Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
Identifieur interne : 000041 ( Main/Exploration ); précédent : 000040; suivant : 000042Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future
Auteurs : Georgios A. Pavlopoulos ; Dimitris Malliarakis ; Nikolas Papanikolaou ; Theodosis Theodosiou ; Anton J. Enright ; Ioannis IliopoulosSource :
- GigaScience [ 2047-217X ] ; 2015.
Abstract
“Α picture is worth a thousand words.” This widely used adage sums up in a few words the notion that a successful visual representation of a concept should enable easy and rapid absorption of large amounts of information. Although, in general, the notion of capturing complex ideas using images is very appealing, would 1000 words be enough to describe the unknown in a research field such as the life sciences? Life sciences is one of the biggest generators of enormous datasets, mainly as a result of recent and rapid technological advances; their complexity can make these datasets incomprehensible without effective visualization methods. Here we discuss the past, present and future of genomic and systems biology visualization. We briefly comment on many visualization and analysis tools and the purposes that they serve. We focus on the latest libraries and programming languages that enable more effective, efficient and faster approaches for visualizing biological concepts, and also comment on the future human-computer interaction trends that would enable for enhancing visualization further.
Url:
DOI: 10.1186/s13742-015-0077-2
PubMed: 26309733
PubMed Central: 4548842
Affiliations:
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Pavlopoulos</name><affiliation><nlm:aff id="Aff1">Bioinformatics & Computational Biology Laboratory, Division of Basic Sciences, University of Crete, Medical School, 70013 Heraklion, Crete Greece</nlm:aff><wicri:noCountry code="subfield">Crete Greece</wicri:noCountry></affiliation></author><author><name sortKey="Malliarakis, Dimitris" sort="Malliarakis, Dimitris" uniqKey="Malliarakis D" first="Dimitris" last="Malliarakis">Dimitris Malliarakis</name><affiliation><nlm:aff id="Aff2">Department of Biology, University of Crete, 70013 Heraklion, Crete Greece</nlm:aff><wicri:noCountry code="subfield">Crete Greece</wicri:noCountry></affiliation></author><author><name sortKey="Papanikolaou, Nikolas" sort="Papanikolaou, Nikolas" uniqKey="Papanikolaou N" first="Nikolas" last="Papanikolaou">Nikolas Papanikolaou</name><affiliation><nlm:aff id="Aff1">Bioinformatics & Computational Biology Laboratory, Division of Basic Sciences, University of Crete, Medical School, 70013 Heraklion, Crete Greece</nlm:aff><wicri:noCountry code="subfield">Crete Greece</wicri:noCountry></affiliation></author><author><name sortKey="Theodosiou, Theodosis" sort="Theodosiou, Theodosis" uniqKey="Theodosiou T" first="Theodosis" last="Theodosiou">Theodosis Theodosiou</name><affiliation><nlm:aff id="Aff1">Bioinformatics & Computational Biology Laboratory, Division of Basic Sciences, University of Crete, Medical School, 70013 Heraklion, Crete Greece</nlm:aff><wicri:noCountry code="subfield">Crete Greece</wicri:noCountry></affiliation></author><author><name sortKey="Enright, Anton J" sort="Enright, Anton J" uniqKey="Enright A" first="Anton J." last="Enright">Anton J. Enright</name><affiliation><nlm:aff id="Aff3">EMBL - European Bioinformatics Institute, Wellcome Trust Genome Campus, Cambridge, CB10 1SD UK</nlm:aff><wicri:noCountry code="subfield">CB10 1SD UK</wicri:noCountry></affiliation></author><author><name sortKey="Iliopoulos, Ioannis" sort="Iliopoulos, Ioannis" uniqKey="Iliopoulos I" first="Ioannis" last="Iliopoulos">Ioannis Iliopoulos</name><affiliation><nlm:aff id="Aff1">Bioinformatics & Computational Biology Laboratory, Division of Basic Sciences, University of Crete, Medical School, 70013 Heraklion, Crete Greece</nlm:aff><wicri:noCountry code="subfield">Crete Greece</wicri:noCountry></affiliation></author></analytic><series><title level="j">GigaScience</title><idno type="eISSN">2047-217X</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>“Α picture is worth a thousand words.” This widely used adage sums up in a few words the notion that a successful visual representation of a concept should enable easy and rapid absorption of large amounts of information. Although, in general, the notion of capturing complex ideas using images is very appealing, would 1000 words be enough to describe the unknown in a research field such as the life sciences? Life sciences is one of the biggest generators of enormous datasets, mainly as a result of recent and rapid technological advances; their complexity can make these datasets incomprehensible without effective visualization methods. Here we discuss the past, present and future of genomic and systems biology visualization. We briefly comment on many visualization and analysis tools and the purposes that they serve. We focus on the latest libraries and programming languages that enable more effective, efficient and faster approaches for visualizing biological concepts, and also comment on the future human-computer interaction trends that would enable for enhancing visualization further.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Howe, D" uniqKey="Howe D">D Howe</name></author><author><name sortKey="Costanzo, M" uniqKey="Costanzo M">M Costanzo</name></author><author><name sortKey="Fey, P" uniqKey="Fey P">P Fey</name></author><author><name sortKey="Gojobori, T" uniqKey="Gojobori T">T Gojobori</name></author><author><name sortKey="Hannick, L" uniqKey="Hannick L">L Hannick</name></author><author><name sortKey="Hide, W" uniqKey="Hide W">W Hide</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Liolios, K" uniqKey="Liolios K">K Liolios</name></author><author><name sortKey="Mavromatis, K" uniqKey="Mavromatis 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uniqKey="Wang C">C Wang</name></author><author><name sortKey="Tevz, G" uniqKey="Tevz G">G Tevz</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Roge, X" uniqKey="Roge X">X Roge</name></author><author><name sortKey="Zhang, X" uniqKey="Zhang X">X Zhang</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Dietrich, S" uniqKey="Dietrich S">S Dietrich</name></author><author><name sortKey="Wiegand, S" uniqKey="Wiegand S">S Wiegand</name></author><author><name sortKey="Liesegang, H" uniqKey="Liesegang H">H Liesegang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Enright, Anton J" sort="Enright, Anton J" uniqKey="Enright A" first="Anton J." last="Enright">Anton J. Enright</name><name sortKey="Iliopoulos, Ioannis" sort="Iliopoulos, Ioannis" uniqKey="Iliopoulos I" first="Ioannis" last="Iliopoulos">Ioannis Iliopoulos</name><name sortKey="Malliarakis, Dimitris" sort="Malliarakis, Dimitris" uniqKey="Malliarakis D" first="Dimitris" last="Malliarakis">Dimitris Malliarakis</name><name sortKey="Papanikolaou, Nikolas" sort="Papanikolaou, Nikolas" uniqKey="Papanikolaou N" first="Nikolas" last="Papanikolaou">Nikolas Papanikolaou</name><name sortKey="Pavlopoulos, Georgios A" sort="Pavlopoulos, Georgios A" uniqKey="Pavlopoulos G" first="Georgios A." last="Pavlopoulos">Georgios A. Pavlopoulos</name><name sortKey="Theodosiou, Theodosis" sort="Theodosiou, Theodosis" uniqKey="Theodosiou T" first="Theodosis" last="Theodosiou">Theodosis Theodosiou</name></noCountry></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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