand</name><affiliation><mods:affiliation>LIH - Le Havre University, BP 540 76058 Le Havre cedex, France</mods:affiliation></affiliation></author><author><name sortKey="Kasprzak, Marta" sort="Kasprzak, Marta" uniqKey="Kasprzak M" first="Marta" last="Kasprzak">Marta Kasprzak</name><affiliation><mods:affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</mods:affiliation></affiliation></author></analytic><monogr></monogr><series><title level="j">Bioinformatics</title><title level="j" type="abbrev">Bioinformatics</title><idno type="ISSN">1367-4803</idno><idno type="eISSN">1460-2059</idno><imprint><publisher>Oxford University Press</publisher><date type="published" when="2002-05">2002-05</date><biblScope unit="volume">18</biblScope><biblScope unit="issue">5</biblScope><biblScope unit="page" from="652">652</biblScope><biblScope unit="page" to="660">660</biblScope></imprint><idno type="ISSN">1367-4803</idno></series><idno type="istex">27558C0003C5AB845A99370A129A677797E4EC5F</idno><idno type="DOI">10.1093/bioinformatics/18.5.652</idno><idno type="PII">1460-2059</idno><idno type="local">180652</idno></biblStruct></sourceDesc><seriesStmt><idno type="ISSN">1367-4803</idno></seriesStmt></fileDesc><profileDesc><textClass></textClass><langUsage><language ident="en">en</language></langUsage></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Motivation: A new heuristic algorithm for solving DNA sequencing by hybridization problem with positive and negative errors. Results: A heuristic algorithm providing better solutions than algorithms known from the literature based on tabu search method. Contact: blazewic@sol.put.poznan.pl * To whom correspondence should be addressed.</div></front></TEI><istex><corpusName>oup</corpusName><author><json:item><name>Jacek Błażewicz</name><affiliations><json:string>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</json:string></affiliations></json:item><json:item><name>Piotr Formanowicz</name><affiliations><json:string>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</json:string></affiliations></json:item><json:item><name>Frederic Guinand</name><affiliations><json:string>LIH - Le Havre University, BP 540 76058 Le Havre cedex, France</json:string></affiliations></json:item><json:item><name>Marta Kasprzak</name><affiliations><json:string>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</json:string></affiliations></json:item></author><language><json:string>eng</json:string></language><originalGenre><json:string>other</json:string></originalGenre><abstract>Motivation: A new heuristic algorithm for solving DNA sequencing by hybridization problem with positive and negative errors. Results: A heuristic algorithm providing better solutions than algorithms known from the literature based on tabu search method. Contact: blazewic@sol.put.poznan.pl * To whom correspondence should be addressed.</abstract><qualityIndicators><score>5.528</score><pdfVersion>1.2</pdfVersion><pdfPageSize>595 x 842 pts (A4)</pdfPageSize><refBibsNative>false</refBibsNative><keywordCount>0</keywordCount><abstractCharCount>335</abstractCharCount><pdfWordCount>5116</pdfWordCount><pdfCharCount>32514</pdfCharCount><pdfPageCount>9</pdfPageCount><abstractWordCount>44</abstractWordCount></qualityIndicators><title>A heuristic managing errors for DNA sequencing</title><pii><json:string>1460-2059</json:string></pii><genre><json:string>other</json:string></genre><host><volume>18</volume><publisherId><json:string>bioinformatics</json:string></publisherId><pages><last>660</last><first>652</first></pages><issn><json:string>1367-4803</json:string></issn><issue>5</issue><genre><json:string>journal</json:string></genre><language><json:string>unknown</json:string></language><eissn><json:string>1460-2059</json:string></eissn><title>Bioinformatics</title></host><categories><wos><json:string>COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS</json:string><json:string>MATHEMATICS, INTERDISCIPLINARY APPLICATIONS</json:string><json:string>STATISTICS & PROBABILITY</json:string><json:string>BIOCHEMICAL RESEARCH METHODS</json:string><json:string>BIOTECHNOLOGY & APPLIED MICROBIOLOGY</json:string><json:string>MATHEMATICAL & COMPUTATIONAL BIOLOGY</json:string></wos></categories><publicationDate>2002</publicationDate><copyrightDate>2002</copyrightDate><doi><json:string>10.1093/bioinformatics/18.5.652</json:string></doi><id>27558C0003C5AB845A99370A129A677797E4EC5F</id><score>0.21416363</score><fulltext><json:item><original>true</original><mimetype>application/pdf</mimetype><extension>pdf</extension><uri>https://api.istex.fr/document/27558C0003C5AB845A99370A129A677797E4EC5F/fulltext/pdf</uri></json:item><json:item><original>false</original><mimetype>application/zip</mimetype><extension>zip</extension><uri>https://api.istex.fr/document/27558C0003C5AB845A99370A129A677797E4EC5F/fulltext/zip</uri></json:item><istex:fulltextTEI uri="https://api.istex.fr/document/27558C0003C5AB845A99370A129A677797E4EC5F/fulltext/tei"><teiHeader><fileDesc><titleStmt><title level="a" type="main" xml:lang="en">A heuristic managing errors for DNA sequencing</title><respStmt><resp>Références bibliographiques récupérées via GROBID</resp><name resp="ISTEX-API">ISTEX-API (INIST-CNRS)</name></respStmt></titleStmt><publicationStmt><authority>ISTEX</authority><publisher>Oxford University Press</publisher><availability><p>© Oxford University Press 2002</p></availability><date>2002</date></publicationStmt><sourceDesc><biblStruct type="inbook"><analytic><title level="a" type="main" xml:lang="en">A heuristic managing errors for DNA sequencing</title><author xml:id="author-1"><persName><forename type="first">Jacek</forename><surname>Błażewicz</surname></persName><affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</affiliation></author><author xml:id="author-2"><persName><forename type="first">Piotr</forename><surname>Formanowicz</surname></persName><affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</affiliation></author><author xml:id="author-3"><persName><forename type="first">Frederic</forename><surname>Guinand</surname></persName><affiliation>LIH - Le Havre University, BP 540 76058 Le Havre cedex, France</affiliation></author><author xml:id="author-4"><persName><forename type="first">Marta</forename><surname>Kasprzak</surname></persName><affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</affiliation></author></analytic><monogr><title level="j">Bioinformatics</title><title level="j" type="abbrev">Bioinformatics</title><idno type="pISSN">1367-4803</idno><idno type="eISSN">1460-2059</idno><imprint><publisher>Oxford University Press</publisher><date type="published" when="2002-05"></date><biblScope unit="volume">18</biblScope><biblScope unit="issue">5</biblScope><biblScope unit="page" from="652">652</biblScope><biblScope unit="page" to="660">660</biblScope></imprint></monogr><idno type="istex">27558C0003C5AB845A99370A129A677797E4EC5F</idno><idno type="DOI">10.1093/bioinformatics/18.5.652</idno><idno type="PII">1460-2059</idno><idno type="local">180652</idno></biblStruct></sourceDesc></fileDesc><profileDesc><creation><date>2002</date></creation><langUsage><language ident="en">en</language></langUsage><abstract xml:lang="en"><p>Motivation: A new heuristic algorithm for solving DNA sequencing by hybridization problem with positive and negative errors. Results: A heuristic algorithm providing better solutions than algorithms known from the literature based on tabu search method. Contact: blazewic@sol.put.poznan.pl * To whom correspondence should be addressed.