The Genome of Spironucleus salmonicida Highlights a Fish Pathogen Adapted to Fluctuating Environments
Identifieur interne : 000071 ( Main/Exploration ); précédent : 000070; suivant : 000072The Genome of Spironucleus salmonicida Highlights a Fish Pathogen Adapted to Fluctuating Environments
Auteurs : Feifei Xu ; Jon Jerlström-Hultqvist ; Elin Einarsson ; Ásgeir Ástvaldsson ; Staffan G. Sv Rd ; Jan O. AnderssonSource :
- PLoS Genetics [ 1553-7390 ] ; 2014.
Abstract
Url:
DOI: 10.1371/journal.pgen.1004053
PubMed: 24516394
PubMed Central: 3916229
Affiliations:
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<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The Genome of <italic>Spironucleus salmonicida</italic> Highlights a Fish Pathogen Adapted to Fluctuating Environments</title><author><name sortKey="Xu, Feifei" sort="Xu, Feifei" uniqKey="Xu F" first="Feifei" last="Xu">Feifei Xu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Jerlstrom Hultqvist, Jon" sort="Jerlstrom Hultqvist, Jon" uniqKey="Jerlstrom Hultqvist J" first="Jon" last="Jerlström-Hultqvist">Jon Jerlström-Hultqvist</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Einarsson, Elin" sort="Einarsson, Elin" uniqKey="Einarsson E" first="Elin" last="Einarsson">Elin Einarsson</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Astvaldsson, Asgeir" sort="Astvaldsson, Asgeir" uniqKey="Astvaldsson A" first="Ásgeir" last="Ástvaldsson">Ásgeir Ástvaldsson</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Sv Rd, Staffan G" sort="Sv Rd, Staffan G" uniqKey="Sv Rd S" first="Staffan G." last="Sv Rd">Staffan G. Sv Rd</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Andersson, Jan O" sort="Andersson, Jan O" uniqKey="Andersson J" first="Jan O." last="Andersson">Jan O. Andersson</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PMC</idno><idno type="pmid">24516394</idno><idno type="pmc">3916229</idno><idno type="url">http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3916229</idno><idno type="RBID">PMC:3916229</idno><idno type="doi">10.1371/journal.pgen.1004053</idno><date when="2014">2014</date><idno type="wicri:Area/Pmc/Corpus">000032</idno><idno type="wicri:Area/Pmc/Curation">000032</idno><idno type="wicri:Area/Pmc/Checkpoint">000048</idno><idno type="wicri:Area/Ncbi/Merge">000185</idno><idno type="wicri:Area/Ncbi/Curation">000185</idno><idno type="wicri:Area/Ncbi/Checkpoint">000185</idno><idno type="wicri:doubleKey">1553-7390:2014:Xu F:the:genome:of</idno><idno type="wicri:Area/Main/Merge">000071</idno><idno type="wicri:Area/Main/Curation">000071</idno><idno type="wicri:Area/Main/Exploration">000071</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">The Genome of <italic>Spironucleus salmonicida</italic> Highlights a Fish Pathogen Adapted to Fluctuating Environments</title><author><name sortKey="Xu, Feifei" sort="Xu, Feifei" uniqKey="Xu F" first="Feifei" last="Xu">Feifei Xu</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Jerlstrom Hultqvist, Jon" sort="Jerlstrom Hultqvist, Jon" uniqKey="Jerlstrom Hultqvist J" first="Jon" last="Jerlström-Hultqvist">Jon Jerlström-Hultqvist</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Einarsson, Elin" sort="Einarsson, Elin" uniqKey="Einarsson E" first="Elin" last="Einarsson">Elin Einarsson</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Astvaldsson, Asgeir" sort="Astvaldsson, Asgeir" uniqKey="Astvaldsson A" first="Ásgeir" last="Ástvaldsson">Ásgeir Ástvaldsson</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Sv Rd, Staffan G" sort="Sv Rd, Staffan G" uniqKey="Sv Rd S" first="Staffan G." last="Sv Rd">Staffan G. Sv Rd</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author><author><name sortKey="Andersson, Jan O" sort="Andersson, Jan O" uniqKey="Andersson J" first="Jan O." last="Andersson">Jan O. Andersson</name><affiliation><nlm:aff id="aff1"></nlm:aff></affiliation></author></analytic><series><title level="j">PLoS Genetics</title><idno type="ISSN">1553-7390</idno><idno type="eISSN">1553-7404</idno><imprint><date when="2014">2014</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p><italic>Spironucleus salmonicida</italic> causes systemic infections in salmonid fish. It belongs to the group diplomonads, binucleated heterotrophic flagellates adapted to micro-aerobic environments. Recently we identified energy-producing hydrogenosomes in <italic>S. salmonicida</italic>. Here we present a genome analysis of the fish parasite with a focus on the comparison to the more studied diplomonad <italic>Giardia intestinalis</italic>. We annotated 8067 protein coding genes in the ∼12.9 Mbp <italic>S. salmonicida</italic> genome. Unlike <italic>G. intestinalis</italic>, promoter-like motifs were found upstream of genes which are correlated with gene expression, suggesting a more elaborate transcriptional regulation. <italic>S. salmonicida</italic> can utilise more carbohydrates as energy sources, has an extended amino acid and sulfur metabolism, and more enzymes involved in scavenging of reactive oxygen species compared to <italic>G. intestinalis</italic>. Both genomes have large families of cysteine-rich membrane proteins. A cluster analysis indicated large divergence of these families in the two diplomonads. Nevertheless, one of <italic>S. salmonicida</italic> cysteine-rich proteins was localised to the plasma membrane similar to <italic>G. intestinalis</italic> variant-surface proteins. We identified <italic>S. salmonicida</italic> homologs to cyst wall proteins and showed that one of these is functional when expressed in <italic>Giardia</italic>. This suggests that the fish parasite is transmitted as a cyst between hosts. The extended metabolic repertoire and more extensive gene regulation compared to <italic>G. intestinalis</italic> suggest that the fish parasite is more adapted to cope with environmental fluctuations. Our genome analyses indicate that <italic>S. salmonicida</italic> is a well-adapted pathogen that can colonize different sites in the host.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Adl, Sm" uniqKey="Adl S">SM Adl</name></author><author><name sortKey="Simpson, Ag" uniqKey="Simpson A">AG Simpson</name></author><author><name sortKey="Lane, Ce" uniqKey="Lane C">CE Lane</name></author><author><name sortKey="Lukes, J" uniqKey="Lukes J">J Lukes</name></author><author><name sortKey="Bass, D" uniqKey="Bass D">D Bass</name></author></analytic></biblStruct><biblStruct></biblStruct><biblStruct><analytic><author><name sortKey="Tovar, J" uniqKey="Tovar J">J Tovar</name></author><author><name sortKey="Le N Avila, G" uniqKey="Le N Avila G">G León-Avila</name></author><author><name sortKey="Sanchez, Lb" uniqKey="Sanchez L">LB Sánchez</name></author><author><name sortKey="Sutak, R" uniqKey="Sutak R">R Sutak</name></author><author><name 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uniqKey="Barton G">GJ Barton</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list></list><tree><noCountry><name sortKey="Andersson, Jan O" sort="Andersson, Jan O" uniqKey="Andersson J" first="Jan O." last="Andersson">Jan O. 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HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:24516394" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a ScalaireV1
| This area was generated with Dilib version V0.6.27. |  |