A unified phylogeny-based nomenclature for histone variants
Identifieur interne : 000E38 ( Ncbi/Checkpoint ); précédent : 000E37; suivant : 000E39A unified phylogeny-based nomenclature for histone variants
Auteurs : Paul B. Talbert [États-Unis] ; Kami Ahmad [États-Unis] ; Geneviève Almouzni [France] ; Juan Ausi [Canada] ; Frederic Berger [Singapour] ; Prem L. Bhalla [Australie] ; William M. Bonner [États-Unis] ; W Zacheus Cande [États-Unis] ; Brian P. Chadwick [États-Unis] ; Simon W L. Chan [États-Unis] ; George A M. Cross [États-Unis] ; Liwang Cui [États-Unis] ; Stefan I. Dimitrov [France] ; Detlef Doenecke [Allemagne] ; José M. Eirin-L Pez [Espagne] ; Martin A. Gorovsky [États-Unis] ; Sandra B. Hake [Allemagne] ; Barbara A. Hamkalo [États-Unis] ; Sarah Holec [Singapour] ; Steven E. Jacobsen [États-Unis] ; Kinga Kamieniarz [Allemagne] ; Saadi Khochbin [France] ; Andreas G. Ladurner [Allemagne] ; David Landsman [États-Unis] ; John A. Latham [États-Unis] ; Benjamin Loppin [France] ; Harmit S. Malik [États-Unis] ; William F. Marzluff [États-Unis] ; John R. Pehrson [États-Unis] ; Jan Postberg [Allemagne] ; Robert Schneider [Allemagne, France] ; Mohan B. Singh [Australie] ; M Mitchell Smith [États-Unis] ; Eric Thompson [Norvège] ; Maria-Elena Torres-Padilla [France] ; David John Tremethick [Australie] ; Bryan M. Turner [Royaume-Uni] ; Jakob Harm Waterborg [États-Unis] ; Heike Wollmann [Singapour] ; Ramesh Yelagandula [Singapour] ; Bing Zhu [République populaire de Chine] ; Steven Henikoff [États-Unis]Source :
- Epigenetics & Chromatin [ 1756-8935 ] ; 2012.
Abstract
Histone variants are non-allelic protein isoforms that play key roles in diversifying chromatin structure. The known number of such variants has greatly increased in recent years, but the lack of naming conventions for them has led to a variety of naming styles, multiple synonyms and misleading homographs that obscure variant relationships and complicate database searches. We propose here a unified nomenclature for variants of all five classes of histones that uses consistent but flexible naming conventions to produce names that are informative and readily searchable. The nomenclature builds on historical usage and incorporates phylogenetic relationships, which are strong predictors of structure and function. A key feature is the consistent use of punctuation to represent phylogenetic divergence, making explicit the relationships among variant subtypes that have previously been implicit or unclear. We recommend that by default new histone variants be named with organism-specific paralog-number suffixes that lack phylogenetic implication, while letter suffixes be reserved for structurally distinct clades of variants. For clarity and searchability, we encourage the use of descriptors that are separate from the phylogeny-based variant name to indicate developmental and other properties of variants that may be independent of structure.
Url:
DOI: 10.1186/1756-8935-5-7
PubMed: 22650316
PubMed Central: 3380720
Affiliations:
- Allemagne, Australie, Canada, Espagne, France, Norvège, Royaume-Uni, République populaire de Chine, Singapour, États-Unis
- Alsace (région administrative), Angleterre, Auvergne-Rhône-Alpes, Bade-Wurtemberg, Basse-Saxe, Bavière, District de Fribourg-en-Brisgau, District de Haute-Bavière, Grand Est, Midlands de l'Ouest, Pennsylvanie, Rhône-Alpes, Victoria (État), État de New York
- Birmingham, Fribourg-en-Brisgau, Grenoble, Göttingen, Melbourne, Munich, Strasbourg, University Park (Pennsylvanie)
- Université Louis-et-Maximilien de Munich, Université d'État de Pennsylvanie, Université de Birmingham, Université de Melbourne, Université de Strasbourg, Université nationale de Singapour
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<author><name sortKey="Thompson, Eric" sort="Thompson, Eric" uniqKey="Thompson E" first="Eric" last="Thompson">Eric Thompson</name>
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<author><name sortKey="Turner, Bryan M" sort="Turner, Bryan M" uniqKey="Turner B" first="Bryan M" last="Turner">Bryan M. Turner</name>
<affiliation wicri:level="4"><nlm:aff id="I33">College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK</nlm:aff>
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<author><name sortKey="Waterborg, Jakob Harm" sort="Waterborg, Jakob Harm" uniqKey="Waterborg J" first="Jakob Harm" last="Waterborg">Jakob Harm Waterborg</name>
<affiliation wicri:level="1"><nlm:aff id="I34">Cell Biology and Biophysics, School of Biological Sciences, University of Missouri-Kansas City, Kansas City, MO, 64110, USA</nlm:aff>
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<author><name sortKey="Wollmann, Heike" sort="Wollmann, Heike" uniqKey="Wollmann H" first="Heike" last="Wollmann">Heike Wollmann</name>
