Horizontal Transfers of Tc1 Elements between Teleost Fishes and Their Vertebrate Parasites, Lampreys
Identifieur interne : 000211 ( Main/Exploration ); précédent : 000210; suivant : 000212Horizontal Transfers of Tc1 Elements between Teleost Fishes and Their Vertebrate Parasites, Lampreys
Auteurs : Shigehiro Kuraku [Allemagne, Japon] ; Huan Qiu [Allemagne, États-Unis] ; Axel Meyer [Allemagne]Source :
- Genome Biology and Evolution [ 1759-6653 ] ; 2012.
Abstract
Horizontal gene transfer (HGT) has been recognized to be an important mechanism that shaped the evolution and genomes of prokaryotes and unicellular eukaryotes. However, HGT is regarded to be exceedingly rare among eukaryotes. We discovered massive transfers of a DNA transposon, a Tc1 element encoding a transposase, between multiple teleost fishes and lampreys that last shared a common ancestor over 500 Ma. Members of this group of Tc1 elements were found to exhibit a mosaic phylogenetic distribution, yet their sequences were highly similar even between distantly related lineages (95%–99% identity). Our molecular phylogenetic analyses suggested that horizontal transfers of this element happened repeatedly, involving multiple teleost fishes that are phylogenetically only distantly related. Interestingly, almost all the affected teleost lineages are also known to be subject to lamprey parasitism, suggesting that the horizontal transfers between vertebrates might have occurred through parasite–host interaction. The genomes of several northern hemisphere lamprey species, including that of the sea lamprey (
Url:
DOI: 10.1093/gbe/evs069
PubMed: 22887124
PubMed Central: 3516227
Affiliations:
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uniqKey="Kuraku S" first="Shigehiro" last="Kuraku">Shigehiro Kuraku</name><affiliation wicri:level="1"><nlm:aff id="evs069-AFF1">Department of Biology, University of Konstanz, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Biology, University of Konstanz</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="evs069-AFF2">Konstanz Research School Chemical Biology, University of Konstanz, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Konstanz Research School Chemical Biology, University of Konstanz</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="evs069-AFF3">Present address: Genome Resource and Analysis Unit, Center for Developmental Biology, RIKEN, Kobe, Japan</nlm:aff><country xml:lang="fr">Japon</country><wicri:regionArea>Present address: Genome Resource and Analysis Unit, Center for Developmental Biology, RIKEN, Kobe</wicri:regionArea></affiliation></author><author><name sortKey="Qiu, Huan" sort="Qiu, Huan" uniqKey="Qiu H" first="Huan" last="Qiu">Huan Qiu</name><affiliation wicri:level="1"><nlm:aff id="evs069-AFF1">Department of Biology, University of Konstanz, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Biology, University of Konstanz</wicri:regionArea></affiliation><affiliation wicri:level="2"><nlm:aff id="evs069-AFF4">Present address: Bigelow Laboratory for Ocean Science, West Boothbay Harbor, Maine</nlm:aff><country xml:lang="fr">États-Unis</country><placeName><region type="state">Maine (État)</region></placeName><wicri:cityArea>Present address: Bigelow Laboratory for Ocean Science, West Boothbay Harbor</wicri:cityArea></affiliation></author><author><name sortKey="Meyer, Axel" sort="Meyer, Axel" uniqKey="Meyer A" first="Axel" last="Meyer">Axel Meyer</name><affiliation wicri:level="1"><nlm:aff id="evs069-AFF1">Department of Biology, University of Konstanz, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Department of Biology, University of Konstanz</wicri:regionArea></affiliation><affiliation wicri:level="1"><nlm:aff id="evs069-AFF2">Konstanz Research School Chemical Biology, University of Konstanz, Germany</nlm:aff><country xml:lang="fr">Allemagne</country><wicri:regionArea>Konstanz Research School Chemical Biology, University of Konstanz</wicri:regionArea></affiliation></author></analytic><series><title level="j">Genome Biology and Evolution</title><idno type="eISSN">1759-6653</idno><imprint><date when="2012">2012</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><p>Horizontal gene transfer (HGT) has been recognized to be an important mechanism that shaped the evolution and genomes of prokaryotes and unicellular eukaryotes. However, HGT is regarded to be exceedingly rare among eukaryotes. We discovered massive transfers of a DNA transposon, a Tc1 element encoding a transposase, between