Characterization of Sox9 in European Atlantic sturgeon (Acipenser sturio).
Identifieur interne : 000541 ( PubMed/Corpus ); précédent : 000540; suivant : 000542Characterization of Sox9 in European Atlantic sturgeon (Acipenser sturio).
Auteurs : A K Hett ; C. Pitra ; I. Jenneckens ; A. LudwigSource :
- The Journal of heredity [ 0022-1503 ]
English descriptors
- KwdEn :
- Amino Acid Sequence, Animals, Base Sequence, Cluster Analysis, DNA Primers, Fishes (genetics), France, Gene Components, High Mobility Group Proteins (genetics), Likelihood Functions, Models, Genetic, Molecular Sequence Data, Phylogeny, Rivers, SOX9 Transcription Factor, Selection, Genetic, Sequence Analysis, DNA, Sequence Homology, Transcription Factors (genetics).
- MESH :
- chemical , genetics : High Mobility Group Proteins, Transcription Factors.
- chemical : DNA Primers, SOX9 Transcription Factor.
- geographic : France.
- genetics : Fishes.
- Amino Acid Sequence, Animals, Base Sequence, Cluster Analysis, Gene Components, Likelihood Functions, Models, Genetic, Molecular Sequence Data, Phylogeny, Rivers, Selection, Genetic, Sequence Analysis, DNA, Sequence Homology.
Abstract
The Sox9 gene of Acipenser sturio, one of the most primitive vertebrates, was analyzed. No sex-specific differences were observed. Sturgeon Sox9 consists of three exons and two introns with completely conserved exon-intron boundaries showing high levels of homology to other vertebrate Sox9 sequences, especially in the N-terminus region containing the HMG box. We found strong evidence for negative (purifying) selection. In contrast to previous studies of other fishes, we observed no evidence for gene duplication in sturgeon. Phylogenetic analyses of Sox9 evolution revealed a basal position for sturgeon Sox9.
DOI: 10.1093/jhered/esi008
PubMed: 15710905
Links to Exploration step
pubmed:15710905Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Characterization of Sox9 in European Atlantic sturgeon (Acipenser sturio).</title>
<author><name sortKey="Hett, A K" sort="Hett, A K" uniqKey="Hett A" first="A K" last="Hett">A K Hett</name>
<affiliation><nlm:affiliation>Department of Evolutionary Genetics, Leibniz-Institute for Zoo and Wildlife Research, Alfred-Kowalke-Strasse 17, 10315 Berlin, Germany.</nlm:affiliation>
</affiliation>
</author>
<author><name sortKey="Pitra, C" sort="Pitra, C" uniqKey="Pitra C" first="C" last="Pitra">C. Pitra</name>
</author>
<author><name sortKey="Jenneckens, I" sort="Jenneckens, I" uniqKey="Jenneckens I" first="I" last="Jenneckens">I. Jenneckens</name>
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<author><name sortKey="Ludwig, A" sort="Ludwig, A" uniqKey="Ludwig A" first="A" last="Ludwig">A. Ludwig</name>
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<sourceDesc><biblStruct><analytic><title xml:lang="en">Characterization of Sox9 in European Atlantic sturgeon (Acipenser sturio).</title>
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<affiliation><nlm:affiliation>Department of Evolutionary Genetics, Leibniz-Institute for Zoo and Wildlife Research, Alfred-Kowalke-Strasse 17, 10315 Berlin, Germany.</nlm:affiliation>
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<author><name sortKey="Pitra, C" sort="Pitra, C" uniqKey="Pitra C" first="C" last="Pitra">C. Pitra</name>
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<author><name sortKey="Jenneckens, I" sort="Jenneckens, I" uniqKey="Jenneckens I" first="I" last="Jenneckens">I. Jenneckens</name>
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<series><title level="j">The Journal of heredity</title>
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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Animals</term>
<term>Base Sequence</term>
<term>Cluster Analysis</term>
<term>DNA Primers</term>
<term>Fishes (genetics)</term>
<term>France</term>
<term>Gene Components</term>
<term>High Mobility Group Proteins (genetics)</term>
<term>Likelihood Functions</term>
<term>Models, Genetic</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Rivers</term>
<term>SOX9 Transcription Factor</term>
<term>Selection, Genetic</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology</term>
<term>Transcription Factors (genetics)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>High Mobility Group Proteins</term>
<term>Transcription Factors</term>
</keywords>
<keywords scheme="MESH" type="chemical" xml:lang="en"><term>DNA Primers</term>
<term>SOX9 Transcription Factor</term>
</keywords>
<keywords scheme="MESH" type="geographic" xml:lang="en"><term>France</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fishes</term>
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<keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term>
<term>Animals</term>
<term>Base Sequence</term>
<term>Cluster Analysis</term>
<term>Gene Components</term>
<term>Likelihood Functions</term>
<term>Models, Genetic</term>
<term>Molecular Sequence Data</term>
<term>Phylogeny</term>
<term>Rivers</term>
<term>Selection, Genetic</term>
<term>Sequence Analysis, DNA</term>
<term>Sequence Homology</term>
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<front><div type="abstract" xml:lang="en">The Sox9 gene of Acipenser sturio, one of the most primitive vertebrates, was analyzed. No sex-specific differences were observed. Sturgeon Sox9 consists of three exons and two introns with completely conserved exon-intron boundaries showing high levels of homology to other vertebrate Sox9 sequences, especially in the N-terminus region containing the HMG box. We found strong evidence for negative (purifying) selection. In contrast to previous studies of other fishes, we observed no evidence for gene duplication in sturgeon. Phylogenetic analyses of Sox9 evolution revealed a basal position for sturgeon Sox9.</div>
</front>
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<Month>04</Month>
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<DateRevised><Year>2009</Year>
<Month>11</Month>
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<Article PubModel="Print"><Journal><ISSN IssnType="Print">0022-1503</ISSN>
<JournalIssue CitedMedium="Print"><Volume>96</Volume>
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<PubDate><MedlineDate>2005 Mar-Apr</MedlineDate>
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<Title>The Journal of heredity</Title>
<ISOAbbreviation>J. Hered.</ISOAbbreviation>
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<ArticleTitle>Characterization of Sox9 in European Atlantic sturgeon (Acipenser sturio).</ArticleTitle>
<Pagination><MedlinePgn>150-4</MedlinePgn>
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<Abstract><AbstractText>The Sox9 gene of Acipenser sturio, one of the most primitive vertebrates, was analyzed. No sex-specific differences were observed. Sturgeon Sox9 consists of three exons and two introns with completely conserved exon-intron boundaries showing high levels of homology to other vertebrate Sox9 sequences, especially in the N-terminus region containing the HMG box. We found strong evidence for negative (purifying) selection. In contrast to previous studies of other fishes, we observed no evidence for gene duplication in sturgeon. Phylogenetic analyses of Sox9 evolution revealed a basal position for sturgeon Sox9.</AbstractText>
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<ForeName>A K</ForeName>
<Initials>AK</Initials>
<AffiliationInfo><Affiliation>Department of Evolutionary Genetics, Leibniz-Institute for Zoo and Wildlife Research, Alfred-Kowalke-Strasse 17, 10315 Berlin, Germany.</Affiliation>
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