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<author><name sortKey="Yelagandula, Ramesh" sort="Yelagandula, Ramesh" uniqKey="Yelagandula R" first="Ramesh" last="Yelagandula">Ramesh Yelagandula</name>
<affiliation wicri:level="4"><nlm:aff id="I5">Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604, Singapore</nlm:aff>
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<author><name sortKey="Zhu, Bing" sort="Zhu, Bing" uniqKey="Zhu B" first="Bing" last="Zhu">Bing Zhu</name>
<affiliation wicri:level="1"><nlm:aff id="I35">Chromatin Lab, National Institute of Biological Sciences, Beijing, Beijing, 102206, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
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<affiliation wicri:level="1"><nlm:aff id="I1">Howard Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA</nlm:aff>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">A unified phylogeny-based nomenclature for histone variants</title>
<author><name sortKey="Talbert, Paul B" sort="Talbert, Paul B" uniqKey="Talbert P" first="Paul B" last="Talbert">Paul B. Talbert</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Howard Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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<author><name sortKey="Ahmad, Kami" sort="Ahmad, Kami" uniqKey="Ahmad K" first="Kami" last="Ahmad">Kami Ahmad</name>
<affiliation wicri:level="1"><nlm:aff id="I2">Department of BCMP, Harvard Medical School, Boston, MA, 02115, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of BCMP, Harvard Medical School, Boston, MA, 02115</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Almouzni, Genevieve" sort="Almouzni, Genevieve" uniqKey="Almouzni G" first="Geneviève" last="Almouzni">Geneviève Almouzni</name>
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<country xml:lang="fr">France</country>
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<author><name sortKey="Ausi, Juan" sort="Ausi, Juan" uniqKey="Ausi J" first="Juan" last="Ausi">Juan Ausi</name>
<affiliation wicri:level="1"><nlm:aff id="I4">Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 3P6, Canada</nlm:aff>
<country xml:lang="fr">Canada</country>
<wicri:regionArea>Department of Biochemistry and Microbiology, University of Victoria, Victoria, BC, V8W 3P6</wicri:regionArea>
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<author><name sortKey="Berger, Frederic" sort="Berger, Frederic" uniqKey="Berger F" first="Frederic" last="Berger">Frederic Berger</name>
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<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604</wicri:regionArea>
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<author><name sortKey="Bhalla, Prem L" sort="Bhalla, Prem L" uniqKey="Bhalla P" first="Prem L" last="Bhalla">Prem L. Bhalla</name>
<affiliation wicri:level="4"><nlm:aff id="I6">Plant Molecular Biology and Biotechnology Group, Melbourne School of Land and Environment, The University of Melbourne, Parkville, VIC, 3010, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Plant Molecular Biology and Biotechnology Group, Melbourne School of Land and Environment, The University of Melbourne, Parkville, VIC, 3010</wicri:regionArea>
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<author><name sortKey="Bonner, William M" sort="Bonner, William M" uniqKey="Bonner W" first="William M" last="Bonner">William M. Bonner</name>
<affiliation wicri:level="1"><nlm:aff id="I7">Laboratory of Molecular Pharmacology, CCR, NCI, NIH, Bethesda, MD, 20892, USA</nlm:aff>
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<author><name sortKey="Cande, W Zacheus" sort="Cande, W Zacheus" uniqKey="Cande W" first="W Zacheus" last="Cande">W Zacheus Cande</name>
<affiliation wicri:level="1"><nlm:aff id="I8">Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720-3200, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Molecular and Cell Biology, University of California, Berkeley, CA, 94720-3200</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Chadwick, Brian P" sort="Chadwick, Brian P" uniqKey="Chadwick B" first="Brian P" last="Chadwick">Brian P. Chadwick</name>
<affiliation wicri:level="1"><nlm:aff id="I9">Department of Biological Science, Florida State University, Tallahassee, FL, 32306-4295, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
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</affiliation>
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<author><name sortKey="Chan, Simon W L" sort="Chan, Simon W L" uniqKey="Chan S" first="Simon W L" last="Chan">Simon W L. Chan</name>
<affiliation wicri:level="1"><nlm:aff id="I10">Department of Plant Biology, UC Davis / HHMI, Davis, CA, 95616, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Plant Biology, UC Davis / HHMI, Davis, CA, 95616</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Cross, George A M" sort="Cross, George A M" uniqKey="Cross G" first="George A M" last="Cross">George A M. Cross</name>
