Managing polyploidy in ex situ conservation genetics: the case of the critically endangered Adriatic sturgeon (Acipenser naccarii).
Identifieur interne : 000361 ( PubMed/Corpus ); précédent : 000360; suivant : 000362Managing polyploidy in ex situ conservation genetics: the case of the critically endangered Adriatic sturgeon (Acipenser naccarii).
Auteurs : Leonardo Congiu ; Jose Martin Pujolar ; Anna Forlani ; Silvia Cenadelli ; Isabelle Dupanloup ; Federica Barbisan ; Andrea Galli ; Francesco FontanaSource :
- PloS one [ 1932-6203 ] ; 2011.
English descriptors
- KwdEn :
- MESH :
Abstract
While the current expansion of conservation genetics enables to address more efficiently the management of threatened species, alternative methods for genetic relatedness data analysis in polyploid species are necessary. Within this framework, we present a standardized and simple protocol specifically designed for polyploid species that can facilitate management of genetic diversity, as exemplified by the ex situ conservation program for the tetraploid Adriatic sturgeon Acipenser naccarii. A critically endangered endemic species of the Adriatic Sea tributaries, its persistence is strictly linked to the ex situ conservation of a single captive broodstock currently decimated to about 25 individuals, which represents the last remaining population of Adriatic sturgeon of certain wild origin. The genetic variability of three F1 broodstocks available as future breeders was estimated based on mitochondrial and microsatellite information and compared with the variability of the parental generation. Genetic data showed that the F1 stocks have only retained part of the genetic variation present in the original stock due to the few parent pairs used as founders. This prompts for the urgent improvement of the current F1 stocks by incorporating new founders that better represent the genetic diversity available. Following parental allocation based on band sharing values, we set up a user-friendly tool for selection of candidate breeders according to relatedness between all possible parent-pairs that secures the use of non-related individuals. The approach developed here could also be applied to other endangered tetraploid sturgeon species overexploited for caviar production, particularly in regions lacking proper infrastructure and/or expertise.
DOI: 10.1371/journal.pone.0018249
PubMed: 21483472
Links to Exploration step
pubmed:21483472Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Managing polyploidy in ex situ conservation genetics: the case of the critically endangered Adriatic sturgeon (Acipenser naccarii).</title><author><name sortKey="Congiu, Leonardo" sort="Congiu, Leonardo" uniqKey="Congiu L" first="Leonardo" last="Congiu">Leonardo Congiu</name><affiliation><nlm:affiliation>Dipartimento di Biologia, Università di Padova, Padova, Italy. leonardo.congiu@unipd.it</nlm:affiliation></affiliation></author><author><name sortKey="Pujolar, Jose Martin" sort="Pujolar, Jose Martin" uniqKey="Pujolar J" first="Jose Martin" last="Pujolar">Jose Martin Pujolar</name></author><author><name sortKey="Forlani, Anna" sort="Forlani, Anna" uniqKey="Forlani A" first="Anna" last="Forlani">Anna Forlani</name></author><author><name sortKey="Cenadelli, Silvia" sort="Cenadelli, Silvia" uniqKey="Cenadelli S" first="Silvia" last="Cenadelli">Silvia Cenadelli</name></author><author><name sortKey="Dupanloup, Isabelle" sort="Dupanloup, Isabelle" uniqKey="Dupanloup I" first="Isabelle" last="Dupanloup">Isabelle Dupanloup</name></author><author><name sortKey="Barbisan, Federica" sort="Barbisan, Federica" uniqKey="Barbisan F" first="Federica" last="Barbisan">Federica Barbisan</name></author><author><name sortKey="Galli, Andrea" sort="Galli, Andrea" uniqKey="Galli A" first="Andrea" last="Galli">Andrea Galli</name></author><author><name sortKey="Fontana, Francesco" sort="Fontana, Francesco" uniqKey="Fontana F" first="Francesco" last="Fontana">Francesco Fontana</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2011">2011</date><idno type="RBID">pubmed:21483472</idno><idno type="pmid">21483472</idno><idno type="doi">10.1371/journal.pone.0018249</idno><idno type="wicri:Area/PubMed/Corpus">000361</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000361</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Managing polyploidy in ex situ conservation genetics: the case of the critically endangered Adriatic sturgeon (Acipenser naccarii).