Spatial clustering of protein binding sites for template based protein docking.
Identifieur interne : 000119 ( Ncbi/Checkpoint ); précédent : 000118; suivant : 000120Spatial clustering of protein binding sites for template based protein docking.
Auteurs : Anisah W. Ghoorah [France] ; Marie-Dominique Devignes ; Malika Smaïl-Tabbone ; David W. RitchieSource :
- Bioinformatics (Oxford, England) [ 1367-4811 ] ; 2011.
Descripteurs français
- KwdFr :
- MESH :
English descriptors
- KwdEn :
- MESH :
- chemical , chemistry : Multiprotein Complexes.
- methods : Protein Interaction Mapping.
- Binding Sites, Databases, Protein, Humans, Models, Molecular, Protein Interaction Domains and Motifs.
Abstract
In recent years, much structural information on protein domains and their pair-wise interactions has been made available in public databases. However, it is not yet clear how best to use this information to discover general rules or interaction patterns about structural protein-protein interactions. Improving our ability to detect and exploit structural interaction patterns will help to provide a better 3D picture of the known protein interactome, and will help to guide docking-based predictions of the 3D structures of unsolved protein complexes.
DOI: 10.1093/bioinformatics/btr493
PubMed: 21873637
Affiliations:
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pubmed:21873637Le document en format XML
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Ghoorah</name><affiliation wicri:level="3"><nlm:affiliation>INRIA, LORIA, Campus Scientifique, BP 239, 54506 Vandoeuvre-lès-Nancy, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRIA, LORIA, Campus Scientifique, BP 239, 54506 Vandoeuvre-lès-Nancy</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Vandœuvre-lès-Nancy</settlement></placeName></affiliation></author><author><name sortKey="Devignes, Marie Dominique" sort="Devignes, Marie Dominique" uniqKey="Devignes M" first="Marie-Dominique" last="Devignes">Marie-Dominique Devignes</name></author><author><name sortKey="Smail Tabbone, Malika" sort="Smail Tabbone, Malika" uniqKey="Smail Tabbone M" first="Malika" last="Smaïl-Tabbone">Malika Smaïl-Tabbone</name></author><author><name sortKey="Ritchie, David W" sort="Ritchie, David W" uniqKey="Ritchie D" first="David W" last="Ritchie">David W. 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Ghoorah</name><affiliation wicri:level="3"><nlm:affiliation>INRIA, LORIA, Campus Scientifique, BP 239, 54506 Vandoeuvre-lès-Nancy, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>INRIA, LORIA, Campus Scientifique, BP 239, 54506 Vandoeuvre-lès-Nancy</wicri:regionArea><placeName><region type="region" nuts="2">Grand Est</region><region type="old region" nuts="2">Lorraine (région)</region><settlement type="city">Vandœuvre-lès-Nancy</settlement></placeName></affiliation></author><author><name sortKey="Devignes, Marie Dominique" sort="Devignes, Marie Dominique" uniqKey="Devignes M" first="Marie-Dominique" last="Devignes">Marie-Dominique Devignes</name></author><author><name sortKey="Smail Tabbone, Malika" sort="Smail Tabbone, Malika" uniqKey="Smail Tabbone M" first="Malika" last="Smaïl-Tabbone">Malika Smaïl-Tabbone</name></author><author><name sortKey="Ritchie, David W" sort="Ritchie, David W" uniqKey="Ritchie D" first="David W" last="Ritchie">David W. Ritchie</name></author></analytic><series><title level="j">Bioinformatics (Oxford, England)</title><idno type="eISSN">1367-4811</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Binding Sites</term><term>Databases, Protein</term><term>Humans</term><term>Models, Molecular</term><term>Multiprotein Complexes (chemistry)</term><term>Protein Interaction Domains and Motifs</term><term>Protein Interaction Mapping (methods)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Bases de données de protéines</term><term>Cartographie d'interactions entre protéines ()</term><term>Complexes multiprotéiques ()</term><term>Humains</term><term>Modèles moléculaires</term><term>Motifs et domaines d'intéraction protéique</term><term>Sites de fixation</term></keywords><keywords scheme="MESH" type="chemical" qualifier="chemistry" xml:lang="en"><term>Multiprotein Complexes</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Protein Interaction Mapping</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Binding Sites</term><term>Databases, Protein</term><term>Humans</term><term>Models, Molecular</term><term>Protein Interaction Domains and Motifs</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Bases de données de protéines</term><term>Cartographie d'interactions entre protéines</term><term>Complexes multiprotéiques</term><term>Humains</term><term>Modèles moléculaires</term><term>Motifs et domaines d'intéraction protéique</term><term>Sites de fixation</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In recent years, much structural information on protein domains and their pair-wise interactions has been made available in public databases. However, it is not yet clear how best to use this information to discover general rules or interaction patterns about structural protein-protein interactions. Improving our ability to detect and exploit structural interaction patterns will help to provide a better 3D picture of the known protein interactome, and will help to guide docking-based predictions of the 3D structures of unsolved protein complexes.</div></front></TEI><affiliations><list><country><li>France</li></country><region><li>Grand Est</li><li>Lorraine (région)</li></region><settlement><li>Vandœuvre-lès-Nancy</li></settlement></list><tree><noCountry><name sortKey="Devignes, Marie Dominique" sort="Devignes, Marie Dominique" uniqKey="Devignes M" first="Marie-Dominique" last="Devignes">Marie-Dominique Devignes</name><name sortKey="Ritchie, David W" sort="Ritchie, David W" uniqKey="Ritchie D" first="David W" last="Ritchie">David W. Ritchie</name><name sortKey="Smail Tabbone, Malika" sort="Smail Tabbone, Malika" uniqKey="Smail Tabbone M" first="Malika" last="Smaïl-Tabbone">Malika Smaïl-Tabbone</name></noCountry><country name="France"><region name="Grand Est"><name sortKey="Ghoorah, Anisah W" sort="Ghoorah, Anisah W" uniqKey="Ghoorah A" first="Anisah W" last="Ghoorah">Anisah W. Ghoorah</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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