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<author><name sortKey="Cui, Liwang" sort="Cui, Liwang" uniqKey="Cui L" first="Liwang" last="Cui">Liwang Cui</name>
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<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Entomology, Pennsylvania State University, University Park, PA, 16802</wicri:regionArea>
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</affiliation>
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<author><name sortKey="Dimitrov, Stefan I" sort="Dimitrov, Stefan I" uniqKey="Dimitrov S" first="Stefan I" last="Dimitrov">Stefan I. Dimitrov</name>
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<country xml:lang="fr">France</country>
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<author><name sortKey="Doenecke, Detlef" sort="Doenecke, Detlef" uniqKey="Doenecke D" first="Detlef" last="Doenecke">Detlef Doenecke</name>
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<country xml:lang="fr">Allemagne</country>
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<author><name sortKey="Eirin L Pez, Jose M" sort="Eirin L Pez, Jose M" uniqKey="Eirin L Pez J" first="José M" last="Eirin-L Pez">José M. Eirin-L Pez</name>
<affiliation wicri:level="1"><nlm:aff id="I15">Department of Cellular and Molecular Biology, University of A Coruna, A Coruna, E15071, Spain</nlm:aff>
<country xml:lang="fr">Espagne</country>
<wicri:regionArea>Department of Cellular and Molecular Biology, University of A Coruna, A Coruna, E15071</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Gorovsky, Martin A" sort="Gorovsky, Martin A" uniqKey="Gorovsky M" first="Martin A" last="Gorovsky">Martin A. Gorovsky</name>
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<country xml:lang="fr">États-Unis</country>
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</placeName>
</affiliation>
</author>
<author><name sortKey="Hake, Sandra B" sort="Hake, Sandra B" uniqKey="Hake S" first="Sandra B" last="Hake">Sandra B. Hake</name>
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<author><name sortKey="Hamkalo, Barbara A" sort="Hamkalo, Barbara A" uniqKey="Hamkalo B" first="Barbara A" last="Hamkalo">Barbara A. Hamkalo</name>
<affiliation wicri:level="1"><nlm:aff id="I18">Department of Molecular Biology and Biochemistry, University of CA, Irvine, CA, 92697, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Molecular Biology and Biochemistry, University of CA, Irvine, CA, 92697</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Holec, Sarah" sort="Holec, Sarah" uniqKey="Holec S" first="Sarah" last="Holec">Sarah Holec</name>
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<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Jacobsen, Steven E" sort="Jacobsen, Steven E" uniqKey="Jacobsen S" first="Steven E" last="Jacobsen">Steven E. Jacobsen</name>
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<author><name sortKey="Kamieniarz, Kinga" sort="Kamieniarz, Kinga" uniqKey="Kamieniarz K" first="Kinga" last="Kamieniarz">Kinga Kamieniarz</name>
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</affiliation>
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<author><name sortKey="Khochbin, Saadi" sort="Khochbin, Saadi" uniqKey="Khochbin S" first="Saadi" last="Khochbin">Saadi Khochbin</name>
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<affiliation wicri:level="4"><nlm:aff id="I22">Department of Physiological Chemistry, Butenandt Institute and Biomedical Center, Ludwig Maximilians University of Munich, Munich, 81377, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
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<region type="district" nuts="2">District de Haute-Bavière</region>
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</placeName>
<orgName type="university">Université Louis-et-Maximilien de Munich</orgName>
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</author>
<author><name sortKey="Landsman, David" sort="Landsman, David" uniqKey="Landsman D" first="David" last="Landsman">David Landsman</name>
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<author><name sortKey="Latham, John A" sort="Latham, John A" uniqKey="Latham J" first="John A" last="Latham">John A. Latham</name>
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<country xml:lang="fr">États-Unis</country>
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</affiliation>
</author>
<author><name sortKey="Loppin, Benjamin" sort="Loppin, Benjamin" uniqKey="Loppin B" first="Benjamin" last="Loppin">Benjamin Loppin</name>
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<country xml:lang="fr">France</country>