</p></abstract></profileDesc><revisionDesc><change when="2002-05">Published</change><change xml:id="refBibs-istex" who="#ISTEX-API" when="2016-10-14">References added</change></revisionDesc></teiHeader></istex:fulltextTEI><json:item><original>false</original><mimetype>text/plain</mimetype><extension>txt</extension><uri>https://api.istex.fr/document/27558C0003C5AB845A99370A129A677797E4EC5F/fulltext/txt</uri></json:item></fulltext><metadata><istex:metadataXml wicri:clean="corpus oup" wicri:toSee="no header"><istex:xmlDeclaration>version="1.0" encoding="US-ASCII"</istex:xmlDeclaration><istex:docType PUBLIC="-//NLM//DTD Journal Publishing DTD v2.3 20070202//EN" URI="journalpublishing.dtd" name="istex:docType"></istex:docType><istex:document><article xml:lang="en" article-type="other"><front><journal-meta><journal-id journal-id-type="hwp">bioinfo</journal-id><journal-id journal-id-type="nlm-ta">Bioinformatics</journal-id><journal-id journal-id-type="publisher-id">bioinformatics</journal-id><journal-title>Bioinformatics</journal-title><abbrev-journal-title abbrev-type="publisher">Bioinformatics</abbrev-journal-title><issn pub-type="ppub">1367-4803</issn><issn pub-type="epub">1460-2059</issn><publisher><publisher-name>Oxford University Press</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="other">180652</article-id><article-id pub-id-type="doi">10.1093/bioinformatics/18.5.652</article-id><article-id pub-id-type="pii">1460-2059</article-id><article-categories><subj-group subj-group-type="heading"><subject>Original Paper</subject></subj-group></article-categories><title-group><article-title>A heuristic managing errors for DNA sequencing</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Błażewicz</surname><given-names>Jacek</given-names></name><xref rid="AFF1">1</xref><xref rid="FN0">*</xref></contrib><contrib contrib-type="author"><name><surname>Formanowicz</surname><given-names>Piotr</given-names></name><xref rid="AFF1">1</xref></contrib><contrib contrib-type="author"><name><surname>Guinand</surname><given-names>Frederic</given-names></name><xref rid="AFF2">2</xref></contrib><contrib contrib-type="author"><name><surname>Kasprzak</surname><given-names>Marta</given-names></name><xref rid="AFF1">1</xref></contrib><aff id="AFF1"><label>1</label>Institute of Computing Science,
Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry,
Polish Academy of Sciences, 61-704 Poznań, Poland
</aff><aff id="AFF2"><label>2</label>LIH - Le Havre University, BP 540 76058 Le Havre cedex,
France
</aff></contrib-group><pub-date pub-type="ppub"><month>5</month><year>2002</year></pub-date><volume>18</volume><issue>5</issue><fpage>652</fpage><lpage>660</lpage><history><date date-type="accepted"><day>6</day><month>12</month><year>2001</year></date><date date-type="received"><day>13</day><month>7</month><year>2001</year></date><date date-type="rev-recd"><day>13</day><month>11</month><year>2001</year></date></history><permissions><copyright-statement>© Oxford University Press
2002</copyright-statement><copyright-year>2002</copyright-year></permissions><abstract xml:lang="en"><p>Motivation: A new heuristic algorithm for solving
DNA sequencing by hybridization problem with positive and
negative errors.</p><p>Results: A heuristic algorithm providing better solutions
than algorithms known from the literature based on tabu
search method.</p><p>Contact: <ext-link xlink:href="blazewic@sol.put.poznan.pl" ext-link-type="email">blazewic@sol.put.poznan.pl</ext-link></p><p><fn id="FN0" xml:lang="en"><label>*</label><p>To whom correspondence should be
addressed.</p></fn></p></abstract><custom-meta-wrap><custom-meta><meta-name>hwp-legacy-fpage</meta-name><meta-value>652</meta-value></custom-meta><custom-meta><meta-name>hwp-legacy-dochead</meta-name><meta-value>Original Paper</meta-value></custom-meta></custom-meta-wrap></article-meta></front></article></istex:document></istex:metadataXml><mods version="3.6"><titleInfo lang="en"><title>A heuristic managing errors for DNA sequencing</title></titleInfo><titleInfo type="alternative" lang="en" contentType="CDATA"><title>A heuristic managing errors for DNA sequencing</title></titleInfo><name type="personal"><namePart type="given">Jacek</namePart><namePart type="family">Błażewicz</namePart><affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Piotr</namePart><namePart