multiple teleost fishes and lampreys that last shared a common ancestor over 500 Ma. Members of this group of Tc1 elements were found to exhibit a mosaic phylogenetic distribution, yet their sequences were highly similar even between distantly related lineages (95%–99% identity). Our molecular phylogenetic analyses suggested that horizontal transfers of this element happened repeatedly, involving multiple teleost fishes that are phylogenetically only distantly related. Interestingly, almost all the affected teleost lineages are also known to be subject to lamprey parasitism, suggesting that the horizontal transfers between vertebrates might have occurred through parasite–host interaction. The genomes of several northern hemisphere lamprey species, including that of the sea lamprey (<italic>Petromyzon marinus</italic>), were found to contain thousands of copies of the foreign elements. Impact of this event is discussed in relation to other peculiar genomic features of lampreys.</p></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Azuma, Y" uniqKey="Azuma Y">Y Azuma</name></author><author><name sortKey="Kumazawa, Y" uniqKey="Kumazawa Y">Y Kumazawa</name></author><author><name sortKey="Miya, M" uniqKey="Miya M">M Miya</name></author><author><name sortKey="Mabuchi, K" uniqKey="Mabuchi K">K Mabuchi</name></author><author><name sortKey="Nishida, M" uniqKey="Nishida M">M Nishida</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Birney, E" uniqKey="Birney E">E Birney</name></author><author><name sortKey="Clamp, M" uniqKey="Clamp M">M Clamp</name></author><author><name sortKey="Durbin, R" uniqKey="Durbin R">R Durbin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Chen, Wj" uniqKey="Chen W">WJ Chen</name></author><author><name sortKey="Orti, G" 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uniqKey="Hardisty M">M Hardisty</name></author><author><name sortKey="Potter, I" uniqKey="Potter I">I Potter</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Huang, X" uniqKey="Huang X">X Huang</name></author><author><name sortKey="Madan, A" uniqKey="Madan A">A Madan</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hubbard, Tj" uniqKey="Hubbard T">TJ Hubbard</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Hurst, Ld" uniqKey="Hurst L">LD Hurst</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Inoue, Jg" uniqKey="Inoue J">JG Inoue</name></author><author><name sortKey="Miya, M" uniqKey="Miya M">M Miya</name></author><author><name sortKey="Tsukamoto, K" uniqKey="Tsukamoto K">K Tsukamoto</name></author><author><name sortKey="Nishida, M" uniqKey="Nishida M">M Nishida</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Katoh, K" uniqKey="Katoh K">K Katoh</name></author><author><name sortKey="Kuma, K" uniqKey="Kuma K">K Kuma</name></author><author><name sortKey="Toh, H" uniqKey="Toh H">H Toh</name></author><author><name sortKey="Miyata, T" uniqKey="Miyata T">T Miyata</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Keeling, Pj" uniqKey="Keeling P">PJ Keeling</name></author><author><name sortKey="Palmer, Jd" uniqKey="Palmer J">JD Palmer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kikugawa, K" uniqKey="Kikugawa K">K Kikugawa</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Koonin, Ev" uniqKey="Koonin E">EV Koonin</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kordis, D" uniqKey="Kordis D">D Kordis</name></author><author><name sortKey="Gubensek, F" uniqKey="Gubensek F">F Gubensek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Krkosek, M" uniqKey="Krkosek M">M Krkosek</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kuraku, S" uniqKey="Kuraku S">S Kuraku</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Kuraku, S" uniqKey="Kuraku S">S Kuraku</name></author><author><name sortKey="Kuratani, S" uniqKey="Kuratani S">S Kuratani</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Leaver, Mj" uniqKey="Leaver M">MJ Leaver</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Li, C" uniqKey="Li C">C Li</name></author><author><name sortKey="Lu, G" uniqKey="Lu G">G Lu</name></author><author><name sortKey="Orti, G" uniqKey="Orti G">G Orti</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Maitland, Ps" uniqKey="Maitland P">PS Maitland</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Mayden, Rl" uniqKey="Mayden R">RL Mayden</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Miskey, C" uniqKey="Miskey C">C Miskey</name></author><author><name