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<author><name sortKey="Malik, Harmit S" sort="Malik, Harmit S" uniqKey="Malik H" first="Harmit S" last="Malik">Harmit S. Malik</name>
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<country xml:lang="fr">États-Unis</country>
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</author>
<author><name sortKey="Marzluff, William F" sort="Marzluff, William F" uniqKey="Marzluff W" first="William F" last="Marzluff">William F. Marzluff</name>
<affiliation wicri:level="1"><nlm:aff id="I25">Program in Molecular Biology and Biotechnology, University of North Carolina, Chapel Hill, NC, 27599, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Program in Molecular Biology and Biotechnology, University of North Carolina, Chapel Hill, NC, 27599</wicri:regionArea>
<wicri:noRegion>27599</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Pehrson, John R" sort="Pehrson, John R" uniqKey="Pehrson J" first="John R" last="Pehrson">John R. Pehrson</name>
<affiliation wicri:level="1"><nlm:aff id="I26">Department of Animal Biology, University of Pennsylvania, Philadelphia, PA, 19104-6046, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Animal Biology, University of Pennsylvania, Philadelphia, PA, 19104-6046</wicri:regionArea>
<wicri:noRegion>19104-6046</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Postberg, Jan" sort="Postberg, Jan" uniqKey="Postberg J" first="Jan" last="Postberg">Jan Postberg</name>
<affiliation wicri:level="1"><nlm:aff id="I27">HELIOS Medical Centre Wuppertal, Paediatrics Centre, Witten/Herdecke University, Wuppertal, D-42283, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>HELIOS Medical Centre Wuppertal, Paediatrics Centre, Witten/Herdecke University, Wuppertal, D-42283</wicri:regionArea>
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<wicri:noRegion>42283</wicri:noRegion>
<wicri:noRegion>D-42283</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Schneider, Robert" sort="Schneider, Robert" uniqKey="Schneider R" first="Robert" last="Schneider">Robert Schneider</name>
<affiliation wicri:level="3"><nlm:aff id="I20">Max Planck Institute for Immunbiology and Epigenetics, Freiburg, 79108, Germany</nlm:aff>
<country xml:lang="fr">Allemagne</country>
<wicri:regionArea>Max Planck Institute for Immunbiology and Epigenetics, Freiburg, 79108</wicri:regionArea>
<placeName><region type="land" nuts="1">Bade-Wurtemberg</region>
<region type="district" nuts="2">District de Fribourg-en-Brisgau</region>
<settlement type="city">Fribourg-en-Brisgau</settlement>
</placeName>
</affiliation>
<affiliation wicri:level="1"><nlm:aff id="I28">Institut de Genetique et Biologie Moleculaire et Cellulaire, Illkirch, 67404, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Institut de Genetique et Biologie Moleculaire et Cellulaire, Illkirch, 67404</wicri:regionArea>
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</affiliation>
</author>
<author><name sortKey="Singh, Mohan B" sort="Singh, Mohan B" uniqKey="Singh M" first="Mohan B" last="Singh">Mohan B. Singh</name>
<affiliation wicri:level="4"><nlm:aff id="I6">Plant Molecular Biology and Biotechnology Group, Melbourne School of Land and Environment, The University of Melbourne, Parkville, VIC, 3010, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>Plant Molecular Biology and Biotechnology Group, Melbourne School of Land and Environment, The University of Melbourne, Parkville, VIC, 3010</wicri:regionArea>
<orgName type="university">Université de Melbourne</orgName>
<placeName><settlement type="city">Melbourne</settlement>
<region type="état">Victoria (État)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Smith, M Mitchell" sort="Smith, M Mitchell" uniqKey="Smith M" first="M Mitchell" last="Smith">M Mitchell Smith</name>
<affiliation wicri:level="1"><nlm:aff id="I29">Department of Microbiology, Immunology, and Cancer Biology, University of Virginia, Charlottesville, VA, 22908, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Department of Microbiology, Immunology, and Cancer Biology, University of Virginia, Charlottesville, VA, 22908</wicri:regionArea>
<wicri:noRegion>22908</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Thompson, Eric" sort="Thompson, Eric" uniqKey="Thompson E" first="Eric" last="Thompson">Eric Thompson</name>
<affiliation wicri:level="1"><nlm:aff id="I30">Sars International Center for Marine Molecular Biology and Department of Biology, University of Bergen, Bergen, N-5008, Norway</nlm:aff>
<country xml:lang="fr">Norvège</country>
<wicri:regionArea>Sars International Center for Marine Molecular Biology and Department of Biology, University of Bergen, Bergen, N-5008</wicri:regionArea>
<wicri:noRegion>N-5008</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Torres Padilla, Maria Elena" sort="Torres Padilla, Maria Elena" uniqKey="Torres Padilla M" first="Maria-Elena" last="Torres-Padilla">Maria-Elena Torres-Padilla</name>