</title><author><name sortKey="Congiu, Leonardo" sort="Congiu, Leonardo" uniqKey="Congiu L" first="Leonardo" last="Congiu">Leonardo Congiu</name><affiliation><nlm:affiliation>Dipartimento di Biologia, Università di Padova, Padova, Italy. leonardo.congiu@unipd.it</nlm:affiliation></affiliation></author><author><name sortKey="Pujolar, Jose Martin" sort="Pujolar, Jose Martin" uniqKey="Pujolar J" first="Jose Martin" last="Pujolar">Jose Martin Pujolar</name></author><author><name sortKey="Forlani, Anna" sort="Forlani, Anna" uniqKey="Forlani A" first="Anna" last="Forlani">Anna Forlani</name></author><author><name sortKey="Cenadelli, Silvia" sort="Cenadelli, Silvia" uniqKey="Cenadelli S" first="Silvia" last="Cenadelli">Silvia Cenadelli</name></author><author><name sortKey="Dupanloup, Isabelle" sort="Dupanloup, Isabelle" uniqKey="Dupanloup I" first="Isabelle" last="Dupanloup">Isabelle Dupanloup</name></author><author><name sortKey="Barbisan, Federica" sort="Barbisan, Federica" uniqKey="Barbisan F" first="Federica" last="Barbisan">Federica Barbisan</name></author><author><name sortKey="Galli, Andrea" sort="Galli, Andrea" uniqKey="Galli A" first="Andrea" last="Galli">Andrea Galli</name></author><author><name sortKey="Fontana, Francesco" sort="Fontana, Francesco" uniqKey="Fontana F" first="Francesco" last="Fontana">Francesco Fontana</name></author></analytic><series><title level="j">PloS one</title><idno type="eISSN">1932-6203</idno><imprint><date when="2011" type="published">2011</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Conservation of Natural Resources</term><term>Fishes (genetics)</term><term>Genetic Variation</term><term>Microsatellite Repeats (genetics)</term><term>Polyploidy</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fishes</term><term>Microsatellite Repeats</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Conservation of Natural Resources</term><term>Genetic Variation</term><term>Polyploidy</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">While the current expansion of conservation genetics enables to address more efficiently the management of threatened species, alternative methods for genetic relatedness data analysis in polyploid species are necessary. Within this framework, we present a standardized and simple protocol specifically designed for polyploid species that can facilitate management of genetic diversity, as exemplified by the ex situ conservation program for the tetraploid Adriatic sturgeon Acipenser naccarii. A critically endangered endemic species of the Adriatic Sea tributaries, its persistence is strictly linked to the ex situ conservation of a single captive broodstock currently decimated to about 25 individuals, which represents the last remaining population of Adriatic sturgeon of certain wild origin. The genetic variability of three F1 broodstocks available as future breeders was estimated based on mitochondrial and microsatellite information and compared with the variability of the parental generation. Genetic data showed that the F1 stocks have only retained part of the genetic variation present in the original stock due to the few parent pairs used as founders. This prompts for the urgent improvement of the current F1 stocks by incorporating new founders that better represent the genetic diversity available. Following parental allocation based on band sharing values, we set up a user-friendly tool for selection of candidate breeders according to relatedness between all possible parent-pairs that secures the use of non-related individuals. The approach developed here could also be applied to other endangered tetraploid sturgeon species overexploited for caviar production, particularly in regions lacking proper infrastructure and/or expertise.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21483472</PMID><DateCreated><Year>2011</Year><Month>04</Month><Day>12</Day></DateCreated><DateCompleted><Year>2011</Year><Month>08</Month><Day>25</Day></DateCompleted><DateRevised><Year>2015</Year><Month>02</Month><Day>04</Day></DateRevised><Article PubModel="Electronic"><Journal><ISSN IssnType="Electronic">1932-6203</ISSN><JournalIssue CitedMedium="Internet"><Volume>6</Volume><Issue>3</Issue><PubDate><Year>2011</Year><Month>Mar</Month><Day>29</Day></PubDate></JournalIssue><Title>PloS one</Title><ISOAbbreviation>PLoS ONE</ISOAbbreviation></Journal><ArticleTitle>Managing polyploidy in ex situ conservation genetics: the case of the critically endangered Adriatic sturgeon (Acipenser naccarii).</ArticleTitle><Pagination><MedlinePgn>e18249</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1371/journal.pone.0018249</ELocationID><Abstract><AbstractText>While the current expansion of conservation genetics enables to address more efficiently the management of threatened species, alternative methods for genetic relatedness data analysis in polyploid species are necessary. Within this framework, we present a standardized and simple protocol specifically designed for polyploid species that can facilitate management of genetic diversity, as exemplified by the ex situ conservation program for the tetraploid Adriatic sturgeon Acipenser naccarii. A critically endangered endemic species of the Adriatic Sea tributaries, its persistence is strictly linked to the ex situ conservation of a single captive broodstock currently decimated to about 25 individuals, which represents the last remaining population of Adriatic sturgeon of certain wild origin. The genetic variability of three F1 broodstocks available as future breeders was estimated based on mitochondrial and microsatellite information and compared with the variability of the parental generation. Genetic data showed that the F1 stocks have only retained part of the genetic variation present in the original stock due to the few parent pairs used as founders. This prompts for the urgent improvement of the current F1 stocks by incorporating new founders that better represent the genetic diversity available. Following parental allocation based on band sharing values, we set up a user-friendly tool for selection of candidate breeders according to relatedness between all possible parent-pairs that secures the use of non-related individuals. The approach developed here could also be applied to other endangered tetraploid sturgeon species overexploited for caviar production, particularly in regions lacking proper infrastructure and/or expertise.