Revised phylogenetic relationships among herpesviruses isolated from sturgeons.
Identifieur interne : 000465 ( PubMed/Corpus ); précédent : 000464; suivant : 000466Revised phylogenetic relationships among herpesviruses isolated from sturgeons.
Auteurs : Tomofumi Kurobe ; Garry O. Kelley ; Thomas B. Waltzek ; Ronald P. HedrickSource :
- Journal of aquatic animal health [ 0899-7659 ] ; 2008.
English descriptors
- KwdEn :
- Amphibians (virology), Animals, Cell Line, DNA-Directed DNA Polymerase (genetics), Endodeoxyribonucleases (genetics), Fish Diseases (virology), Fishes (virology), Herpesviridae (classification), Herpesviridae (enzymology), Herpesviridae (genetics), Herpesviridae (isolation & purification), Phylogeny, Viral Proteins (genetics).
- MESH :
- chemical , genetics : DNA-Directed DNA Polymerase, Endodeoxyribonucleases, Viral Proteins.
- classification : Herpesviridae.
- enzymology : Herpesviridae.
- genetics : Herpesviridae.
- isolation & purification : Herpesviridae.
- virology : Amphibians, Fish Diseases, Fishes.
- Animals, Cell Line, Phylogeny.
Abstract
Initial phylogenetic comparisons based on a region of the DNA polymerase of seven herpes-like viruses found in sturgeons in North America and Europe indicated the presence of three distinct clades. A revised phylogenetic analysis of the same viruses, based on corrected DNA polymerase sequences and newly obtained sequence data from the putative ATP subunit of the terminase gene, indicate only two clades. These two clades correspond to the historical designations given to these herpes-like viruses from white sturgeon Acipenser transmontanus: white sturgeon herpesvirus type 1 (WSHV-1) and type 2 (WSHV-2). The identification of putative terminase gene sequences for all seven herpes-like viruses from sturgeons confirms their affinity with the family Herpesviridae (because this gene is unique to herpesviruses) and more distantly with T4-like bacteriophages. The two clades of sturgeon herpesviruses are therefore appropriately designated as Acipenserid herpesviruses 1 and 2, which correspond to the previous common names of white sturgeon herpesvirus types 1 and 2.
DOI: 10.1577/H07-028.1
PubMed: 18783130
Links to Exploration step
pubmed:18783130Le document en format XML
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Hedrick</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2008">2008</date><idno type="RBID">pubmed:18783130</idno><idno type="pmid">18783130</idno><idno type="doi">10.1577/H07-028.1</idno><idno type="wicri:Area/PubMed/Corpus">000465</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000465</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Revised phylogenetic relationships among herpesviruses isolated from sturgeons.</title><author><name sortKey="Kurobe, Tomofumi" sort="Kurobe, Tomofumi" uniqKey="Kurobe T" first="Tomofumi" last="Kurobe">Tomofumi Kurobe</name><affiliation><nlm:affiliation>Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.</nlm:affiliation></affiliation></author><author><name sortKey="Kelley, Garry O" sort="Kelley, Garry O" uniqKey="Kelley G" first="Garry O" last="Kelley">Garry O. Kelley</name></author><author><name sortKey="Waltzek, Thomas B" sort="Waltzek, Thomas B" uniqKey="Waltzek T" first="Thomas B" last="Waltzek">Thomas B. Waltzek</name></author><author><name sortKey="Hedrick, Ronald P" sort="Hedrick, Ronald P" uniqKey="Hedrick R" first="Ronald P" last="Hedrick">Ronald P. 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A revised phylogenetic analysis of the same viruses, based on corrected DNA polymerase sequences and newly obtained sequence data from the putative ATP subunit of the terminase gene, indicate only two clades. These two clades correspond to the historical designations given to these herpes-like viruses from white sturgeon Acipenser transmontanus: white sturgeon herpesvirus type 1 (WSHV-1) and type 2 (WSHV-2). The identification of putative terminase gene sequences for all seven herpes-like viruses from sturgeons confirms their affinity with the family Herpesviridae (because this gene is unique to herpesviruses) and more distantly with T4-like bacteriophages. The two clades of sturgeon herpesviruses are therefore appropriately designated as Acipenserid herpesviruses 1 and 2, which correspond to the previous common names of white sturgeon herpesvirus types 1 and 2.