Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
Identifieur interne : 000811 ( Ncbi/Checkpoint ); précédent : 000810; suivant : 000812Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
Auteurs : Benoît Remenant [France] ; Bénédicte Coupat-Goutaland [France] ; Alice Guidot [France] ; Gilles Cellier [France] ; Emmanuel Wicker [France] ; Caitilyn Allen [États-Unis] ; Mark Fegan [Australie] ; Olivier Pruvost [France] ; Mounira Elbaz [France] ; Alexandra Calteau [France] ; Gregory Salvignol [France] ; Damien Mornico [France] ; Sophie Mangenot [France] ; Valérie Barbe [France] ; Claudine Médigue [France] ; Philippe Prior [France]Source :
- BMC Genomics [ 1471-2164 ] ; 2010.
Abstract
The
The genomes of three tomato bacterial wilt pathogens, CFBP2957 (phy. IIA), CMR15 (phy. III) and PSI07 (phy. IV) were sequenced and manually annotated. These genomes were compared with those of three previously sequenced
Comparative analysis of genome sequences and gene content confirmed the differentiation of
Url:
DOI: 10.1186/1471-2164-11-379
PubMed: 20550686
PubMed Central: 2900269
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream Pmc, to step Corpus: 002286
- to stream Pmc, to step Curation: 002136
- to stream Pmc, to step Checkpoint: 002578
- to stream Ncbi, to step Merge: 000811
- to stream Ncbi, to step Curation: 000811
Links to Exploration step
PMC:2900269Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genomes of three tomato pathogens within the <italic>Ralstonia solanacearum </italic>species complex reveal significant evolutionary divergence</title><author><name sortKey="Remenant, Benoit" sort="Remenant, Benoit" uniqKey="Remenant B" first="Benoît" last="Remenant">Benoît Remenant</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author><author><name sortKey="Coupat Goutaland, Benedicte" sort="Coupat Goutaland, Benedicte" uniqKey="Coupat Goutaland B" first="Bénédicte" last="Coupat-Goutaland">Bénédicte Coupat-Goutaland</name><affiliation wicri:level="1"><nlm:aff id="I2">Université de Lyon, Unité Mixte de Recherche, Centre National de la Recherche Scientifique, UMR CNRS 5557 Ecologie Microbienne, IFR41 Bio Environnement et Santé, Université Lyon I, Villeurbanne cedex F-69622, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Université de Lyon, Unité Mixte de Recherche, Centre National de la Recherche Scientifique, UMR CNRS 5557 Ecologie Microbienne, IFR41 Bio Environnement et Santé, Université Lyon I, Villeurbanne cedex F-69622</wicri:regionArea><wicri:noRegion>69622</wicri:noRegion><wicri:noRegion>69622</wicri:noRegion></affiliation></author><author><name sortKey="Guidot, Alice" sort="Guidot, Alice" uniqKey="Guidot A" first="Alice" last="Guidot">Alice Guidot</name><affiliation wicri:level="1"><nlm:aff id="I3">CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326</wicri:regionArea><wicri:noRegion>31326</wicri:noRegion><wicri:noRegion>31326</wicri:noRegion></affiliation></author><author><name sortKey="Cellier, Gilles" sort="Cellier, Gilles" uniqKey="Cellier G" first="Gilles" last="Cellier">Gilles Cellier</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I4">AgroParisTech, ENGREF, 19 avenue du Maine, Paris F-75732, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>AgroParisTech, ENGREF, 19 avenue du Maine, Paris F-75732</wicri:regionArea><wicri:noRegion>75732</wicri:noRegion><placeName><settlement type="city">Paris</settlement><region type="région" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Wicker, Emmanuel" sort="Wicker, Emmanuel" uniqKey="Wicker E" first="Emmanuel" last="Wicker">Emmanuel Wicker</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author><author><name sortKey="Allen, Caitilyn" sort="Allen, Caitilyn" uniqKey="Allen C" first="Caitilyn" last="Allen">Caitilyn Allen</name><affiliation wicri:level="2"><nlm:aff id="I5">University of Wisconsin-Madison, Department of Plant Pathology, 1630 Linden Drive, Madison, WI 53706, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>University of Wisconsin-Madison, Department of Plant Pathology, 1630 Linden Drive, Madison, WI 53706</wicri:regionArea><placeName><region type="state">Wisconsin</region></placeName></affiliation></author><author><name sortKey="Fegan, Mark" sort="Fegan, Mark" uniqKey="Fegan M" first="Mark" last="Fegan">Mark Fegan</name><affiliation wicri:level="1"><nlm:aff id="I6">Biosciences Research Division, Department of Primary Industries, 475 Mickleham Rd, Attwood, VIC, 3049, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Biosciences Research Division, Department of Primary Industries, 475 Mickleham Rd, Attwood, VIC, 3049</wicri:regionArea><wicri:noRegion>3049</wicri:noRegion></affiliation></author><author><name sortKey="Pruvost, Olivier" sort="Pruvost, Olivier" uniqKey="Pruvost O" first="Olivier" last="Pruvost">Olivier Pruvost</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author><author><name sortKey="Elbaz, Mounira" sort="Elbaz, Mounira" uniqKey="Elbaz M" first="Mounira" last="Elbaz">Mounira Elbaz</name><affiliation wicri:level="1"><nlm:aff id="I3">CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326</wicri:regionArea><wicri:noRegion>31326</wicri:noRegion><wicri:noRegion>31326</wicri:noRegion></affiliation></author><author><name sortKey="Calteau, Alexandra" sort="Calteau, Alexandra" uniqKey="Calteau A" first="Alexandra" last="Calteau">Alexandra Calteau</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Salvignol, Gregory" sort="Salvignol, Gregory" uniqKey="Salvignol G" first="Gregory" last="Salvignol">Gregory Salvignol</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Mornico, Damien" sort="Mornico, Damien" uniqKey="Mornico D" first="Damien" last="Mornico">Damien