The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
Identifieur interne : 000211 ( Main/Exploration ); précédent : 000210; suivant : 000212The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet
Auteurs : Tim Robertson [Danemark] ; Markus Döring [Danemark] ; Robert Guralnick [États-Unis] ; David Bloom [États-Unis] ; John Wieczorek [États-Unis] ; Kyle Braak [Danemark] ; Javier Otegui [États-Unis] ; Laura Russell [États-Unis] ; Peter Desmet [Belgique]Source :
- PLoS ONE [ 1932-6203 ] ; 2014.
Abstract
The planet is experiencing an ongoing global biodiversity crisis. Measuring the magnitude and rate of change more effectively requires access to organized, easily discoverable, and digitally-formatted biodiversity data, both legacy and new, from across the globe. Assembling this coherent digital representation of biodiversity requires the integration of data that have historically been analog, dispersed, and heterogeneous. The Integrated Publishing Toolkit (IPT) is a software package developed to support biodiversity dataset publication in a common format. The IPT’s two primary functions are to 1) encode existing species occurrence datasets and checklists, such as records from natural history collections or observations, in the Darwin Core standard to enhance interoperability of data, and 2) publish and archive data and metadata for broad use in a Darwin Core Archive, a set of files following a standard format. Here we discuss the key need for the IPT, how it has developed in response to community input, and how it continues to evolve to streamline and enhance the interoperability, discoverability, and mobilization of new data types beyond basic Darwin Core records. We close with a discussion how IPT has impacted the biodiversity research community, how it enhances data publishing in more traditional journal venues, along with new features implemented in the latest version of the IPT, and future plans for more enhancements.
Url:
DOI: 10.1371/journal.pone.0102623
PubMed: 25099149
PubMed Central: 4123864
Affiliations:
- Belgique, Danemark, États-Unis
- Californie, Colorado, Hovedstaden, Kansas, Région de Bruxelles-Capitale
- Bruxelles, Copenhague
Links toward previous steps (curation, corpus...)
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Le document en format XML
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Kansas</wicri:regionArea><placeName><region type="state">Kansas</region></placeName></affiliation></author><author><name sortKey="Desmet, Peter" sort="Desmet, Peter" uniqKey="Desmet P" first="Peter" last="Desmet">Peter Desmet</name><affiliation wicri:level="3"><nlm:aff id="aff5"><addr-line>Research Institute for Nature and Forest (INBO), Brussels, Belgium</addr-line></nlm:aff><country xml:lang="fr">Belgique</country><wicri:regionArea>Research Institute for Nature and Forest (INBO), Brussels</wicri:regionArea><placeName><settlement type="city">Bruxelles</settlement><region nuts="2">Région de Bruxelles-Capitale</region></placeName></affiliation></author></analytic><series><title level="j">PLoS ONE</title><idno type="eISSN">1932-6203</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>The planet is experiencing an ongoing global biodiversity crisis. Measuring the magnitude and rate of change more effectively requires access to organized, easily discoverable, and digitally-formatted biodiversity data, both legacy and new, from across the globe. Assembling this coherent digital representation of biodiversity requires the integration of data that have historically been analog, dispersed, and heterogeneous. The Integrated Publishing Toolkit (IPT) is a software package developed to support biodiversity dataset publication in a common format. The IPT’s two primary functions are to 1) encode existing species occurrence datasets and checklists, such as records from natural history collections or observations, in the Darwin Core standard to enhance interoperability of data, and 2) publish and archive data and metadata for broad use in a Darwin Core Archive, a set of files following a standard format. Here we discuss the key need for the IPT, how it has developed in response to community input, and how it continues to evolve to streamline and enhance the interoperability, discoverability, and mobilization of new data types beyond basic Darwin Core records. We close with a discussion how IPT has impacted the biodiversity research community, how it enhances data publishing in more traditional journal venues, along with new features implemented in the latest version of the IPT, and future plans for more enhancements.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Schimel, Ds" uniqKey="Schimel D">DS Schimel</name></author><author><name sortKey="Asner, Gp" uniqKey="Asner G">GP Asner</name></author><author><name sortKey="Moorcroft, P" uniqKey="Moorcroft P">P Moorcroft</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krishtalka, L" uniqKey="Krishtalka L">L Krishtalka</name></author><author><name sortKey="Humphrey, Ps" uniqKey="Humphrey P">PS Humphrey</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Canhos, Vp" uniqKey="Canhos V">VP Canhos</name></author><author><name sortKey="De Souza, S" uniqKey="De Souza S">S de Souza</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Vollmar, A" uniqKey="Vollmar A">A Vollmar</name></author><author><name sortKey="Macklin, Ja" uniqKey="Macklin J">JA Macklin</name></author><author><name sortKey="Ford, Ls" uniqKey="Ford L">LS Ford</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Wieczorek, J" uniqKey="Wieczorek J">J Wieczorek</name></author><author><name sortKey="Bloom, D" uniqKey="Bloom D">D Bloom</name></author><author><name sortKey="Guralnick, R" uniqKey="Guralnick R">R Guralnick</name></author><author><name