<affiliation wicri:level="4"><nlm:aff id="I31">Stem Cells and Developmental Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM U964, Universite de Strasbourg, Illkirch, CU de Strasbourg, F-67404, France</nlm:aff>
<country xml:lang="fr">France</country>
<wicri:regionArea>Stem Cells and Developmental Biology, Institut de Génétique et de Biologie Moléculaire et Cellulaire, CNRS/INSERM U964, Universite de Strasbourg, Illkirch, CU de Strasbourg, F-67404</wicri:regionArea>
<wicri:noRegion>67404</wicri:noRegion>
<orgName type="university">Université de Strasbourg</orgName>
<placeName><settlement type="city">Strasbourg</settlement>
<region type="region" nuts="2">Grand Est</region>
<region type="old region" nuts="2">Alsace (région administrative)</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Tremethick, David John" sort="Tremethick, David John" uniqKey="Tremethick D" first="David John" last="Tremethick">David John Tremethick</name>
<affiliation wicri:level="1"><nlm:aff id="I32">The John Curtin School of Medical Research, Genome Biology Department, The Australian National University, Canberra, ACT 2601, Australia</nlm:aff>
<country xml:lang="fr">Australie</country>
<wicri:regionArea>The John Curtin School of Medical Research, Genome Biology Department, The Australian National University, Canberra, ACT 2601</wicri:regionArea>
<wicri:noRegion>ACT 2601</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Turner, Bryan M" sort="Turner, Bryan M" uniqKey="Turner B" first="Bryan M" last="Turner">Bryan M. Turner</name>
<affiliation wicri:level="4"><nlm:aff id="I33">College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK</nlm:aff>
<country xml:lang="fr">Royaume-Uni</country>
<wicri:regionArea>College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT</wicri:regionArea>
<orgName type="university">Université de Birmingham</orgName>
<placeName><settlement type="city">Birmingham</settlement>
<region type="country">Angleterre</region>
<region type="région" nuts="1">Midlands de l'Ouest</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Waterborg, Jakob Harm" sort="Waterborg, Jakob Harm" uniqKey="Waterborg J" first="Jakob Harm" last="Waterborg">Jakob Harm Waterborg</name>
<affiliation wicri:level="1"><nlm:aff id="I34">Cell Biology and Biophysics, School of Biological Sciences, University of Missouri-Kansas City, Kansas City, MO, 64110, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Cell Biology and Biophysics, School of Biological Sciences, University of Missouri-Kansas City, Kansas City, MO, 64110</wicri:regionArea>
<wicri:noRegion>64110</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wollmann, Heike" sort="Wollmann, Heike" uniqKey="Wollmann H" first="Heike" last="Wollmann">Heike Wollmann</name>
<affiliation wicri:level="4"><nlm:aff id="I5">Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604</wicri:regionArea>
<orgName type="university">Université nationale de Singapour</orgName>
</affiliation>
</author>
<author><name sortKey="Yelagandula, Ramesh" sort="Yelagandula, Ramesh" uniqKey="Yelagandula R" first="Ramesh" last="Yelagandula">Ramesh Yelagandula</name>
<affiliation wicri:level="4"><nlm:aff id="I5">Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604, Singapore</nlm:aff>
<country xml:lang="fr">Singapour</country>
<wicri:regionArea>Temasek Lifesciences Laboratory, 1 Research Link, National University of Singapore, Singapore, 117604</wicri:regionArea>
<orgName type="university">Université nationale de Singapour</orgName>
</affiliation>
</author>
<author><name sortKey="Zhu, Bing" sort="Zhu, Bing" uniqKey="Zhu B" first="Bing" last="Zhu">Bing Zhu</name>
<affiliation wicri:level="1"><nlm:aff id="I35">Chromatin Lab, National Institute of Biological Sciences, Beijing, Beijing, 102206, China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Chromatin Lab, National Institute of Biological Sciences, Beijing, Beijing, 102206</wicri:regionArea>
<wicri:noRegion>102206</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Henikoff, Steven" sort="Henikoff, Steven" uniqKey="Henikoff S" first="Steven" last="Henikoff">Steven Henikoff</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Howard Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109, USA</nlm:aff>
<country xml:lang="fr">États-Unis</country>
<wicri:regionArea>Howard Hughes Medical Institute, Basic Sciences Division, Fred Hutchinson Cancer Research Center, Seattle, WA, 98109</wicri:regionArea>
<wicri:noRegion>98109</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">Epigenetics & Chromatin</title>
<idno type="eISSN">1756-8935</idno>
<imprint><date when="2012">2012</date>
</imprint>
</series>
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</sourceDesc>