Mornico</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Mangenot, Sophie" sort="Mangenot, Sophie" uniqKey="Mangenot S" first="Sophie" last="Mangenot">Sophie Mangenot</name><affiliation wicri:level="1"><nlm:aff id="I8">Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Barbe, Valerie" sort="Barbe, Valerie" uniqKey="Barbe V" first="Valérie" last="Barbe">Valérie Barbe</name><affiliation wicri:level="1"><nlm:aff id="I8">Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Medigue, Claudine" sort="Medigue, Claudine" uniqKey="Medigue C" first="Claudine" last="Médigue">Claudine Médigue</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Prior, Philippe" sort="Prior, Philippe" uniqKey="Prior P" first="Philippe" last="Prior">Philippe Prior</name><affiliation wicri:level="1"><nlm:aff id="I9">INRA-CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>INRA-CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">20550686</idno><idno type="pmc">2900269</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2900269</idno><idno type="RBID">PMC:2900269</idno><idno type="doi">10.1186/1471-2164-11-379</idno><date when="2010">2010</date><idno type="wicri:Area/Pmc/Corpus">002286</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Corpus" wicri:corpus="PMC">002286</idno><idno type="wicri:Area/Pmc/Curation">002136</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Curation">002136</idno><idno type="wicri:Area/Pmc/Checkpoint">002578</idno><idno type="wicri:explorRef" wicri:stream="Pmc" wicri:step="Checkpoint">002578</idno><idno type="wicri:Area/Ncbi/Merge">000811</idno><idno type="wicri:Area/Ncbi/Curation">000811</idno><idno type="wicri:Area/Ncbi/Checkpoint">000811</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Genomes of three tomato pathogens within the <italic>Ralstonia solanacearum </italic>species complex reveal significant evolutionary divergence</title><author><name sortKey="Remenant, Benoit" sort="Remenant, Benoit" uniqKey="Remenant B" first="Benoît" last="Remenant">Benoît Remenant</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author><author><name sortKey="Coupat Goutaland, Benedicte" sort="Coupat Goutaland, Benedicte" uniqKey="Coupat Goutaland B" first="Bénédicte" last="Coupat-Goutaland">Bénédicte Coupat-Goutaland</name><affiliation wicri:level="1"><nlm:aff id="I2">Université de Lyon, Unité Mixte de Recherche, Centre National de la Recherche Scientifique, UMR CNRS 5557 Ecologie Microbienne, IFR41 Bio Environnement et Santé, Université Lyon I, Villeurbanne cedex F-69622, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Université de Lyon, Unité Mixte de Recherche, Centre National de la Recherche Scientifique, UMR CNRS 5557 Ecologie Microbienne, IFR41 Bio Environnement et Santé, Université Lyon I, Villeurbanne cedex F-69622</wicri:regionArea><wicri:noRegion>69622</wicri:noRegion><wicri:noRegion>69622</wicri:noRegion></affiliation></author><author><name sortKey="Guidot, Alice" sort="Guidot, Alice" uniqKey="Guidot A" first="Alice" last="Guidot">Alice Guidot</name><affiliation wicri:level="1"><nlm:aff id="I3">CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326</wicri:regionArea><wicri:noRegion>31326</wicri:noRegion><wicri:noRegion>31326</wicri:noRegion></affiliation></author><author><name sortKey="Cellier, Gilles" sort="Cellier, Gilles" uniqKey="Cellier G" first="Gilles" last="Cellier">Gilles Cellier</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation><affiliation wicri:level="1"><nlm:aff id="I4">AgroParisTech, ENGREF, 19 avenue du Maine, Paris F-75732, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>AgroParisTech, ENGREF, 19 avenue du Maine, Paris F-75732</wicri:regionArea><wicri:noRegion>75732</wicri:noRegion><placeName><settlement type="city">Paris</settlement><region type="région" nuts="2">Île-de-France</region></placeName></affiliation></author><author><name sortKey="Wicker, Emmanuel" sort="Wicker, Emmanuel" uniqKey="Wicker E" first="Emmanuel" last="Wicker">Emmanuel Wicker</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author><author><name sortKey="Allen, Caitilyn" sort="Allen, Caitilyn" uniqKey="Allen C" first="Caitilyn" last="Allen">Caitilyn Allen</name><affiliation wicri:level="2"><nlm:aff id="I5">University of Wisconsin-Madison, Department of Plant Pathology, 1630 Linden Drive, Madison, WI 53706, USA</nlm:aff><country xml:lang="fr">États-Unis</country><wicri:regionArea>University of Wisconsin-Madison, Department of Plant Pathology, 1630 Linden Drive, Madison, WI 53706</wicri:regionArea><placeName><region type="state">Wisconsin</region></placeName></affiliation></author><author><name sortKey="Fegan, Mark" sort="Fegan, Mark" uniqKey="Fegan M" first="Mark" last="Fegan">Mark Fegan</name><affiliation wicri:level="1"><nlm:aff id="I6">Biosciences Research Division, Department of Primary Industries, 475 Mickleham Rd, Attwood, VIC, 3049, Australia</nlm:aff><country xml:lang="fr">Australie</country><wicri:regionArea>Biosciences Research Division, Department of Primary Industries, 475 Mickleham Rd, Attwood, VIC, 3049</wicri:regionArea><wicri:noRegion>3049</wicri:noRegion></affiliation></author><author><name sortKey="Pruvost, Olivier" sort="Pruvost, Olivier" uniqKey="Pruvost O" first="Olivier" last="Pruvost">Olivier Pruvost</name><affiliation wicri:level="1"><nlm:aff id="I1">CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author><author><name sortKey="Elbaz, Mounira" sort="Elbaz, Mounira" uniqKey="Elbaz M" first="Mounira" last="Elbaz">Mounira Elbaz</name><affiliation wicri:level="1"><nlm:aff id="I3">CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-INRA, Laboratoire Interactions Plantes-Microorganismes, UMR2594, BP52627, Castanet-Tolosan F-31326</wicri:regionArea><wicri:noRegion>31326</wicri:noRegion><wicri:noRegion>31326</wicri:noRegion></affiliation></author><author><name