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">18783130</PMID><DateCreated><Year>2008</Year><Month>09</Month><Day>11</Day></DateCreated><DateCompleted><Year>2008</Year><Month>10</Month><Day>31</Day></DateCompleted><DateRevised><Year>2008</Year><Month>11</Month><Day>21</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0899-7659</ISSN><JournalIssue CitedMedium="Print"><Volume>20</Volume><Issue>2</Issue><PubDate><Year>2008</Year><Month>Jun</Month></PubDate></JournalIssue><Title>Journal of aquatic animal health</Title><ISOAbbreviation>J. Aquat. Anim. Health</ISOAbbreviation></Journal><ArticleTitle>Revised phylogenetic relationships among herpesviruses isolated from sturgeons.</ArticleTitle><Pagination><MedlinePgn>96-102</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1577/H07-028.1</ELocationID><Abstract><AbstractText>Initial phylogenetic comparisons based on a region of the DNA polymerase of seven herpes-like viruses found in sturgeons in North America and Europe indicated the presence of three distinct clades. A revised phylogenetic analysis of the same viruses, based on corrected DNA polymerase sequences and newly obtained sequence data from the putative ATP subunit of the terminase gene, indicate only two clades. These two clades correspond to the historical designations given to these herpes-like viruses from white sturgeon Acipenser transmontanus: white sturgeon herpesvirus type 1 (WSHV-1) and type 2 (WSHV-2). The identification of putative terminase gene sequences for all seven herpes-like viruses from sturgeons confirms their affinity with the family Herpesviridae (because this gene is unique to herpesviruses) and more distantly with T4-like bacteriophages. The two clades of sturgeon herpesviruses are therefore appropriately designated as Acipenserid herpesviruses 1 and 2, which correspond to the previous common names of white sturgeon herpesvirus types 1 and 2.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Kurobe</LastName><ForeName>Tomofumi</ForeName><Initials>T</Initials><AffiliationInfo><Affiliation>Department of Medicine and Epidemiology, School of Veterinary Medicine, University of California, Davis, CA 95616, USA.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kelley</LastName><ForeName>Garry O</ForeName><Initials>GO</Initials></Author><Author ValidYN="Y"><LastName>Waltzek</LastName><ForeName>Thomas B</ForeName><Initials>TB</Initials></Author><Author ValidYN="Y"><LastName>Hedrick</LastName><ForeName>Ronald P</ForeName><Initials>RP</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>J Aquat Anim Health</MedlineTA><NlmUniqueID>9884881</NlmUniqueID><ISSNLinking>0899-7659</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014764">Viral Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 2.7.7.7</RegistryNumber><NameOfSubstance UI="D004259">DNA-Directed DNA Polymerase</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.1.-</RegistryNumber><NameOfSubstance UI="D004706">Endodeoxyribonucleases</NameOfSubstance></Chemical><Chemical><RegistryNumber>EC 3.1.-</RegistryNumber><NameOfSubstance UI="C030894">terminase</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000663" MajorTopicYN="N">Amphibians</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D002460" MajorTopicYN="N">Cell Line</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D004259" MajorTopicYN="N">DNA-Directed DNA Polymerase</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004706" MajorTopicYN="N">Endodeoxyribonucleases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005393" MajorTopicYN="N">Fish Diseases</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="N">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D005399" MajorTopicYN="N">Fishes</DescriptorName><QualifierName UI="Q000821" MajorTopicYN="Y">virology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006564" MajorTopicYN="N">Herpesviridae</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000201" MajorTopicYN="N">enzymology</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="Y">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014764" MajorTopicYN="N">Viral Proteins</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2008</Year><Month>9</Month><Day>12</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2008</Year><Month>11</Month><Day>1</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2008</Year><Month>9</Month><Day>12</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">18783130</ArticleId><ArticleId IdType="doi">10.1577/H07-028.1</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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