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<profileDesc><textClass></textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en"><p>Histone variants are non-allelic protein isoforms that play key roles in diversifying chromatin structure. The known number of such variants has greatly increased in recent years, but the lack of naming conventions for them has led to a variety of naming styles, multiple synonyms and misleading homographs that obscure variant relationships and complicate database searches. We propose here a unified nomenclature for variants of all five classes of histones that uses consistent but flexible naming conventions to produce names that are informative and readily searchable. The nomenclature builds on historical usage and incorporates phylogenetic relationships, which are strong predictors of structure and function. A key feature is the consistent use of punctuation to represent phylogenetic divergence, making explicit the relationships among variant subtypes that have previously been implicit or unclear. We recommend that by default new histone variants be named with organism-specific paralog-number suffixes that lack phylogenetic implication, while letter suffixes be reserved for structurally distinct clades of variants. For clarity and searchability, we encourage the use of descriptors that are separate from the phylogeny-based variant name to indicate developmental and other properties of variants that may be independent of structure.</p>
</div>
</front>
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<biblStruct><analytic><author><name sortKey="Parseghian, Mh" uniqKey="Parseghian M">MH Parseghian</name>
</author>
<author><name sortKey="Henschen, Ah" uniqKey="Henschen A">AH Henschen</name>
</author>
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</author>
<author><name sortKey="Hamkalo, Ba" uniqKey="Hamkalo B">BA Hamkalo</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Albig, W" uniqKey="Albig W">W Albig</name>
</author>
<author><name sortKey="Kardalinou, E" uniqKey="Kardalinou E">E Kardalinou</name>
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</author>
<author><name sortKey="Doenecke, D" uniqKey="Doenecke D">D Doenecke</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Albig, W" uniqKey="Albig W">W Albig</name>
</author>
<author><name sortKey="Drabent, B" uniqKey="Drabent B">B Drabent</name>
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</author>
<author><name sortKey="Doenecke, D" uniqKey="Doenecke D">D Doenecke</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Albig, W" uniqKey="Albig W">W Albig</name>
</author>
<author><name sortKey="Kioschis, P" uniqKey="Kioschis P">P Kioschis</name>
</author>
<author><name sortKey="Poustka, A" uniqKey="Poustka A">A Poustka</name>
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</author>
<author><name sortKey="Doenecke, D" uniqKey="Doenecke D">D Doenecke</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Peretti, M" uniqKey="Peretti M">M Peretti</name>
</author>
<author><name sortKey="Khochbin, S" uniqKey="Khochbin S">S Khochbin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Brocard, Mp" uniqKey="Brocard M">MP Brocard</name>
</author>
<author><name sortKey="Triebe, S" uniqKey="Triebe S">S Triebe</name>
</author>
<author><name sortKey="Peretti, M" uniqKey="Peretti M">M Peretti</name>
</author>
<author><name sortKey="Doenecke, D" uniqKey="Doenecke D">D Doenecke</name>
</author>
<author><name sortKey="Khochbin, S" uniqKey="Khochbin S">S Khochbin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Eirin L Pez, Jm" uniqKey="Eirin L Pez J">JM Eirín-López</name>
</author>
<author><name sortKey="Gonzalez Tiz N, Am" uniqKey="Gonzalez Tiz N A">AM González-Tizón</name>
</author>
<author><name sortKey="Martinez, A" uniqKey="Martinez A">A Martinez</name>
</author>
<author><name sortKey="Mendez, J" uniqKey="Mendez J">J Méndez</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gonzalez Romero, R" uniqKey="Gonzalez Romero R">R González-Romero</name>
</author>
<author><name sortKey="Ausi, J" uniqKey="Ausi J">J Ausió</name>
</author>
<author><name sortKey="Mendez, J" uniqKey="Mendez J">J Méndez</name>
</author>
<author><name sortKey="Eirin L Pez, Jm" uniqKey="Eirin L Pez J">JM Eirín-López</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Gonzalez Romero, R" uniqKey="Gonzalez Romero R">R González-Romero</name>
</author>
<author><name sortKey="Ausi, J" uniqKey="Ausi J">J Ausió</name>
</author>
<author><name sortKey="Mendez, J" uniqKey="Mendez J">J Méndez</name>
</author>
<author><name sortKey="Eirin L Pez, Jm" uniqKey="Eirin L Pez J">JM Eirín-López</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Garel, A" uniqKey="Garel A">A Garel</name>
</author>
<author><name sortKey="Mazen, A" uniqKey="Mazen A">A Mazen</name>
</author>
<author><name sortKey="Champagne, M" uniqKey="Champagne M">M Champagne</name>
</author>
