Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model.
Identifieur interne : 000744 ( PubMed/Corpus ); précédent : 000743; suivant : 000745Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model.
Auteurs : N E Buroker ; J R Brown ; T A Gilbert ; P J O'Hara ; A T Beckenbach ; W K Thomas ; M J SmithSource :
- Genetics [ 0016-6731 ] ; 1990.
English descriptors
- KwdEn :
- MESH :
- chemical , genetics : DNA, Mitochondrial.
- chemical , metabolism : DNA, Mitochondrial.
- genetics : Fishes.
- Animals, Base Sequence, DNA Replication, Models, Genetic, Molecular Sequence Data, Nucleic Acid Conformation, Polymorphism, Restriction Fragment Length, Repetitive Sequences, Nucleic Acid.
Abstract
Extensive length polymorphism and heteroplasmy (multiple forms within an individual) of the D-loop region are observed in mitochondrial DNA of the white sturgeon (Acipenser transmontanus). The nucleotide sequence of this region, for both a short and a long form, shows that the differences are due to variable numbers of a perfect 82-bp direct repeat. We propose a model for the replicative origin of length differences, involving a competitive equilibrium between the heavy strand and the D-loop strand. This model suggests that frequent misalignment in the repeat region prior to elongation, facilitated by a stable secondary structure in the displaced strand, can explain both the polymorphism and heteroplasmy in this species.
PubMed: 1968410
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pubmed:1968410Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model.</title><author><name sortKey="Buroker, N E" sort="Buroker, N E" uniqKey="Buroker N" first="N E" last="Buroker">N E Buroker</name><affiliation><nlm:affiliation>School of Medicine, Department of Pediatrics, University of Washington, Seattle 98195.</nlm:affiliation></affiliation></author><author><name sortKey="Brown, J R" sort="Brown, J R" uniqKey="Brown J" first="J R" last="Brown">J R Brown</name></author><author><name sortKey="Gilbert, T A" sort="Gilbert, T A" uniqKey="Gilbert T" first="T A" last="Gilbert">T A Gilbert</name></author><author><name sortKey="O Hara, P J" sort="O Hara, P J" uniqKey="O Hara P" first="P J" last="O'Hara">P J O'Hara</name></author><author><name sortKey="Beckenbach, A T" sort="Beckenbach, A T" uniqKey="Beckenbach A" first="A T" last="Beckenbach">A T Beckenbach</name></author><author><name sortKey="Thomas, W K" sort="Thomas, W K" uniqKey="Thomas W" first="W K" last="Thomas">W K Thomas</name></author><author><name sortKey="Smith, M J" sort="Smith, M J" uniqKey="Smith M" first="M J" last="Smith">M J Smith</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="1990">1990</date><idno type="RBID">pubmed:1968410</idno><idno type="pmid">1968410</idno><idno type="wicri:Area/PubMed/Corpus">000744</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000744</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model.</title><author><name sortKey="Buroker, N E" sort="Buroker, N E" uniqKey="Buroker N" first="N E" last="Buroker">N E Buroker</name><affiliation><nlm:affiliation>School of Medicine, Department of Pediatrics, University of Washington, Seattle 98195.</nlm:affiliation></affiliation></author><author><name sortKey="Brown, J R" sort="Brown, J R" uniqKey="Brown J" first="J R" last="Brown">J R Brown</name></author><author><name sortKey="Gilbert, T A" sort="Gilbert, T A" uniqKey="Gilbert T" first="T A" last="Gilbert">T A Gilbert</name></author><author><name sortKey="O Hara, P J" sort="O Hara, P J" uniqKey="O Hara P" first="P J" last="O'Hara">P J O'Hara</name></author><author><name sortKey="Beckenbach, A T" sort="Beckenbach, A T" uniqKey="Beckenbach A" first="A T" last="Beckenbach">A T Beckenbach</name></author><author><name sortKey="Thomas, W K" sort="Thomas, W K" uniqKey="Thomas W" first="W K" last="Thomas">W K Thomas</name></author><author><name sortKey="Smith, M J" sort="Smith, M J" uniqKey="Smith M" first="M J" last="Smith">M J Smith</name></author></analytic><series><title level="j">Genetics</title><idno type="ISSN">0016-6731</idno><imprint><date when="1990" type="published">1990</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Base Sequence</term><term>DNA Replication</term><term>DNA, Mitochondrial (genetics)</term><term>DNA, Mitochondrial (metabolism)</term><term>Fishes (genetics)</term><term>Models, Genetic</term><term>Molecular Sequence Data</term><term>Nucleic Acid Conformation</term><term>Polymorphism, Restriction Fragment Length</term><term>Repetitive Sequences, Nucleic Acid</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>DNA, Mitochondrial</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>DNA, Mitochondrial</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fishes</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Base Sequence</term><term>DNA Replication</term><term>Models, Genetic</term><term>Molecular Sequence Data</term><term>Nucleic Acid Conformation</term><term>Polymorphism, Restriction Fragment Length</term><term>Repetitive Sequences, Nucleic Acid</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Extensive length polymorphism and heteroplasmy (multiple forms within an individual) of the D-loop region are observed in mitochondrial DNA of the white sturgeon (Acipenser transmontanus). The nucleotide sequence of this region, for both a short and a long form, shows that the differences are due to variable numbers of a perfect 82-bp direct repeat. We propose a model for the replicative origin of length differences, involving a competitive equilibrium between the heavy strand and the D-loop strand. This model suggests that frequent misalignment in the repeat region prior to elongation, facilitated by a stable secondary structure in the displaced strand, can explain both the polymorphism and heteroplasmy in this species.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">1968410</PMID><DateCreated><Year>1990</Year><Month>04</Month><Day>04</Day></DateCreated><DateCompleted><Year>1990</Year><Month>04</Month><Day>04</Day></DateCompleted><DateRevised><Year>2013</Year><Month>10</Month><Day>02</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0016-6731</ISSN><JournalIssue CitedMedium="Print"><Volume>124</Volume><Issue>1</Issue><PubDate><Year>1990</Year><Month>Jan</Month></PubDate></JournalIssue><Title>Genetics</Title><ISOAbbreviation>Genetics</ISOAbbreviation></Journal><ArticleTitle>Length heteroplasmy of sturgeon mitochondrial DNA: an illegitimate elongation model.</ArticleTitle><Pagination><MedlinePgn>157-63</MedlinePgn></Pagination><Abstract><AbstractText>Extensive length polymorphism and heteroplasmy (multiple forms within an individual) of the D-loop region are observed in mitochondrial DNA of the white sturgeon (Acipenser transmontanus). The nucleotide sequence of this region, for both a short and a long form, shows that the differences are due to variable numbers of a perfect 82-bp direct repeat. We propose a model for the replicative origin of length differences, involving a competitive equilibrium between the heavy strand and the D-loop strand. This model suggests that frequent misalignment in the repeat region prior to elongation, facilitated by a stable secondary structure in the displaced strand, can explain both the polymorphism and heteroplasmy in this species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Buroker</LastName><ForeName>N E</ForeName><Initials>NE</Initials><AffiliationInfo><Affiliation>School of Medicine, Department of Pediatrics, University of Washington, Seattle 98195.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Brown</LastName><ForeName>J R</ForeName><Initials>JR</Initials></Author><Author ValidYN="Y"><LastName>Gilbert</LastName><ForeName>T A</ForeName><Initials>TA</Initials></Author><Author ValidYN="Y"><LastName>O'Hara</LastName><ForeName>P J</ForeName><Initials>PJ</Initials></Author><Author ValidYN="Y"><LastName>Beckenbach</LastName><ForeName>A T</ForeName><Initials>AT</Initials></Author><Author ValidYN="Y"><LastName>Thomas</LastName><ForeName>W K</ForeName><Initials>WK</Initials></Author><Author ValidYN="Y"><LastName>Smith</LastName><ForeName>M J</ForeName><Initials>MJ</Initials></Author></AuthorList><Language>eng</Language><DataBankList CompleteYN="Y"><DataBank><DataBankName>GENBANK</DataBankName><AccessionNumberList><AccessionNumber>X54348</AccessionNumber></AccessionNumberList></DataBank></DataBankList><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Genetics</MedlineTA><NlmUniqueID>0374636</NlmUniqueID><ISSNLinking>0016-6731</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004272">DNA, 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