sortKey="Calteau, Alexandra" sort="Calteau, Alexandra" uniqKey="Calteau A" first="Alexandra" last="Calteau">Alexandra Calteau</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Salvignol, Gregory" sort="Salvignol, Gregory" uniqKey="Salvignol G" first="Gregory" last="Salvignol">Gregory Salvignol</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Mornico, Damien" sort="Mornico, Damien" uniqKey="Mornico D" first="Damien" last="Mornico">Damien Mornico</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Mangenot, Sophie" sort="Mangenot, Sophie" uniqKey="Mangenot S" first="Sophie" last="Mangenot">Sophie Mangenot</name><affiliation wicri:level="1"><nlm:aff id="I8">Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Barbe, Valerie" sort="Barbe, Valerie" uniqKey="Barbe V" first="Valérie" last="Barbe">Valérie Barbe</name><affiliation wicri:level="1"><nlm:aff id="I8">Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Medigue, Claudine" sort="Medigue, Claudine" uniqKey="Medigue C" first="Claudine" last="Médigue">Claudine Médigue</name><affiliation wicri:level="1"><nlm:aff id="I7">CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>CNRS-UMR 8030, Laboratoire d'Analyse Bioinformatique en Génomique et Métabolisme, Commissariat à l'Energie Atomique (CEA), Direction des Sciences du Vivant, Institut de Génomique, Genoscope, 2 rue Gaston Crémieux, 91057 Evry Cedex, Evry cedex F-91006</wicri:regionArea><wicri:noRegion>91006</wicri:noRegion><wicri:noRegion>91006</wicri:noRegion></affiliation></author><author><name sortKey="Prior, Philippe" sort="Prior, Philippe" uniqKey="Prior P" first="Philippe" last="Prior">Philippe Prior</name><affiliation wicri:level="1"><nlm:aff id="I9">INRA-CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion, France</nlm:aff><country xml:lang="fr">France</country><wicri:regionArea>INRA-CIRAD, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint Pierre F-97410, La Réunion</wicri:regionArea><wicri:noRegion>97410, La Réunion</wicri:noRegion><wicri:noRegion>97410, La Réunion</wicri:noRegion></affiliation></author></analytic><series><title level="j">BMC Genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2010">2010</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec><title>Background</title><p>The <italic>Ralstonia solanacearum </italic>species complex includes thousands of strains pathogenic to an unusually wide range of plant species. These globally dispersed and heterogeneous strains cause bacterial wilt diseases, which have major socio-economic impacts. Pathogenicity is an ancestral trait in <italic>R. solanacearum </italic>and strains with high genetic variation can be subdivided into four phylotypes, correlating to isolates from Asia (phylotype I), the Americas (phylotype IIA and IIB), Africa (phylotype III) and Indonesia (phylotype IV). Comparison of genome sequences strains representative of this phylogenetic diversity can help determine which traits allow this bacterium to be such a pathogen of so many different plant species and how the bacteria survive in many different habitats.</p></sec><sec><title>Results</title><p>The genomes of three tomato bacterial wilt pathogens, CFBP2957 (phy. IIA), CMR15 (phy. III) and PSI07 (phy. IV) were sequenced and manually annotated. These genomes were compared with those of three previously sequenced <italic>R. solanacearum </italic>strains: GMI1000 (tomato, phy. I), IPO1609 (potato, phy. IIB), and Molk2 (banana, phy. IIB). The major genomic features (size, G+C content, number of genes) were conserved across all of the six sequenced strains. Despite relatively high genetic distances (calculated from average nucleotide identity) and many genomic rearrangements, more than 60% of the genes of the megaplasmid and 70% of those on the chromosome are syntenic. The three new genomic sequences revealed the presence of several previously unknown traits, probably acquired by horizontal transfers, within the genomes of <italic>R. solanacearum</italic>, including a type IV secretion system, a rhi-type anti-mitotic toxin and two small plasmids. Genes involved in virulence appear to be evolving at a faster rate than the genome as a whole.</p></sec><sec><title>Conclusions</title><p>Comparative analysis of genome sequences and gene content confirmed the differentiation of <italic>R. solanacearum </italic>species complex strains into four phylotypes. Genetic distances between strains, in conjunction with CGH analysis of a larger set of strains, revealed differences great enough to consider reclassification of the <italic>R. solanacearum </italic>species complex into three species. The data are still too fragmentary to link genomic classification and phenotypes, but these new genome sequences identify a pan-genome more representative of the diversity in the <italic>R. solanancearum </italic>species complex.