<author><name sortKey="Sautiere, P" uniqKey="Sautiere P">P Sautiere</name>
</author>
<author><name sortKey="Kmiecik, D" uniqKey="Kmiecik D">D Kmiecik</name>
</author>
<author><name sortKey="Loy, O" uniqKey="Loy O">O Loy</name>
</author>
<author><name sortKey="Biserte, G" uniqKey="Biserte G">G Biserte</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Khochbin, S" uniqKey="Khochbin S">S Khochbin</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Smith, Bj" uniqKey="Smith B">BJ Smith</name>
</author>
<author><name sortKey="Walker, Jm" uniqKey="Walker J">JM Walker</name>
</author>
<author><name sortKey="Johns, Ew" uniqKey="Johns E">EW Johns</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Lieber, T" uniqKey="Lieber T">T Lieber</name>
</author>
<author><name sortKey="Angerer, Lm" uniqKey="Angerer L">LM Angerer</name>
</author>
<author><name sortKey="Angerer, Rc" uniqKey="Angerer R">RC Angerer</name>
</author>
<author><name sortKey="Childs, G" uniqKey="Childs G">G Childs</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Ohe, Y" uniqKey="Ohe Y">Y Ohe</name>
</author>
<author><name sortKey="Hayashi, H" uniqKey="Hayashi H">H Hayashi</name>
</author>
<author><name sortKey="Iwai, K" uniqKey="Iwai K">K Iwai</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Parseghian, Mh" uniqKey="Parseghian M">MH Parseghian</name>
</author>
<author><name sortKey="Clark, Rf" uniqKey="Clark R">RF Clark</name>
</author>
<author><name sortKey="Hauser, Lj" uniqKey="Hauser L">LJ Hauser</name>
</author>
<author><name sortKey="Dvorkin, N" uniqKey="Dvorkin N">N Dvorkin</name>
</author>
<author><name sortKey="Harris, Da" uniqKey="Harris D">DA Harris</name>
</author>
<author><name sortKey="Hamkalo, Ba" uniqKey="Hamkalo B">BA Hamkalo</name>
</author>
</analytic>
</biblStruct>
<biblStruct><analytic><author><name sortKey="Tanaka, M" uniqKey="Tanaka M">M Tanaka</name>
</author>
<author><name sortKey="Hennebold, Jd" uniqKey="Hennebold J">JD Hennebold</name>
</author>
<author><name sortKey="Macfarlane, J" uniqKey="Macfarlane J">J Macfarlane</name>
</author>
<author><name sortKey="Adashi, Ey" uniqKey="Adashi E">EY Adashi</name>
</author>
</analytic>
</biblStruct>
</listBibl>
</div1>
</back>
</TEI>
<affiliations><list><country><li>Allemagne</li>
<li>Australie</li>
<li>Canada</li>
<li>Espagne</li>
<li>France</li>
<li>Norvège</li>
<li>Royaume-Uni</li>
<li>République populaire de Chine</li>
<li>Singapour</li>
<li>États-Unis</li>
</country>
<region><li>Alsace (région administrative)</li>
<li>Angleterre</li>
<li>Auvergne-Rhône-Alpes</li>
<li>Bade-Wurtemberg</li>
<li>Basse-Saxe</li>
<li>Bavière</li>
<li>District de Fribourg-en-Brisgau</li>
<li>District de Haute-Bavière</li>
<li>Grand Est</li>
<li>Midlands de l'Ouest</li>
<li>Pennsylvanie</li>
<li>Rhône-Alpes</li>
<li>Victoria (État)</li>
<li>État de New York</li>
</region>
<settlement><li>Birmingham</li>
<li>Fribourg-en-Brisgau</li>
<li>Grenoble</li>
<li>Göttingen</li>
<li>Melbourne</li>
<li>Munich</li>
<li>Strasbourg</li>
<li>University Park (Pennsylvanie)</li>
</settlement>
<orgName><li>Université Louis-et-Maximilien de Munich</li>
<li>Université d'État de Pennsylvanie</li>
<li>Université de Birmingham</li>
<li>Université de Melbourne</li>
<li>Université de Strasbourg</li>
<li>Université nationale de Singapour</li>
</orgName>
</list>
<tree><country name="États-Unis"><noRegion><name sortKey="Talbert, Paul B" sort="Talbert, Paul B" uniqKey="Talbert P" first="Paul B" last="Talbert">Paul B. Talbert</name>
</noRegion>
<name sortKey="Ahmad, Kami" sort="Ahmad, Kami" uniqKey="Ahmad K" first="Kami" last="Ahmad">Kami Ahmad</name>
<name sortKey="Bonner, William M" sort="Bonner, William M" uniqKey="Bonner W" first="William M" last="Bonner">William M. Bonner</name>
<name sortKey="Cande, W Zacheus" sort="Cande, W Zacheus" uniqKey="Cande W" first="W Zacheus" last="Cande">W Zacheus Cande</name>
<name sortKey="Chadwick, Brian P" sort="Chadwick, Brian P" uniqKey="Chadwick B" first="Brian P" last="Chadwick">Brian P. Chadwick</name>
<name sortKey="Chan, Simon W L" sort="Chan, Simon W L" uniqKey="Chan S" first="Simon W L" last="Chan">Simon W L. Chan</name>
<name sortKey="Cross, George A M" sort="Cross, George A M" uniqKey="Cross G" first="George A M" last="Cross">George A M. Cross</name>
<name sortKey="Cui, Liwang" sort="Cui, Liwang" uniqKey="Cui L" first="Liwang" last="Cui">Liwang Cui</name>
<name sortKey="Gorovsky, Martin A" sort="Gorovsky, Martin A" uniqKey="Gorovsky M" first="Martin A" last="Gorovsky">Martin A. Gorovsky</name>
<name sortKey="Hamkalo, Barbara A" sort="Hamkalo, Barbara A" uniqKey="Hamkalo B" first="Barbara A" last="Hamkalo">Barbara A. Hamkalo</name>
<name sortKey="Henikoff, Steven" sort="Henikoff, Steven" uniqKey="Henikoff S" first="Steven" last="Henikoff">Steven Henikoff</name>
<name sortKey="Jacobsen, Steven E" sort="Jacobsen, Steven E" uniqKey="Jacobsen S" first="Steven E" last="Jacobsen">Steven E. Jacobsen</name>
