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<title xml:lang="en">Development of FuGO: An Ontology for Functional Genomics Investigations</title>
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<name sortKey="Whetzel, Patricia L" sort="Whetzel, Patricia L" uniqKey="Whetzel P" first="Patricia L." last="Whetzel">Patricia L. Whetzel</name>
<affiliation>
<nlm:aff id="A1">Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Brinkman, Ryan R" sort="Brinkman, Ryan R" uniqKey="Brinkman R" first="Ryan R." last="Brinkman">Ryan R. Brinkman</name>
<affiliation>
<nlm:aff id="A2">Terry Fox Laboratory, British Columbia Cancer Research Center, Vancouver, BC, Canada.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Causton, Helen C" sort="Causton, Helen C" uniqKey="Causton H" first="Helen C." last="Causton">Helen C. Causton</name>
<affiliation>
<nlm:aff id="A3">MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College, Hammersmith Hospital Campus, London, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Fan, Liju" sort="Fan, Liju" uniqKey="Fan L" first="Liju" last="Fan">Liju Fan</name>
<affiliation>
<nlm:aff id="A4">Ontology Workshop LLC, Columbia, Maryland.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name>
<affiliation>
<nlm:aff id="A5">Molecular Evolution and Bioinformatics Section, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
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<name sortKey="Fostel, Jennifer" sort="Fostel, Jennifer" uniqKey="Fostel J" first="Jennifer" last="Fostel">Jennifer Fostel</name>
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<nlm:aff id="A6">NIEHS, Research Triangle Park, North Carolina.</nlm:aff>
</affiliation>
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<author>
<name sortKey="Fragoso, Gilberto" sort="Fragoso, Gilberto" uniqKey="Fragoso G" first="Gilberto" last="Fragoso">Gilberto Fragoso</name>
<affiliation>
<nlm:aff id="A7">NCICB, NCI Center for Bioinformatics, Rockville, Maryland.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Gray, Tanya" sort="Gray, Tanya" uniqKey="Gray T" first="Tanya" last="Gray">Tanya Gray</name>
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<nlm:aff id="A5">Molecular Evolution and Bioinformatics Section, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Heiskanen, Mervi" sort="Heiskanen, Mervi" uniqKey="Heiskanen M" first="Mervi" last="Heiskanen">Mervi Heiskanen</name>
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<nlm:aff id="A7">NCICB, NCI Center for Bioinformatics, Rockville, Maryland.</nlm:aff>
</affiliation>
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<name sortKey="Hernandez Boussard, Tina" sort="Hernandez Boussard, Tina" uniqKey="Hernandez Boussard T" first="Tina" last="Hernandez-Boussard">Tina Hernandez-Boussard</name>
<affiliation>
<nlm:aff id="A8">Department of Genetics, Stanford University Medical Center, Stanford, California.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Morrison, Norman" sort="Morrison, Norman" uniqKey="Morrison N" first="Norman" last="Morrison">Norman Morrison</name>
<affiliation>
<nlm:aff id="A9">Department of Computer Science, University of Manchester, Manchester, United Kingdom.</nlm:aff>
</affiliation>
<affiliation>
<nlm:aff id="A10">NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
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<name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Sansone, Susanna Assunta" sort="Sansone, Susanna Assunta" uniqKey="Sansone S" first="Susanna-Assunta" last="Sansone">Susanna-Assunta Sansone</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Schober, Daniel" sort="Schober, Daniel" uniqKey="Schober D" first="Daniel" last="Schober">Daniel Schober</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
<affiliation>
<nlm:aff id="A12">Department of Philosophy, Center of Excellence in Bioinformatics and Life Sciences, and National Center for Biomedical Ontology, University at Buffalo, Buffalo, New York, and Institute for Formal Ontology and Medical Information Science, Saarbrücken, Germany.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Stevens, Robert" sort="Stevens, Robert" uniqKey="Stevens R" first="Robert" last="Stevens">Robert Stevens</name>
<affiliation>
<nlm:aff id="A9">Department of Computer Science, University of Manchester, Manchester, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Stoeckert, Christian J" sort="Stoeckert, Christian J" uniqKey="Stoeckert C" first="Christian J." last="Stoeckert">Christian J. Stoeckert</name>
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<nlm:aff id="A1">Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Taylor, Chris" sort="Taylor, Chris" uniqKey="Taylor C" first="Chris" last="Taylor">Chris Taylor</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="White, Joe" sort="White, Joe" uniqKey="White J" first="Joe" last="White">Joe White</name>
<affiliation>
<nlm:aff id="A13">Dana-Farber Cancer Institute, Boston, Massachusetts.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Wood, Andrew" sort="Wood, Andrew" uniqKey="Wood A" first="Andrew" last="Wood">Andrew Wood</name>