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Yabuuchi, E" uniqKey="Yabuuchi E">E Yabuuchi</name></author><author><name sortKey="Kosako, Y" uniqKey="Kosako Y">Y Kosako</name></author><author><name sortKey="Yano, I" uniqKey="Yano I">I Yano</name></author><author><name sortKey="Hotta, H" uniqKey="Hotta H">H Hotta</name></author><author><name sortKey="Nishiuchi, Y" uniqKey="Nishiuchi Y">Y Nishiuchi</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hayward, Ac" uniqKey="Hayward A">AC Hayward</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Buddenhagen, I" uniqKey="Buddenhagen I">I Buddenhagen</name></author><author><name sortKey="Kelman, A" uniqKey="Kelman A">A Kelman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Elphinstone, Jg" uniqKey="Elphinstone J">JG Elphinstone</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Janse, Jd" uniqKey="Janse J">JD Janse</name></author><author><name sortKey="Van Den Beld, He" uniqKey="Van Den Beld H">HE van den Beld</name></author><author><name sortKey="Elphinstone, J" uniqKey="Elphinstone J">J Elphinstone</name></author><author><name sortKey="Simpkins, S" uniqKey="Simpkins S">S Simpkins</name></author><author><name sortKey="Tjou Tam Sin, Naa" uniqKey="Tjou Tam Sin N">NAA Tjou-Tam-Sin</name></author><author><name sortKey="Van Vaerenbergh, J" uniqKey="Van Vaerenbergh J">J van Vaerenbergh</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Williamson, L" uniqKey="Williamson L">L Williamson</name></author><author><name sortKey="Nakaho, K" uniqKey="Nakaho K">K Nakaho</name></author><author><name sortKey="Hudelson, B" uniqKey="Hudelson B">B Hudelson</name></author><author><name sortKey="Allen, C" uniqKey="Allen C">C Allen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Milling, A" uniqKey="Milling A">A Milling</name></author><author><name sortKey="Meng, F" uniqKey="Meng F">F Meng</name></author><author><name sortKey="Denny, Tp" uniqKey="Denny T">TP Denny</name></author><author><name sortKey="Allen, C" uniqKey="Allen C">C Allen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Lambert, Cd" uniqKey="Lambert C">CD Lambert</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vaneechoutte, M" uniqKey="Vaneechoutte M">M Vaneechoutte</name></author><author><name sortKey="Kampfer, P" uniqKey="Kampfer P">P Kampfer</name></author><author><name sortKey="De Baere, T" uniqKey="De Baere T">T De Baere</name></author><author><name sortKey="Falsen, E" uniqKey="Falsen E">E Falsen</name></author><author><name sortKey="Verschraegen, G" uniqKey="Verschraegen G">G Verschraegen</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gillings, Mr" uniqKey="Gillings M">MR Gillings</name></author><author><name sortKey="Fahy, P" uniqKey="Fahy P">P Fahy</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Taghavi, M" uniqKey="Taghavi M">M Taghavi</name></author><author><name sortKey="Hayward, C" uniqKey="Hayward C">C Hayward</name></author><author><name sortKey="Sly, Li" uniqKey="Sly L">LI Sly</name></author><author><name sortKey="Fegan, M" uniqKey="Fegan M">M Fegan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Fegan, M" uniqKey="Fegan M">M Fegan</name></author><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Palleroni, Nj" uniqKey="Palleroni N">NJ Palleroni</name></author><author><name sortKey="Doudoroff, M" uniqKey="Doudoroff M">M Doudoroff</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hayward, Ac" uniqKey="Hayward A">AC Hayward</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author><author><name sortKey="Fegan, M" uniqKey="Fegan M">M Fegan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guidot, A" uniqKey="Guidot A">A Guidot</name></author><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author><author><name sortKey="Schoenfeld, J" uniqKey="Schoenfeld J">J Schoenfeld</name></author><author><name sortKey="Carrere, S" uniqKey="Carrere S">S Carrère</name></author><author><name sortKey="Genin, S" uniqKey="Genin S">S Genin</name></author><author><name sortKey="Boucher, C" uniqKey="Boucher C">C Boucher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eden Green, Sj" uniqKey="Eden Green S">SJ Eden-Green</name></author><author><name sortKey="Balfas, R" uniqKey="Balfas R">R Balfas</name></author><author><name sortKey="Sutarjo, T" uniqKey="Sutarjo T">T Sutarjo</name></author><author><name sortKey="Jamalius" uniqKey="Jamalius">Jamalius</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wang, Jf" uniqKey="Wang J">JF Wang</name></author><author><name sortKey="Hanson, P" uniqKey="Hanson P">P Hanson</name></author><author><name sortKey="Barnes, Ja" uniqKey="Barnes J">JA Barnes</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Salanoubat, M" uniqKey="Salanoubat M">M Salanoubat</name></author><author><name sortKey="Genin, S" uniqKey="Genin S">S Genin</name></author><author><name sortKey="Artiguenave, F" uniqKey="Artiguenave F">F Artiguenave</name></author><author><name sortKey="Gouzy, J" uniqKey="Gouzy J">J Gouzy</name></author><author><name sortKey="Mangenot, S" uniqKey="Mangenot S">S Mangenot</name></author><author><name sortKey="Arlat, M" uniqKey="Arlat M">M Arlat</name></author><author><name sortKey="Billault, A" uniqKey="Billault A">A Billault</name></author><author><name sortKey="Brottier, P" uniqKey="Brottier P">P Brottier</name></author><author><name sortKey="Camus, Jc" uniqKey="Camus J">JC Camus</name></author><author><name sortKey="Cattolico, L" uniqKey="Cattolico L">L Cattolico</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Genin, S" uniqKey="Genin S">S Genin</name></author><author><name sortKey="Boucher, C" uniqKey="Boucher C">C Boucher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Alfano, Jr" uniqKey="Alfano J">JR Alfano</name></author><author><name sortKey="Collmer, A" uniqKey="Collmer A">A Collmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Schell, Ma" uniqKey="Schell M">MA Schell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Poueymiro, M" uniqKey="Poueymiro M">M Poueymiro</name></author><author><name sortKey="Genin, S" uniqKey="Genin S">S Genin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guidot, A" uniqKey="Guidot A">A Guidot</name></author><author><name sortKey="Elbaz, M" uniqKey="Elbaz M">M Elbaz</name></author><author><name sortKey="Carrere, S" uniqKey="Carrere S">S Carrere</name></author><author><name sortKey="Siri, Mi" uniqKey="Siri M">MI Siri</name></author><author><name sortKey="Pianzzola, Mj" uniqKey="Pianzzola M">MJ Pianzzola</name></author><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author><author><name