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Congiu</LastName><ForeName>Leonardo</ForeName><Initials>L</Initials><AffiliationInfo><Affiliation>Dipartimento di Biologia, Università di Padova, Padova, Italy. leonardo.congiu@unipd.it</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Pujolar</LastName><ForeName>Jose Martin</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Forlani</LastName><ForeName>Anna</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Cenadelli</LastName><ForeName>Silvia</ForeName><Initials>S</Initials></Author><Author ValidYN="Y"><LastName>Dupanloup</LastName><ForeName>Isabelle</ForeName><Initials>I</Initials></Author><Author ValidYN="Y"><LastName>Barbisan</LastName><ForeName>Federica</ForeName><Initials>F</Initials></Author><Author ValidYN="Y"><LastName>Galli</LastName><ForeName>Andrea</ForeName><Initials>A</Initials></Author><Author ValidYN="Y"><LastName>Fontana</LastName><ForeName>Francesco</ForeName><Initials>F</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>03</Month><Day>29</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>PLoS One</MedlineTA><NlmUniqueID>101285081</NlmUniqueID><ISSNLinking>1932-6203</ISSNLinking></MedlineJournalInfo><CitationSubset>IM</CitationSubset><CommentsCorrectionsList><CommentsCorrections RefType="Cites"><RefSource>Mol Ecol. 2000 Oct;9(10):1657-9</RefSource><PMID Version="1">11050560</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genetics. 2000 Dec;156(4):1933-47</RefSource><PMID Version="1">11102385</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genetica. 2001;111(1-3):359-73</RefSource><PMID Version="1">11841180</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Ecol. 2003 Dec;12(12):3253-64</RefSource><PMID Version="1">14629343</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Ecol. 2004 Sep;13(9):2829-40</RefSource><PMID Version="1">15315693</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Bioinformatics. 2009 Jun 1;25(11):1451-2</RefSource><PMID Version="1">19346325</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Genetics. 1992 Oct;132(2):619-33</RefSource><PMID Version="1">1385266</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Nucleic Acids Res. 1994 Nov 11;22(22):4673-80</RefSource><PMID Version="1">7984417</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Ecol. 2005 Feb;14(2):441-56</RefSource><PMID Version="1">15660936</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Mol Ecol. 2006 Jun;15(7):1769-80</RefSource><PMID Version="1">16689897</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>BMC Evol Biol. 2008;8:221</RefSource><PMID Version="1">18664258</PMID></CommentsCorrections><CommentsCorrections RefType="Cites"><RefSource>Nat Rev Genet. 2004 Sep;5(9):702-12</RefSource><PMID Version="1">15372093</PMID></CommentsCorrections></CommentsCorrectionsList><MeshHeadingList><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D003247" MajorTopicYN="N">Conservation of Natural Resources</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005399" MajorTopicYN="N">Fishes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D014644" MajorTopicYN="N">Genetic Variation</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018895" MajorTopicYN="N">Microsatellite Repeats</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D011123" MajorTopicYN="Y">Polyploidy</DescriptorName></MeshHeading></MeshHeadingList><OtherID Source="NLM">PMC3066226</OtherID></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2010</Year><Month>10</Month><Day>25</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2011</Year><Month>03</Month><Day>01</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>4</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2011</Year><Month>4</Month><Day>13</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2011</Year><Month>8</Month><Day>27</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">21483472</ArticleId><ArticleId IdType="doi">10.1371/journal.pone.0018249</ArticleId><ArticleId IdType="pmc">PMC3066226</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Eau/explor/EsturgeonV1/Data/PubMed/Corpus
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000361 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd -nk 000361 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Eau
|area= EsturgeonV1
|flux= PubMed
|étape= Corpus
|type= RBID
|clé= pubmed:21483472
|texte= Managing polyploidy in ex situ conservation genetics: the case of the critically endangered Adriatic sturgeon (Acipenser naccarii).
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/PubMed/Corpus/RBID.i -Sk "pubmed:21483472" \
| HfdSelect -Kh $EXPLOR_AREA/Data/PubMed/Corpus/biblio.hfd \
| NlmPubMed2Wicri -a EsturgeonV1
| This area was generated with Dilib version V0.6.27. |  |