<affiliation>
<nlm:aff id="A10">NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
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<title xml:lang="en" level="a" type="main">Development of FuGO: An Ontology for Functional Genomics Investigations</title>
<author>
<name sortKey="Whetzel, Patricia L" sort="Whetzel, Patricia L" uniqKey="Whetzel P" first="Patricia L." last="Whetzel">Patricia L. Whetzel</name>
<affiliation>
<nlm:aff id="A1">Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Brinkman, Ryan R" sort="Brinkman, Ryan R" uniqKey="Brinkman R" first="Ryan R." last="Brinkman">Ryan R. Brinkman</name>
<affiliation>
<nlm:aff id="A2">Terry Fox Laboratory, British Columbia Cancer Research Center, Vancouver, BC, Canada.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Causton, Helen C" sort="Causton, Helen C" uniqKey="Causton H" first="Helen C." last="Causton">Helen C. Causton</name>
<affiliation>
<nlm:aff id="A3">MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College, Hammersmith Hospital Campus, London, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Fan, Liju" sort="Fan, Liju" uniqKey="Fan L" first="Liju" last="Fan">Liju Fan</name>
<affiliation>
<nlm:aff id="A4">Ontology Workshop LLC, Columbia, Maryland.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Field, Dawn" sort="Field, Dawn" uniqKey="Field D" first="Dawn" last="Field">Dawn Field</name>
<affiliation>
<nlm:aff id="A5">Molecular Evolution and Bioinformatics Section, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Fostel, Jennifer" sort="Fostel, Jennifer" uniqKey="Fostel J" first="Jennifer" last="Fostel">Jennifer Fostel</name>
<affiliation>
<nlm:aff id="A6">NIEHS, Research Triangle Park, North Carolina.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Fragoso, Gilberto" sort="Fragoso, Gilberto" uniqKey="Fragoso G" first="Gilberto" last="Fragoso">Gilberto Fragoso</name>
<affiliation>
<nlm:aff id="A7">NCICB, NCI Center for Bioinformatics, Rockville, Maryland.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Gray, Tanya" sort="Gray, Tanya" uniqKey="Gray T" first="Tanya" last="Gray">Tanya Gray</name>
<affiliation>
<nlm:aff id="A5">Molecular Evolution and Bioinformatics Section, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Heiskanen, Mervi" sort="Heiskanen, Mervi" uniqKey="Heiskanen M" first="Mervi" last="Heiskanen">Mervi Heiskanen</name>
<affiliation>
<nlm:aff id="A7">NCICB, NCI Center for Bioinformatics, Rockville, Maryland.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Hernandez Boussard, Tina" sort="Hernandez Boussard, Tina" uniqKey="Hernandez Boussard T" first="Tina" last="Hernandez-Boussard">Tina Hernandez-Boussard</name>
<affiliation>
<nlm:aff id="A8">Department of Genetics, Stanford University Medical Center, Stanford, California.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Morrison, Norman" sort="Morrison, Norman" uniqKey="Morrison N" first="Norman" last="Morrison">Norman Morrison</name>
<affiliation>
<nlm:aff id="A9">Department of Computer Science, University of Manchester, Manchester, United Kingdom.</nlm:aff>
</affiliation>
<affiliation>
<nlm:aff id="A10">NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Parkinson, Helen" sort="Parkinson, Helen" uniqKey="Parkinson H" first="Helen" last="Parkinson">Helen Parkinson</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Rocca Serra, Philippe" sort="Rocca Serra, Philippe" uniqKey="Rocca Serra P" first="Philippe" last="Rocca-Serra">Philippe Rocca-Serra</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Sansone, Susanna Assunta" sort="Sansone, Susanna Assunta" uniqKey="Sansone S" first="Susanna-Assunta" last="Sansone">Susanna-Assunta Sansone</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Schober, Daniel" sort="Schober, Daniel" uniqKey="Schober D" first="Daniel" last="Schober">Daniel Schober</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Smith, Barry" sort="Smith, Barry" uniqKey="Smith B" first="Barry" last="Smith">Barry Smith</name>
<affiliation>
<nlm:aff id="A12">Department of Philosophy, Center of Excellence in Bioinformatics and Life Sciences, and National Center for Biomedical Ontology, University at Buffalo, Buffalo, New York, and Institute for Formal Ontology and Medical Information Science, Saarbrücken, Germany.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Stevens, Robert" sort="Stevens, Robert" uniqKey="Stevens R" first="Robert" last="Stevens">Robert Stevens</name>
<affiliation>
<nlm:aff id="A9">Department of Computer Science, University of Manchester, Manchester, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Stoeckert, Christian J" sort="Stoeckert, Christian J" uniqKey="Stoeckert C" first="Christian J." last="Stoeckert">Christian J. Stoeckert</name>
<affiliation>
<nlm:aff id="A1">Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Taylor, Chris" sort="Taylor, Chris" uniqKey="Taylor C" first="Chris" last="Taylor">Chris Taylor</name>
<affiliation>