sortKey="Boucher, C" uniqKey="Boucher C">C Boucher</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gabriel, Dw" uniqKey="Gabriel D">DW Gabriel</name></author><author><name sortKey="Allen, C" uniqKey="Allen C">C Allen</name></author><author><name sortKey="Schell, M" uniqKey="Schell M">M Schell</name></author><author><name sortKey="Denny, Tp" uniqKey="Denny T">TP Denny</name></author><author><name sortKey="Greenberg, Jt" uniqKey="Greenberg J">JT Greenberg</name></author><author><name sortKey="Duan, Yp" uniqKey="Duan Y">YP Duan</name></author><author><name sortKey="Flores Cruz, Z" uniqKey="Flores Cruz Z">Z Flores-Cruz</name></author><author><name sortKey="Huang, Q" uniqKey="Huang Q">Q Huang</name></author><author><name sortKey="Clifford, Jm" uniqKey="Clifford J">JM Clifford</name></author><author><name sortKey="Presting, G" uniqKey="Presting G">G Presting</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Klappenbach, Ja" uniqKey="Klappenbach J">JA Klappenbach</name></author><author><name sortKey="Dunbar, Jm" uniqKey="Dunbar J">JM Dunbar</name></author><author><name sortKey="Schmidt, Tm" uniqKey="Schmidt T">TM Schmidt</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Medini, D" uniqKey="Medini D">D Medini</name></author><author><name sortKey="Donati, C" uniqKey="Donati C">C Donati</name></author><author><name sortKey="Tettelin, H" uniqKey="Tettelin H">H Tettelin</name></author><author><name sortKey="Masignani, V" uniqKey="Masignani V">V Masignani</name></author><author><name sortKey="Rappuoli, R" uniqKey="Rappuoli R">R Rappuoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guidot, A" uniqKey="Guidot A">A Guidot</name></author><author><name sortKey="Coupat, B" uniqKey="Coupat B">B Coupat</name></author><author><name sortKey="Fall, S" uniqKey="Fall S">S Fall</name></author><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author><author><name sortKey="Bertolla, F" uniqKey="Bertolla F">F Bertolla</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Coupat, B" uniqKey="Coupat B">B Coupat</name></author><author><name sortKey="Chaumeille Dole, F" uniqKey="Chaumeille Dole F">F Chaumeille-Dole</name></author><author><name sortKey="Fall, S" uniqKey="Fall S">S Fall</name></author><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author><author><name sortKey="Simonet, P" uniqKey="Simonet P">P Simonet</name></author><author><name sortKey="Nesme, X" uniqKey="Nesme X">X Nesme</name></author><author><name sortKey="Bertolla, F" uniqKey="Bertolla F">F Bertolla</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bertolla, F" uniqKey="Bertolla F">F Bertolla</name></author><author><name sortKey="Frostegard, A" uniqKey="Frostegard A">A Frostegard</name></author><author><name sortKey="Brito, B" uniqKey="Brito B">B Brito</name></author><author><name sortKey="Nesme, X" uniqKey="Nesme X">X Nesme</name></author><author><name sortKey="Simonet, P" uniqKey="Simonet P">P Simonet</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Nakamura, Y" uniqKey="Nakamura Y">Y Nakamura</name></author><author><name sortKey="Itoh, T" uniqKey="Itoh T">T Itoh</name></author><author><name sortKey="Matsuda, H" uniqKey="Matsuda H">H Matsuda</name></author><author><name sortKey="Gojobori, T" uniqKey="Gojobori T">T Gojobori</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Loper, Je" uniqKey="Loper J">JE Loper</name></author><author><name sortKey="Henkels, Md" uniqKey="Henkels M">MD Henkels</name></author><author><name sortKey="Shaffer, Bt" uniqKey="Shaffer B">BT Shaffer</name></author><author><name sortKey="Valeriote, Fa" uniqKey="Valeriote F">FA Valeriote</name></author><author><name sortKey="Gross, H" uniqKey="Gross H">H Gross</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Partida Martinez, Lp" uniqKey="Partida Martinez L">LP Partida-Martinez</name></author><author><name sortKey="Hertweck, C" uniqKey="Hertweck C">C Hertweck</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ramette, A" uniqKey="Ramette A">A Ramette</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Deacon, J" uniqKey="Deacon J">J Deacon</name></author><author><name sortKey="Cooper, Ra" uniqKey="Cooper R">RA Cooper</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Diorio, C" uniqKey="Diorio C">C Diorio</name></author><author><name sortKey="Cai, J" uniqKey="Cai J">J Cai</name></author><author><name sortKey="Marmor, J" uniqKey="Marmor J">J Marmor</name></author><author><name sortKey="Shinder, R" uniqKey="Shinder R">R Shinder</name></author><author><name sortKey="Dubow, Ms" uniqKey="Dubow M">MS DuBow</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Moore, Le" uniqKey="Moore L">LE Moore</name></author><author><name sortKey="Pfeiffer, R" uniqKey="Pfeiffer R">R Pfeiffer</name></author><author><name sortKey="Warner, M" uniqKey="Warner M">M Warner</name></author><author><name sortKey="Clark, M" uniqKey="Clark M">M Clark</name></author><author><name sortKey="Skibola, C" uniqKey="Skibola C">C Skibola</name></author><author><name sortKey="Steinmous, C" uniqKey="Steinmous C">C Steinmous</name></author><author><name sortKey="Alguacil, J" uniqKey="Alguacil J">J Alguacil</name></author><author><name sortKey="Rothman, N" uniqKey="Rothman N">N Rothman</name></author><author><name sortKey="Smith, Mt" uniqKey="Smith M">MT Smith</name></author><author><name sortKey="Smith, Ah" uniqKey="Smith A">AH Smith</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Arnold, R" uniqKey="Arnold R">R Arnold</name></author><author><name sortKey="Brandmaier, S" uniqKey="Brandmaier S">S Brandmaier</name></author><author><name sortKey="Kleine, F" uniqKey="Kleine F">F Kleine</name></author><author><name sortKey="Tischler, P" uniqKey="Tischler P">P Tischler</name></author><author><name sortKey="Heinz, E" uniqKey="Heinz