sortKey="Izsvak, Z" uniqKey="Izsvak Z">Z Izsvak</name></author><author><name sortKey="Kawakami, K" uniqKey="Kawakami K">K Kawakami</name></author><author><name sortKey="Ivics, Z" uniqKey="Ivics Z">Z Ivics</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Miya, M" uniqKey="Miya M">M Miya</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Novick, P" uniqKey="Novick P">P Novick</name></author><author><name sortKey="Smith, J" uniqKey="Smith J">J Smith</name></author><author><name sortKey="Ray, D" uniqKey="Ray D">D Ray</name></author><author><name sortKey="Boissinot, S" uniqKey="Boissinot S">S Boissinot</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pace, Jk" uniqKey="Pace J">JK Pace</name></author><author><name sortKey="Gilbert, C" uniqKey="Gilbert C">C Gilbert</name></author><author><name sortKey="Clark, Ms" uniqKey="Clark M">MS Clark</name></author><author><name sortKey="Feschotte, C" uniqKey="Feschotte C">C Feschotte</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Patrick, H" uniqKey="Patrick H">H Patrick</name></author><author><name sortKey="Sutton, T" uniqKey="Sutton T">T Sutton</name></author><author><name sortKey="Swink, W" uniqKey="Swink W">W Swink</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Piskurek, O" uniqKey="Piskurek O">O Piskurek</name></author><author><name sortKey="Okada, N" uniqKey="Okada N">N Okada</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pocwierz Kotus, A" uniqKey="Pocwierz Kotus A">A Pocwierz-Kotus</name></author><author><name sortKey="Burzynski, A" uniqKey="Burzynski A">A Burzynski</name></author><author><name sortKey="Wenne, R" uniqKey="Wenne R">R Wenne</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Potter, Ic" uniqKey="Potter I">IC Potter</name></author><author><name sortKey="Rothwell, B" uniqKey="Rothwell B">B Rothwell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Qiu, H" uniqKey="Qiu H">H Qiu</name></author><author><name sortKey="Hildebrand, F" uniqKey="Hildebrand F">F Hildebrand</name></author><author><name sortKey="Kuraku, S" uniqKey="Kuraku S">S Kuraku</name></author><author><name sortKey="Meyer, A" uniqKey="Meyer A">A Meyer</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Sambrook, J" uniqKey="Sambrook J">J Sambrook</name></author><author><name sortKey="Russell, D" uniqKey="Russell D">D Russell</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Scott, Wb" uniqKey="Scott W">WB Scott</name></author><author><name sortKey="Crossman, Ej" uniqKey="Crossman E">EJ Crossman</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Smith, Jj" uniqKey="Smith J">JJ Smith</name></author><author><name sortKey="Antonacci, F" uniqKey="Antonacci F">F Antonacci</name></author><author><name sortKey="Eichler, Ee" uniqKey="Eichler E">EE Eichler</name></author><author><name sortKey="Amemiya, Ct" uniqKey="Amemiya C">CT Amemiya</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Stamatakis, A" uniqKey="Stamatakis A">A Stamatakis</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Steinke, D" uniqKey="Steinke D">D Steinke</name></author><author><name sortKey="Salzburger, W" uniqKey="Salzburger W">W Salzburger</name></author><author><name sortKey="Meyer, A" uniqKey="Meyer 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uniqKey="Yohn C">CT Yohn</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Allemagne</li><li>Japon</li><li>États-Unis</li></country><region><li>Maine (État)</li></region></list><tree><country name="Allemagne"><noRegion><name sortKey="Kuraku, Shigehiro" sort="Kuraku, Shigehiro" uniqKey="Kuraku S" first="Shigehiro" last="Kuraku">Shigehiro Kuraku</name></noRegion><name sortKey="Kuraku, Shigehiro" sort="Kuraku, Shigehiro" uniqKey="Kuraku S" first="Shigehiro" last="Kuraku">Shigehiro Kuraku</name><name sortKey="Meyer, Axel" sort="Meyer, Axel" uniqKey="Meyer A" first="Axel" last="Meyer">Axel Meyer</name><name sortKey="Meyer, Axel" sort="Meyer, Axel" uniqKey="Meyer A" first="Axel" last="Meyer">Axel Meyer</name><name sortKey="Qiu, Huan" sort="Qiu, Huan" uniqKey="Qiu H" first="Huan" last="Qiu">Huan Qiu</name></country><country name="Japon"><noRegion><name sortKey="Kuraku, Shigehiro" sort="Kuraku, Shigehiro" uniqKey="Kuraku S" first="Shigehiro" last="Kuraku">Shigehiro Kuraku</name></noRegion></country><country name="États-Unis"><region name="Maine (État)"><name sortKey="Qiu, Huan" sort="Qiu, Huan" uniqKey="Qiu H" first="Huan" last="Qiu">Huan Qiu</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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