sortKey="Blum, S" uniqKey="Blum S">S Blum</name></author><author><name sortKey="Doring, M" uniqKey="Doring M">M Döring</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Ari O, Ah" uniqKey="Ari O A">AH Ariño</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sullivan, B" uniqKey="Sullivan B">B Sullivan</name></author><author><name sortKey="Wood, C" uniqKey="Wood C">C Wood</name></author><author><name sortKey="Iliff, Mj" uniqKey="Iliff M">MJ Iliff</name></author><author><name sortKey="Bonney, Re" uniqKey="Bonney R">RE Bonney</name></author><author><name sortKey="Fink, D" uniqKey="Fink D">D Fink</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Heidorn, Rb" uniqKey="Heidorn R">RB Heidorn</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Benson, D" uniqKey="Benson D">D Benson</name></author><author><name sortKey="Karsch Mizrachi, I" uniqKey="Karsch Mizrachi I">I Karsch-Mizrachi</name></author><author><name sortKey="Lipman, Dj" uniqKey="Lipman D">DJ Lipman</name></author><author><name sortKey="Ostell, J" uniqKey="Ostell J">J Ostell</name></author><author><name sortKey="Sayers, Ew" uniqKey="Sayers E">EW Sayers</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guralnick, Rp" uniqKey="Guralnick R">RP Guralnick</name></author><author><name sortKey="Hill, Aw" uniqKey="Hill A">AW Hill</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stein, Br" uniqKey="Stein B">BR Stein</name></author><author><name sortKey="Wieczorek, J" uniqKey="Wieczorek J">J Wieczorek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Guralnick, Rp" uniqKey="Guralnick R">RP Guralnick</name></author><author><name sortKey="Constable, H" uniqKey="Constable H">H Constable</name></author><author><name sortKey="Wieczorek, J" uniqKey="Wieczorek J">J Wieczorek</name></author><author><name sortKey="Moritz, C" uniqKey="Moritz C">C Moritz</name></author><author><name sortKey="Peterson, At" uniqKey="Peterson A">AT Peterson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Constable, H" uniqKey="Constable H">H Constable</name></author><author><name sortKey="Guralnick, R" uniqKey="Guralnick R">R Guralnick</name></author><author><name sortKey="Wieczorek, J" uniqKey="Wieczorek J">J Wieczorek</name></author><author><name sortKey="Spencer, Cl" uniqKey="Spencer C">CL Spencer</name></author><author><name sortKey="Peterson, At" uniqKey="Peterson A">AT Peterson</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Grassle, Jf" uniqKey="Grassle J">JF Grassle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Edwards, Jl" uniqKey="Edwards J">JL Edwards</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Yesson, C" uniqKey="Yesson C">C Yesson</name></author><author><name sortKey="Brewer, Pw" uniqKey="Brewer P">PW Brewer</name></author><author><name sortKey="Sutton, T" uniqKey="Sutton T">T Sutton</name></author><author><name sortKey="Caithness, N" uniqKey="Caithness N">N Caithness</name></author><author><name sortKey="Pahwa, Js" uniqKey="Pahwa J">JS Pahwa</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Belbin, L" uniqKey="Belbin L">L Belbin</name></author><author><name sortKey="Daly, J" uniqKey="Daly J">J Daly</name></author><author><name sortKey="Hirsch, T" uniqKey="Hirsch T">T Hirsch</name></author><author><name sortKey="Hobern, D" uniqKey="Hobern D">D Hobern</name></author><author><name sortKey="Lasalle, J" uniqKey="Lasalle J">J LaSalle</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Otegui, J" uniqKey="Otegui J">J Otegui</name></author><author><name sortKey="Ari O, Ah" uniqKey="Ari O A">AH Ariño</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Sheffield, C" uniqKey="Sheffield C">C Sheffield</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chavan, V" uniqKey="Chavan V">V Chavan</name></author><author><name sortKey="Penev, L" uniqKey="Penev L">L Penev</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Desmet, P" uniqKey="Desmet P">P Desmet</name></author><author><name sortKey="Brouillet, L" uniqKey="Brouillet L">L Brouillet</name></author></analytic></biblStruct><biblStruct></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Belgique</li><li>Danemark</li><li>États-Unis</li></country><region><li>Californie</li><li>Colorado</li><li>Hovedstaden</li><li>Kansas</li><li>Région de Bruxelles-Capitale</li></region><settlement><li>Bruxelles</li><li>Copenhague</li></settlement></list><tree><country name="Danemark"><region name="Hovedstaden"><name sortKey="Robertson, Tim" sort="Robertson, Tim" uniqKey="Robertson T" first="Tim" last="Robertson">Tim Robertson</name></region><name sortKey="Braak, Kyle" sort="Braak, Kyle" uniqKey="Braak K" first="Kyle" last="Braak">Kyle Braak</name><name sortKey="Doring, Markus" sort="Doring, Markus" uniqKey="Doring M" first="Markus" last="Döring">Markus Döring</name></country><country name="États-Unis"><region name="Colorado"><name sortKey="Guralnick, Robert" sort="Guralnick, Robert" uniqKey="Guralnick R" first="Robert" last="Guralnick">Robert Guralnick</name></region><name sortKey="Bloom, David" sort="Bloom, David" uniqKey="Bloom D" first="David" last="Bloom">David Bloom</name><name sortKey="Otegui, Javier" sort="Otegui, Javier" uniqKey="Otegui J" first="Javier" last="Otegui">Javier Otegui</name><name sortKey="Russell, Laura" sort="Russell, Laura" uniqKey="Russell L" first="Laura" last="Russell">Laura Russell</name><name sortKey="Wieczorek, John" sort="Wieczorek, John" uniqKey="Wieczorek J" first="John" last="Wieczorek">John Wieczorek</name></country><country name="Belgique"><region name="Région de Bruxelles-Capitale"><name sortKey="Desmet, Peter" sort="Desmet, Peter" uniqKey="Desmet P" first="Peter" last="Desmet">Peter Desmet</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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