E">E Heinz</name></author><author><name sortKey="Behrens, S" uniqKey="Behrens S">S Behrens</name></author><author><name sortKey="Niinikoski, A" uniqKey="Niinikoski A">A Niinikoski</name></author><author><name sortKey="Mewes, Hw" uniqKey="Mewes H">HW Mewes</name></author><author><name sortKey="Horn, M" uniqKey="Horn M">M Horn</name></author><author><name sortKey="Rattei, T" uniqKey="Rattei T">T Rattei</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Morales, Vm" uniqKey="Morales V">VM Morales</name></author><author><name sortKey="Sequeira, L" uniqKey="Sequeira L">L Sequeira</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Meinhart, A" uniqKey="Meinhart A">A Meinhart</name></author><author><name sortKey="Alonso, Jc" uniqKey="Alonso J">JC Alonso</name></author><author><name sortKey="Strater, N" uniqKey="Strater N">N Strater</name></author><author><name sortKey="Saenger, W" uniqKey="Saenger W">W Saenger</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ceglowski, P" uniqKey="Ceglowski P">P Ceglowski</name></author><author><name sortKey="Boitsov, A" uniqKey="Boitsov A">A Boitsov</name></author><author><name sortKey="Chai, S" uniqKey="Chai S">S Chai</name></author><author><name sortKey="Alonso, Jc" uniqKey="Alonso J">JC Alonso</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Zielenkiewicz, U" uniqKey="Zielenkiewicz U">U Zielenkiewicz</name></author><author><name sortKey="Ceglowski, P" uniqKey="Ceglowski P">P Ceglowski</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sussman, M" uniqKey="Sussman M">M Sussman</name></author><author><name sortKey="Mieog, Jc" uniqKey="Mieog J">JC Mieog</name></author><author><name sortKey="Doyle, J" uniqKey="Doyle J">J Doyle</name></author><author><name sortKey="Victor, S" uniqKey="Victor S">S Victor</name></author><author><name sortKey="Willis, Bl" uniqKey="Willis B">BL Willis</name></author><author><name sortKey="Bourne, Dg" uniqKey="Bourne D">DG Bourne</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hase, Cc" uniqKey="Hase C">CC Hase</name></author><author><name sortKey="Finkelstein, Ra" uniqKey="Finkelstein R">RA Finkelstein</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Dow, Jm" uniqKey="Dow J">JM Dow</name></author><author><name sortKey="Davies, Ha" uniqKey="Davies H">HA Davies</name></author><author><name sortKey="Daniels, Mj" uniqKey="Daniels M">MJ Daniels</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Eisenhut, M" uniqKey="Eisenhut M">M Eisenhut</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="El Yacoubi, B" uniqKey="El Yacoubi B">B El Yacoubi</name></author><author><name sortKey="Brunings, Am" uniqKey="Brunings A">AM Brunings</name></author><author><name sortKey="Yuan, Q" uniqKey="Yuan Q">Q Yuan</name></author><author><name sortKey="Shankar, S" uniqKey="Shankar S">S Shankar</name></author><author><name sortKey="Gabriel, Dw" uniqKey="Gabriel D">DW Gabriel</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Christie, Pj" uniqKey="Christie P">PJ Christie</name></author><author><name sortKey="Atmakuri, K" uniqKey="Atmakuri K">K Atmakuri</name></author><author><name sortKey="Krishnamoorthy, V" uniqKey="Krishnamoorthy V">V Krishnamoorthy</name></author><author><name sortKey="Jakubowski, S" uniqKey="Jakubowski S">S Jakubowski</name></author><author><name sortKey="Cascales, E" uniqKey="Cascales E">E Cascales</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Covacci, A" uniqKey="Covacci A">A Covacci</name></author><author><name sortKey="Rappuoli, R" uniqKey="Rappuoli R">R Rappuoli</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vergunst, Ac" uniqKey="Vergunst A">AC Vergunst</name></author><author><name sortKey="Schrammeijer, B" uniqKey="Schrammeijer B">B Schrammeijer</name></author><author><name sortKey="Den Dulk Ras, A" uniqKey="Den Dulk Ras A">A den Dulk-Ras</name></author><author><name sortKey="De Vlaam, Cm" uniqKey="De Vlaam C">CM de Vlaam</name></author><author><name sortKey="Regensburg Tuink, Tj" uniqKey="Regensburg Tuink T">TJ Regensburg-Tuink</name></author><author><name sortKey="Hooykaas, Pj" uniqKey="Hooykaas P">PJ Hooykaas</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Goris, J" uniqKey="Goris J">J Goris</name></author><author><name sortKey="Konstantinidis, Kt" uniqKey="Konstantinidis K">KT Konstantinidis</name></author><author><name sortKey="Klappenbach, Ja" uniqKey="Klappenbach J">JA Klappenbach</name></author><author><name sortKey="Coenye, T" uniqKey="Coenye T">T Coenye</name></author><author><name sortKey="Vandamme, P" uniqKey="Vandamme P">P Vandamme</name></author><author><name sortKey="Tiedje, Jm" uniqKey="Tiedje J">JM Tiedje</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stackebrandt, E" uniqKey="Stackebrandt E">E Stackebrandt</name></author><author><name sortKey="Frederiksen, W" uniqKey="Frederiksen W">W Frederiksen</name></author><author><name sortKey="Garrity, Gm" uniqKey="Garrity G">GM Garrity</name></author><author><name sortKey="Grimont, Pad" uniqKey="Grimont P">PAD Grimont</name></author><author><name sortKey="K Mpfer, P" uniqKey="K Mpfer P">P Kämpfer</name></author><author><name sortKey="Maiden, Mcj" uniqKey="Maiden M">MCJ Maiden</name></author><author><name sortKey="Nesme, X" uniqKey="Nesme X">X Nesme</name></author><author><name sortKey="Rossello Mora, R" uniqKey="Rossello Mora R">R Rossello-Mora</name></author><author><name sortKey="Swings, J" uniqKey="Swings J">J Swings</name></author><author><name sortKey="Truper, Hg" uniqKey="Truper H">HG Trüper</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Poussier, S" uniqKey="Poussier S">S Poussier</name></author><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author><author><name sortKey="Luisetti, J" uniqKey="Luisetti J">J