type="family">Formanowicz</namePart><affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Frederic</namePart><namePart type="family">Guinand</namePart><affiliation>LIH - Le Havre University, BP 540 76058 Le Havre cedex, France</affiliation><role><roleTerm type="text">author</roleTerm></role></name><name type="personal"><namePart type="given">Marta</namePart><namePart type="family">Kasprzak</namePart><affiliation>Institute of Computing Science, Poznań University of Technology, 60-965 Poznań, and Institute of Bioorganic Chemistry, Polish Academy of Sciences, 61-704 Poznań, Poland</affiliation><role><roleTerm type="text">author</roleTerm></role></name><typeOfResource>text</typeOfResource><genre type="other" displayLabel="other"></genre><originInfo><publisher>Oxford University Press</publisher><dateIssued encoding="w3cdtf">2002-05</dateIssued><copyrightDate encoding="w3cdtf">2002</copyrightDate></originInfo><language><languageTerm type="code" authority="iso639-2b">eng</languageTerm><languageTerm type="code" authority="rfc3066">en</languageTerm></language><physicalDescription><internetMediaType>text/html</internetMediaType></physicalDescription><abstract lang="en">Motivation: A new heuristic algorithm for solving DNA sequencing by hybridization problem with positive and negative errors. Results: A heuristic algorithm providing better solutions than algorithms known from the literature based on tabu search method. Contact: blazewic@sol.put.poznan.pl * To whom correspondence should be addressed.</abstract><relatedItem type="host"><titleInfo><title>Bioinformatics</title></titleInfo><titleInfo type="abbreviated"><title>Bioinformatics</title></titleInfo><genre type="journal">journal</genre><identifier type="ISSN">1367-4803</identifier><identifier type="eISSN">1460-2059</identifier><identifier type="PublisherID">bioinformatics</identifier><identifier type="PublisherID-hwp">bioinfo</identifier><identifier type="PublisherID-nlm-ta">Bioinformatics</identifier><part><date>2002</date><detail type="volume"><caption>vol.</caption><number>18</number></detail><detail type="issue"><caption>no.</caption><number>5</number></detail><extent unit="pages"><start>652</start><end>660</end></extent></part></relatedItem><identifier type="istex">27558C0003C5AB845A99370A129A677797E4EC5F</identifier><identifier type="DOI">10.1093/bioinformatics/18.5.652</identifier><identifier type="PII">1460-2059</identifier><identifier type="local">180652</identifier><accessCondition type="use and reproduction" contentType="copyright">© Oxford University Press 2002</accessCondition><recordInfo><recordContentSource>OUP</recordContentSource></recordInfo></mods></metadata><enrichments><istex:catWosTEI uri="https://api.istex.fr/document/27558C0003C5AB845A99370A129A677797E4EC5F/enrichments/catWos"><teiHeader><profileDesc><textClass><classCode scheme="WOS">COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS</classCode><classCode scheme="WOS">MATHEMATICS, INTERDISCIPLINARY APPLICATIONS</classCode><classCode scheme="WOS">STATISTICS & PROBABILITY</classCode><classCode scheme="WOS">BIOCHEMICAL RESEARCH METHODS</classCode><classCode scheme="WOS">BIOTECHNOLOGY & APPLIED MICROBIOLOGY</classCode><classCode scheme="WOS">MATHEMATICAL & COMPUTATIONAL BIOLOGY</classCode></textClass></profileDesc></teiHeader></istex:catWosTEI><json:item><type>refBibs</type><uri>https://api.istex.fr/document/27558C0003C5AB845A99370A129A677797E4EC5F/enrichments/refBibs</uri></json:item></enrichments><serie></serie></istex></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/France/explor/LeHavreV1/Data/Istex/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000C23 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Istex/Corpus/biblio.hfd -nk 000C23 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/France
|area= LeHavreV1
|flux= Istex
|étape= Corpus
|type= RBID
|clé= ISTEX:27558C0003C5AB845A99370A129A677797E4EC5F
|texte= A heuristic managing errors for DNA sequencing
}}
| This area was generated with Dilib version V0.6.25. |  |