<name sortKey="Landsman, David" sort="Landsman, David" uniqKey="Landsman D" first="David" last="Landsman">David Landsman</name>
<name sortKey="Latham, John A" sort="Latham, John A" uniqKey="Latham J" first="John A" last="Latham">John A. Latham</name>
<name sortKey="Malik, Harmit S" sort="Malik, Harmit S" uniqKey="Malik H" first="Harmit S" last="Malik">Harmit S. Malik</name>
<name sortKey="Marzluff, William F" sort="Marzluff, William F" uniqKey="Marzluff W" first="William F" last="Marzluff">William F. Marzluff</name>
<name sortKey="Pehrson, John R" sort="Pehrson, John R" uniqKey="Pehrson J" first="John R" last="Pehrson">John R. Pehrson</name>
<name sortKey="Smith, M Mitchell" sort="Smith, M Mitchell" uniqKey="Smith M" first="M Mitchell" last="Smith">M Mitchell Smith</name>
<name sortKey="Waterborg, Jakob Harm" sort="Waterborg, Jakob Harm" uniqKey="Waterborg J" first="Jakob Harm" last="Waterborg">Jakob Harm Waterborg</name>
</country>
<country name="France"><noRegion><name sortKey="Almouzni, Genevieve" sort="Almouzni, Genevieve" uniqKey="Almouzni G" first="Geneviève" last="Almouzni">Geneviève Almouzni</name>
</noRegion>
<name sortKey="Dimitrov, Stefan I" sort="Dimitrov, Stefan I" uniqKey="Dimitrov S" first="Stefan I" last="Dimitrov">Stefan I. Dimitrov</name>
<name sortKey="Khochbin, Saadi" sort="Khochbin, Saadi" uniqKey="Khochbin S" first="Saadi" last="Khochbin">Saadi Khochbin</name>
<name sortKey="Loppin, Benjamin" sort="Loppin, Benjamin" uniqKey="Loppin B" first="Benjamin" last="Loppin">Benjamin Loppin</name>
<name sortKey="Schneider, Robert" sort="Schneider, Robert" uniqKey="Schneider R" first="Robert" last="Schneider">Robert Schneider</name>
<name sortKey="Torres Padilla, Maria Elena" sort="Torres Padilla, Maria Elena" uniqKey="Torres Padilla M" first="Maria-Elena" last="Torres-Padilla">Maria-Elena Torres-Padilla</name>
</country>
<country name="Canada"><noRegion><name sortKey="Ausi, Juan" sort="Ausi, Juan" uniqKey="Ausi J" first="Juan" last="Ausi">Juan Ausi</name>
</noRegion>
</country>
<country name="Singapour"><noRegion><name sortKey="Berger, Frederic" sort="Berger, Frederic" uniqKey="Berger F" first="Frederic" last="Berger">Frederic Berger</name>
</noRegion>
<name sortKey="Holec, Sarah" sort="Holec, Sarah" uniqKey="Holec S" first="Sarah" last="Holec">Sarah Holec</name>
<name sortKey="Wollmann, Heike" sort="Wollmann, Heike" uniqKey="Wollmann H" first="Heike" last="Wollmann">Heike Wollmann</name>
<name sortKey="Yelagandula, Ramesh" sort="Yelagandula, Ramesh" uniqKey="Yelagandula R" first="Ramesh" last="Yelagandula">Ramesh Yelagandula</name>
</country>
<country name="Australie"><region name="Victoria (État)"><name sortKey="Bhalla, Prem L" sort="Bhalla, Prem L" uniqKey="Bhalla P" first="Prem L" last="Bhalla">Prem L. Bhalla</name>
</region>
<name sortKey="Singh, Mohan B" sort="Singh, Mohan B" uniqKey="Singh M" first="Mohan B" last="Singh">Mohan B. Singh</name>
<name sortKey="Tremethick, David John" sort="Tremethick, David John" uniqKey="Tremethick D" first="David John" last="Tremethick">David John Tremethick</name>
</country>
<country name="Allemagne"><region name="Basse-Saxe"><name sortKey="Doenecke, Detlef" sort="Doenecke, Detlef" uniqKey="Doenecke D" first="Detlef" last="Doenecke">Detlef Doenecke</name>
</region>
<name sortKey="Hake, Sandra B" sort="Hake, Sandra B" uniqKey="Hake S" first="Sandra B" last="Hake">Sandra B. Hake</name>
<name sortKey="Kamieniarz, Kinga" sort="Kamieniarz, Kinga" uniqKey="Kamieniarz K" first="Kinga" last="Kamieniarz">Kinga Kamieniarz</name>
<name sortKey="Ladurner, Andreas G" sort="Ladurner, Andreas G" uniqKey="Ladurner A" first="Andreas G" last="Ladurner">Andreas G. Ladurner</name>
<name sortKey="Postberg, Jan" sort="Postberg, Jan" uniqKey="Postberg J" first="Jan" last="Postberg">Jan Postberg</name>
<name sortKey="Schneider, Robert" sort="Schneider, Robert" uniqKey="Schneider R" first="Robert" last="Schneider">Robert Schneider</name>
</country>
<country name="Espagne"><noRegion><name sortKey="Eirin L Pez, Jose M" sort="Eirin L Pez, Jose M" uniqKey="Eirin L Pez J" first="José M" last="Eirin-L Pez">José M. Eirin-L Pez</name>
</noRegion>
</country>
<country name="Norvège"><noRegion><name sortKey="Thompson, Eric" sort="Thompson, Eric" uniqKey="Thompson E" first="Eric" last="Thompson">Eric Thompson</name>
</noRegion>
</country>
<country name="Royaume-Uni"><region name="Angleterre"><name sortKey="Turner, Bryan M" sort="Turner, Bryan M" uniqKey="Turner B" first="Bryan M" last="Turner">Bryan M. Turner</name>
</region>
</country>
<country name="République populaire de Chine"><noRegion><name sortKey="Zhu, Bing" sort="Zhu, Bing" uniqKey="Zhu B" first="Bing" last="Zhu">Bing Zhu</name>
</noRegion>
</country>
</tree>
</affiliations>
</record>
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