Luisetti</name></author><author><name sortKey="Hayward, C" uniqKey="Hayward C">C Hayward</name></author><author><name sortKey="Fegan, M" uniqKey="Fegan M">M Fegan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author><author><name sortKey="Steva, H" uniqKey="Steva H">H Steva</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mahbou Somo Toukam, G" uniqKey="Mahbou Somo Toukam G">G Mahbou Somo Toukam</name></author><author><name sortKey="Cellier, G" uniqKey="Cellier G">G Cellier</name></author><author><name sortKey="Wicker, E" uniqKey="Wicker E">E Wicker</name></author><author><name sortKey="Guibaud, C" uniqKey="Guibaud C">C Guibaud</name></author><author><name sortKey="Kahane, R" uniqKey="Kahane R">R Kahane</name></author><author><name sortKey="Allen, C" uniqKey="Allen C">C Allen</name></author><author><name sortKey="Prior, P" uniqKey="Prior P">P Prior</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Boucher, Ca" uniqKey="Boucher C">CA Boucher</name></author><author><name sortKey="Barberis, Pa" uniqKey="Barberis P">PA Barberis</name></author><author><name sortKey="Trigalet, Ap" uniqKey="Trigalet A">AP Trigalet</name></author><author><name sortKey="Demery, Da" uniqKey="Demery D">DA Demery</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Aury, Jm" uniqKey="Aury J">JM Aury</name></author><author><name sortKey="Cruaud, C" uniqKey="Cruaud C">C Cruaud</name></author><author><name sortKey="Barbe, V" uniqKey="Barbe V">V Barbe</name></author><author><name sortKey="Rogier, O" uniqKey="Rogier O">O Rogier</name></author><author><name sortKey="Mangenot, S" uniqKey="Mangenot S">S Mangenot</name></author><author><name sortKey="Samson, G" uniqKey="Samson G">G Samson</name></author><author><name sortKey="Poulain, J" uniqKey="Poulain J">J Poulain</name></author><author><name sortKey="Anthouard, V" uniqKey="Anthouard V">V Anthouard</name></author><author><name sortKey="Scarpelli, C" uniqKey="Scarpelli C">C Scarpelli</name></author><author><name sortKey="Artiguenave, F" uniqKey="Artiguenave F">F Artiguenave</name></author><author><name sortKey="Wincker, P" uniqKey="Wincker P">P Wincker</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Gordon, D" uniqKey="Gordon D">D Gordon</name></author><author><name sortKey="Abajian, C" uniqKey="Abajian C">C Abajian</name></author><author><name sortKey="Green, P" uniqKey="Green P">P Green</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Bocs, S" uniqKey="Bocs S">S Bocs</name></author><author><name sortKey="Cruveiller, S" uniqKey="Cruveiller S">S Cruveiller</name></author><author><name sortKey="Vallenet, D" uniqKey="Vallenet D">D Vallenet</name></author><author><name sortKey="Nuel, G" uniqKey="Nuel G">G Nuel</name></author><author><name sortKey="Medigue, C" uniqKey="Medigue C">C Medigue</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vallenet, D" uniqKey="Vallenet D">D Vallenet</name></author><author><name sortKey="Labarre, L" uniqKey="Labarre L">L Labarre</name></author><author><name sortKey="Rouy, Z" uniqKey="Rouy Z">Z Rouy</name></author><author><name sortKey="Barbe, V" uniqKey="Barbe V">V Barbe</name></author><author><name sortKey="Bocs, S" uniqKey="Bocs S">S Bocs</name></author><author><name sortKey="Cruveiller, S" uniqKey="Cruveiller S">S Cruveiller</name></author><author><name sortKey="Lajus, A" uniqKey="Lajus A">A Lajus</name></author><author><name sortKey="Pascal, G" uniqKey="Pascal G">G Pascal</name></author><author><name sortKey="Scarpelli, C" uniqKey="Scarpelli C">C Scarpelli</name></author><author><name sortKey="Medigue, C" uniqKey="Medigue C">C Medigue</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Amadou, C" uniqKey="Amadou C">C Amadou</name></author><author><name sortKey="Pascal, G" uniqKey="Pascal G">G Pascal</name></author><author><name sortKey="Mangenot, S" uniqKey="Mangenot S">S Mangenot</name></author><author><name sortKey="Glew, M" uniqKey="Glew M">M Glew</name></author><author><name sortKey="Bontemps, C" uniqKey="Bontemps C">C Bontemps</name></author><author><name sortKey="Capela, D" uniqKey="Capela D">D Capela</name></author><author><name sortKey="Carrere, S" uniqKey="Carrere S">S Carrère</name></author><author><name sortKey="Cruveiller, S" uniqKey="Cruveiller S">S Cruveiller</name></author><author><name sortKey="Dossat, C" uniqKey="Dossat C">C Dossat</name></author><author><name sortKey="Lajus, A" uniqKey="Lajus A">A Lajus</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Vallenet, D" uniqKey="Vallenet D">D Vallenet</name></author><author><name sortKey="Engelen, S" uniqKey="Engelen S">S Engelen</name></author><author><name sortKey="Mornico, D" uniqKey="Mornico D">D Mornico</name></author><author><name sortKey="Cruveiller, S" uniqKey="Cruveiller S">S Cruveiller</name></author><author><name sortKey="Fleury, L" uniqKey="Fleury L">L Fleury</name></author><author><name sortKey="Lajus, A" uniqKey="Lajus A">A Lajus</name></author><author><name sortKey="Rouy, Z" uniqKey="Rouy Z">Z Rouy</name></author><author><name sortKey="Roche, D" uniqKey="Roche D">D Roche</name></author><author><name sortKey="Salvignol, G" uniqKey="Salvignol G">G Salvignol</name></author><author><name sortKey="Scarpelli, C" uniqKey="Scarpelli C">C Scarpelli</name></author><author><name sortKey="Medigue, C" uniqKey="Medigue C">C Medigue</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Vernikos, Gs" uniqKey="Vernikos G">GS Vernikos</name></author><author><name sortKey="Parkhill, J" uniqKey="Parkhill J">J Parkhill</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Boyer, F" uniqKey="Boyer F">F Boyer</name></author><author><name sortKey="Morgat, A" uniqKey="Morgat A">A Morgat</name></author><author><name sortKey="Labarre, L" uniqKey="Labarre L">L Labarre</name></author><author><name