<nlm:aff id="A11">European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="White, Joe" sort="White, Joe" uniqKey="White J" first="Joe" last="White">Joe White</name>
<affiliation>
<nlm:aff id="A13">Dana-Farber Cancer Institute, Boston, Massachusetts.</nlm:aff>
</affiliation>
</author>
<author>
<name sortKey="Wood, Andrew" sort="Wood, Andrew" uniqKey="Wood A" first="Andrew" last="Wood">Andrew Wood</name>
<affiliation>
<nlm:aff id="A10">NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</nlm:aff>
</affiliation>
</author>
</analytic>
<series>
<title level="j">Omics : a journal of integrative biology</title>
<idno type="ISSN">1536-2310</idno>
<idno type="eISSN">1557-8100</idno>
<imprint>
<date when="2006">2006</date>
</imprint>
</series>
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<front>
<div type="abstract" xml:lang="en">
<p id="P2">The development of the Functional Genomics Investigation Ontology (FuGO) is a collaborative, international effort that will provide a resource for annotating functional genomics investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. FuGO will contain both terms that are universal to all functional genomics investigations and those that are domain specific. In this way, the ontology will serve as the “semantic glue” to provide a common understanding of data from across these disparate data sources. In addition, FuGO will reference out to existing mature ontologies to avoid the need to duplicate these resources, and will do so in such a way as to enable their ease of use in annotation. This project is in the early stages of development; the paper will describe efforts to initiate the project, the scope and organization of the project, the work accomplished to date, and the challenges encountered, as well as future plans.</p>
</div>
</front>
</TEI>
<pmc article-type="research-article" xml:lang="EN">
<pmc-comment>The publisher of this article does not allow downloading of the full text in XML form.</pmc-comment>
<pmc-dir>properties manuscript</pmc-dir>
<front>
<journal-meta>
<journal-id journal-id-type="nlm-journal-id">101131135</journal-id>
<journal-id journal-id-type="pubmed-jr-id">27023</journal-id>
<journal-id journal-id-type="nlm-ta">OMICS</journal-id>
<journal-title>Omics : a journal of integrative biology</journal-title>
<issn pub-type="ppub">1536-2310</issn>
<issn pub-type="epub">1557-8100</issn>
</journal-meta>
<article-meta>
<article-id pub-id-type="pmid">16901226</article-id>
<article-id pub-id-type="pmc">2783628</article-id>
<article-id pub-id-type="doi">10.1089/omi.2006.10.199</article-id>
<article-id pub-id-type="manuscript">NIHMS154515</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Article</subject>
</subj-group>
</article-categories>
<title-group>
<article-title>Development of FuGO: An Ontology for Functional Genomics Investigations</article-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Whetzel</surname>
<given-names>Patricia L.</given-names>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Brinkman</surname>
<given-names>Ryan R.</given-names>
</name>
<xref ref-type="aff" rid="A2">2</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Causton</surname>
<given-names>Helen C.</given-names>
</name>
<xref ref-type="aff" rid="A3">3</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Fan</surname>
<given-names>Liju</given-names>
</name>
<xref ref-type="aff" rid="A4">4</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Field</surname>
<given-names>Dawn</given-names>
</name>
<xref ref-type="aff" rid="A5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Fostel</surname>
<given-names>Jennifer</given-names>
</name>
<xref ref-type="aff" rid="A6">6</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Fragoso</surname>
<given-names>Gilberto</given-names>
</name>
<xref ref-type="aff" rid="A7">7</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Gray</surname>
<given-names>Tanya</given-names>
</name>
<xref ref-type="aff" rid="A5">5</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Heiskanen</surname>
<given-names>Mervi</given-names>
</name>
<xref ref-type="aff" rid="A7">7</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Hernandez-Boussard</surname>
<given-names>Tina</given-names>
</name>
<xref ref-type="aff" rid="A8">8</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Morrison</surname>
<given-names>Norman</given-names>
</name>
<xref ref-type="aff" rid="A9">9</xref>
<xref ref-type="aff" rid="A10">10</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Parkinson</surname>
<given-names>Helen</given-names>
</name>
<xref ref-type="aff" rid="A11">11</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Rocca-Serra</surname>
<given-names>Philippe</given-names>
</name>
<xref ref-type="aff" rid="A11">11</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sansone</surname>
<given-names>Susanna-Assunta</given-names>
</name>
<xref ref-type="aff" rid="A11">11</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Schober</surname>
<given-names>Daniel</given-names>
</name>
