Rudimentary quantification abilities are found in numerous animal species and in human infants all demonstrating the ability to discriminate between quantities differing in numerical size. An open question is whether individuals rely on different underlying systems to discriminate between large (analogue magnitude system (AMS) for number of items exceeding 3) and small quantities (object-file system (OFS) for number of items below 4), or they use only one system (AMS) for the entire number range. The two-system hypothesis has been supported by finding reduced ability to discriminate between quantities that cross the large-small boundary in several species. Recently, the role of cognitive representation, i.e., memory, in quantity discrimination has also been recognized. Here, we investigated whether angelfish can discriminate quantities across the boundary under two memory conditions. In a binary choice test, single angelfish were allowed to see groups (shoals) of conspecifics of different numerical size on the two sides of their test tank. In Experiment 1, their choice was recorded after a 2-sec retention interval during which shoal size information was unavailable. Angelfish were able to discriminate the larger shoal across the boundary when the shoals differed by a 2:1 or higher ratio, but not when the ratio was lower. In Experiment 2, however, with a 15-sec retention interval, angelfish could only detect a four-fold difference in ratio but failed to detect a three- or a two-fold difference across the boundary. These results suggest that angelfish can remember smaller differences for a short (2 sec) but not for a longer (15 sec) period. Together with previous findings, the current results support the idea that angelfish use two distinct systems for representing quantity, but they may recruit the AMS even for the small number range under some circumstances, e.g., when higher memory demand is imposed by a greater retention interval.