sortKey="Pothier, J" uniqKey="Pothier J">J Pothier</name></author><author><name sortKey="Viari, A" uniqKey="Viari A">A Viari</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ihaka, R" uniqKey="Ihaka R">R Ihaka</name></author><author><name sortKey="Gentleman, R" uniqKey="Gentleman R">R Gentleman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Thioulouse, J" uniqKey="Thioulouse J">J Thioulouse</name></author><author><name sortKey="Chessel, D" uniqKey="Chessel D">D Chessel</name></author><author><name sortKey="Doledec, S" uniqKey="Doledec S">S Doledec</name></author><author><name sortKey="Olivier, Jm" uniqKey="Olivier J">JM Olivier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Paradis, E" uniqKey="Paradis E">E Paradis</name></author><author><name sortKey="Claude, J" uniqKey="Claude J">J Claude</name></author><author><name sortKey="Strimmer, K" uniqKey="Strimmer K">K Strimmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Karp, Pd" uniqKey="Karp P">PD Karp</name></author><author><name sortKey="Paley, S" uniqKey="Paley S">S Paley</name></author><author><name sortKey="Romero, P" uniqKey="Romero P">P Romero</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Caspi, R" uniqKey="Caspi R">R Caspi</name></author><author><name sortKey="Foerster, H" uniqKey="Foerster H">H Foerster</name></author><author><name sortKey="Fulcher, Ca" uniqKey="Fulcher C">CA Fulcher</name></author><author><name sortKey="Kaipa, P" uniqKey="Kaipa P">P Kaipa</name></author><author><name sortKey="Krummenacker, M" uniqKey="Krummenacker M">M Krummenacker</name></author><author><name sortKey="Latendresse, M" uniqKey="Latendresse M">M Latendresse</name></author><author><name sortKey="Paley, S" uniqKey="Paley S">S Paley</name></author><author><name sortKey="Rhee, Sy" uniqKey="Rhee S">SY Rhee</name></author><author><name sortKey="Shearer, Ag" uniqKey="Shearer A">AG Shearer</name></author><author><name sortKey="Tissier, C" uniqKey="Tissier C">C Tissier</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Digat, B" uniqKey="Digat B">B Digat</name></author><author><name sortKey="Escudie, A" uniqKey="Escudie A">A Escudié</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Van Elsas, Jd" uniqKey="Van Elsas J">JD Van Elsas</name></author><author><name sortKey="Kastelein, P" uniqKey="Kastelein P">P Kastelein</name></author><author><name sortKey="De Vries, Pm" uniqKey="De Vries P">PM de Vries</name></author><author><name sortKey="Van Overbeek, Ls" uniqKey="Van Overbeek L">LS Van Overbeek</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Australie</li><li>France</li><li>États-Unis</li></country><region><li>Wisconsin</li><li>Île-de-France</li></region><settlement><li>Paris</li></settlement></list><tree><country name="France"><noRegion><name sortKey="Remenant, Benoit" sort="Remenant, Benoit" uniqKey="Remenant B" first="Benoît" last="Remenant">Benoît Remenant</name></noRegion><name sortKey="Barbe, Valerie" sort="Barbe, Valerie" uniqKey="Barbe V" first="Valérie" last="Barbe">Valérie Barbe</name><name sortKey="Calteau, Alexandra" sort="Calteau, Alexandra" uniqKey="Calteau A" first="Alexandra" last="Calteau">Alexandra Calteau</name><name sortKey="Cellier, Gilles" sort="Cellier, Gilles" uniqKey="Cellier G" first="Gilles" last="Cellier">Gilles Cellier</name><name sortKey="Cellier, Gilles" sort="Cellier, Gilles" uniqKey="Cellier G" first="Gilles" last="Cellier">Gilles Cellier</name><name sortKey="Coupat Goutaland, Benedicte" sort="Coupat Goutaland, Benedicte" uniqKey="Coupat Goutaland B" first="Bénédicte" last="Coupat-Goutaland">Bénédicte Coupat-Goutaland</name><name sortKey="Elbaz, Mounira" sort="Elbaz, Mounira" uniqKey="Elbaz M" first="Mounira" last="Elbaz">Mounira Elbaz</name><name sortKey="Guidot, Alice" sort="Guidot, Alice" uniqKey="Guidot A" first="Alice" last="Guidot">Alice Guidot</name><name sortKey="Mangenot, Sophie" sort="Mangenot, Sophie" uniqKey="Mangenot S" first="Sophie" last="Mangenot">Sophie Mangenot</name><name sortKey="Medigue, Claudine" sort="Medigue, Claudine" uniqKey="Medigue C" first="Claudine" last="Médigue">Claudine Médigue</name><name sortKey="Mornico, Damien" sort="Mornico, Damien" uniqKey="Mornico D" first="Damien" last="Mornico">Damien Mornico</name><name sortKey="Prior, Philippe" sort="Prior, Philippe" uniqKey="Prior P" first="Philippe" last="Prior">Philippe Prior</name><name sortKey="Pruvost, Olivier" sort="Pruvost, Olivier" uniqKey="Pruvost O" first="Olivier" last="Pruvost">Olivier Pruvost</name><name sortKey="Salvignol, Gregory" sort="Salvignol, Gregory" uniqKey="Salvignol G" first="Gregory" last="Salvignol">Gregory Salvignol</name><name sortKey="Wicker, Emmanuel" sort="Wicker, Emmanuel" uniqKey="Wicker E" first="Emmanuel" last="Wicker">Emmanuel Wicker</name></country><country name="États-Unis"><region name="Wisconsin"><name sortKey="Allen, Caitilyn" sort="Allen, Caitilyn" uniqKey="Allen C" first="Caitilyn" last="Allen">Caitilyn Allen</name></region></country><country name="Australie"><noRegion><name sortKey="Fegan, Mark" sort="Fegan, Mark" uniqKey="Fegan M" first="Mark" last="Fegan">Mark Fegan</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Asie/explor/AustralieFrV1/Data/Ncbi/Checkpoint
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000811 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Checkpoint/biblio.hfd -nk 000811 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Asie
|area= AustralieFrV1
|flux= Ncbi
|étape= Checkpoint
|type= RBID
|clé= PMC:2900269
|texte= Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Checkpoint/RBID.i -Sk "pubmed:20550686" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Checkpoint/biblio.hfd \
| NlmPubMed2Wicri -a AustralieFrV1
| This area was generated with Dilib version V0.6.33. |  |