<xref ref-type="aff" rid="A11">11</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Smith</surname>
<given-names>Barry</given-names>
</name>
<xref ref-type="aff" rid="A12">12</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Stevens</surname>
<given-names>Robert</given-names>
</name>
<xref ref-type="aff" rid="A9">9</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Stoeckert</surname>
<given-names>Christian J.</given-names>
<suffix>Jr.</suffix>
</name>
<xref ref-type="aff" rid="A1">1</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Taylor</surname>
<given-names>Chris</given-names>
</name>
<xref ref-type="aff" rid="A11">11</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>White</surname>
<given-names>Joe</given-names>
</name>
<xref ref-type="aff" rid="A13">13</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Wood</surname>
<given-names>Andrew</given-names>
</name>
<xref ref-type="aff" rid="A10">10</xref>
</contrib>
<contrib contrib-type="author">
<collab>FuGO Working Group</collab>
<xref ref-type="author-notes" rid="FN1">14</xref>
</contrib>
</contrib-group>
<aff id="A1">
<label>1</label>
Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, Pennsylvania.</aff>
<aff id="A2">
<label>2</label>
Terry Fox Laboratory, British Columbia Cancer Research Center, Vancouver, BC, Canada.</aff>
<aff id="A3">
<label>3</label>
MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College, Hammersmith Hospital Campus, London, United Kingdom.</aff>
<aff id="A4">
<label>4</label>
Ontology Workshop LLC, Columbia, Maryland.</aff>
<aff id="A5">
<label>5</label>
Molecular Evolution and Bioinformatics Section, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</aff>
<aff id="A6">
<label>6</label>
NIEHS, Research Triangle Park, North Carolina.</aff>
<aff id="A7">
<label>7</label>
NCICB, NCI Center for Bioinformatics, Rockville, Maryland.</aff>
<aff id="A8">
<label>8</label>
Department of Genetics, Stanford University Medical Center, Stanford, California.</aff>
<aff id="A9">
<label>9</label>
Department of Computer Science, University of Manchester, Manchester, United Kingdom.</aff>
<aff id="A10">
<label>10</label>
NERC Environmental Bioinformatics Centre, Oxford Centre for Ecology and Hydrology, Oxford, United Kingdom.</aff>
<aff id="A11">
<label>11</label>
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, United Kingdom.</aff>
<aff id="A12">
<label>12</label>
Department of Philosophy, Center of Excellence in Bioinformatics and Life Sciences, and National Center for Biomedical Ontology, University at Buffalo, Buffalo, New York, and Institute for Formal Ontology and Medical Information Science, Saarbrücken, Germany.</aff>
<aff id="A13">
<label>13</label>
Dana-Farber Cancer Institute, Boston, Massachusetts.</aff>
<author-notes>
<corresp id="cor1">Address reprint requests to: Dr. Patricia L. Whetzel, Center for Bioinformatics and Department of Genetics, University of Pennsylvania School of Medicine, Philadelphia, PA 19104,
<email>whetzel@pcbi.upenn.edu</email>
</corresp>
<fn id="FN1">
<label>14</label>
<p id="P1">See FuGO webpage for a complete list of contributing groups and their members: 〈
<ext-link ext-link-type="uri" xlink:href="http://fugo.sf.net">http://fugo.sf.net</ext-link>
〉.</p>
</fn>
</author-notes>
<pub-date pub-type="nihms-submitted">
<day>27</day>
<month>10</month>
<year>2009</year>
</pub-date>
<pub-date pub-type="ppub">
<season>Summer</season>
<year>2006</year>
</pub-date>
<pub-date pub-type="pmc-release">
<day>26</day>
<month>11</month>
<year>2009</year>
</pub-date>
<volume>10</volume>
<issue>2</issue>
<fpage>199</fpage>
<lpage>204</lpage>
<permissions>
<copyright-statement>© Mary Ann Liebert, Inc.</copyright-statement>
</permissions>
<abstract>
<p id="P2">The development of the Functional Genomics Investigation Ontology (FuGO) is a collaborative, international effort that will provide a resource for annotating functional genomics investigations, including the study design, protocols and instrumentation used, the data generated and the types of analysis performed on the data. FuGO will contain both terms that are universal to all functional genomics investigations and those that are domain specific. In this way, the ontology will serve as the “semantic glue” to provide a common understanding of data from across these disparate data sources. In addition, FuGO will reference out to existing mature ontologies to avoid the need to duplicate these resources, and will do so in such a way as to enable their ease of use in annotation. This project is in the early stages of development; the paper will describe efforts to initiate the project, the scope and organization of the project, the work accomplished to date, and the challenges encountered, as well as future plans.</p>
</abstract>
<contract-num rid="EB1">R01 EB005034-02 ||EB</contract-num>
<contract-sponsor id="EB1">National Institute of Biomedical Imaging and Bioengineering : NIBIB</contract-sponsor>
</article-meta>
</front>
</pmc>
</record>

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