High-throughput SNP-genotyping analysis of the relationships among Ponto-Caspian sturgeon species.
Identifieur interne : 000250 ( PubMed/Corpus ); précédent : 000249; suivant : 000251High-throughput SNP-genotyping analysis of the relationships among Ponto-Caspian sturgeon species.
Auteurs : Sergey M. Rastorguev ; Artem V. Nedoluzhko ; Alexander M. Mazur ; Natalia M. Gruzdeva ; Alexander A. Volkov ; Anna E. Barmintseva ; Nikolai S. Mugue ; Egor B. ProkhortchoukSource :
- Ecology and evolution ; 2013.
Abstract
Legally certified sturgeon fisheries require population protection and conservation methods, including DNA tests to identify the source of valuable sturgeon roe. However, the available genetic data are insufficient to distinguish between different sturgeon populations, and are even unable to distinguish between some species. We performed high-throughput single-nucleotide polymorphism (SNP)-genotyping analysis on different populations of Russian (Acipenser gueldenstaedtii), Persian (A. persicus), and Siberian (A. baerii) sturgeon species from the Caspian Sea region (Volga and Ural Rivers), the Azov Sea, and two Siberian rivers. We found that Russian sturgeons from the Volga and Ural Rivers were essentially indistinguishable, but they differed from Russian sturgeons in the Azov Sea, and from Persian and Siberian sturgeons. We identified eight SNPs that were sufficient to distinguish these sturgeon populations with 80% confidence, and allowed the development of markers to distinguish sturgeon species. Finally, on the basis of our SNP data, we propose that the A. baerii-like mitochondrial DNA found in some Russian sturgeons from the Caspian Sea arose via an introgression event during the Pleistocene glaciation. In the present study, the high-throughput genotyping analysis of several sturgeon populations was performed. SNP markers for species identification were defined. The possible explanation of the baerii-like mitotype presence in some Russian sturgeons in the Caspian Sea was suggested.
DOI: 10.1002/ece3.659
PubMed: 24567827
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Rastorguev</name><affiliation><nlm:affiliation>National Research Center "Kurchatov Institute" Kurchatov sq. 1, 123182, Moscow, Russia ; Russian Federal Research Institute of Fisheries and Oceanography (VNIRO) V. Krasnoselskaya str. 17, 107140, Moscow, Russia.</nlm:affiliation></affiliation></author><author><name sortKey="Nedoluzhko, Artem V" sort="Nedoluzhko, Artem V" uniqKey="Nedoluzhko A" first="Artem V" last="Nedoluzhko">Artem V. Nedoluzhko</name><affiliation><nlm:affiliation>National Research Center "Kurchatov Institute" Kurchatov sq. 1, 123182, Moscow, Russia.</nlm:affiliation></affiliation></author><author><name sortKey="Mazur, Alexander M" sort="Mazur, Alexander M" uniqKey="Mazur A" first="Alexander M" last="Mazur">Alexander M. 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Barmintseva</name><affiliation><nlm:affiliation>Russian Federal Research Institute of Fisheries and Oceanography (VNIRO) V. Krasnoselskaya str. 17, 107140, Moscow, Russia.</nlm:affiliation></affiliation></author><author><name sortKey="Mugue, Nikolai S" sort="Mugue, Nikolai S" uniqKey="Mugue N" first="Nikolai S" last="Mugue">Nikolai S. Mugue</name><affiliation><nlm:affiliation>Russian Federal Research Institute of Fisheries and Oceanography (VNIRO) V. Krasnoselskaya str. 17, 107140, Moscow, Russia.</nlm:affiliation></affiliation></author><author><name sortKey="Prokhortchouk, Egor B" sort="Prokhortchouk, Egor B" uniqKey="Prokhortchouk E" first="Egor B" last="Prokhortchouk">Egor B. Prokhortchouk</name><affiliation><nlm:affiliation>National Research Center "Kurchatov Institute" Kurchatov sq. 1, 123182, Moscow, Russia ; Center of Bioengineering, Russian Academy of Sciences 60-letiya Oktyabrya av. 7-1, 117312, Moscow, Russia.</nlm:affiliation></affiliation></author></analytic><series><title level="j">Ecology and evolution</title><imprint><date when="2013" type="published">2013</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Legally certified sturgeon fisheries require population protection and conservation methods, including DNA tests to identify the source of valuable sturgeon roe. However, the available genetic data are insufficient to distinguish between different sturgeon populations, and are even unable to distinguish between some species. We performed high-throughput single-nucleotide polymorphism (SNP)-genotyping analysis on different populations of Russian (Acipenser gueldenstaedtii), Persian (A. persicus), and Siberian (A. baerii) sturgeon species from the Caspian Sea region (Volga and Ural Rivers), the Azov Sea, and two Siberian rivers. We found that Russian sturgeons from the Volga and Ural Rivers were essentially indistinguishable, but they differed from Russian sturgeons in the Azov Sea, and from Persian and Siberian sturgeons. We identified eight SNPs that were sufficient to distinguish these sturgeon populations with 80% confidence, and allowed the development of markers to distinguish sturgeon species. Finally, on the basis of our SNP data, we propose that the A. baerii-like mitochondrial DNA found in some Russian sturgeons from the Caspian Sea arose via an introgression event during the Pleistocene glaciation. In the present study, the high-throughput genotyping analysis of several sturgeon populations was performed. SNP markers for species identification were defined. The possible explanation of the baerii-like mitotype presence in some Russian sturgeons in the Caspian Sea was suggested.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">24567827</PMID><DateCreated><Year>2014</Year><Month>02</Month><Day>25</Day></DateCreated><DateCompleted><Year>2014</Year><Month>02</Month><Day>25</Day></DateCompleted><DateRevised><Year>2014</Year><Month>03</Month><Day>03</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><JournalIssue CitedMedium="Print"><Volume>3</Volume><Issue>8</Issue><PubDate><Year>2013</Year><Month>Aug</Month></PubDate></JournalIssue><Title>Ecology and evolution</Title><ISOAbbreviation>Ecol Evol</ISOAbbreviation></Journal><ArticleTitle>High-throughput SNP-genotyping analysis of the relationships among Ponto-Caspian sturgeon species.</ArticleTitle><Pagination><MedlinePgn>2612-8</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1002/ece3.659</ELocationID><Abstract><AbstractText>Legally certified sturgeon fisheries require population protection and conservation methods, including DNA tests to identify the source of valuable sturgeon roe. However, the available genetic data are insufficient to distinguish between different sturgeon populations, and are even unable to distinguish between some species. We performed high-throughput single-nucleotide polymorphism (SNP)-genotyping analysis on different populations of Russian (Acipenser gueldenstaedtii), Persian (A. persicus), and Siberian (A. baerii) sturgeon species from the Caspian Sea region (Volga and Ural Rivers), the Azov Sea, and two Siberian rivers. We found that Russian sturgeons from the Volga and Ural Rivers were essentially indistinguishable, but they differed from Russian sturgeons in the Azov Sea, and from Persian and Siberian sturgeons. We identified eight SNPs that were sufficient to distinguish these sturgeon populations with 80% confidence, and allowed the development of markers to distinguish sturgeon species. Finally, on the basis of our SNP data, we propose that the A. baerii-like mitochondrial DNA found in some Russian sturgeons from the Caspian Sea arose via an introgression event during the Pleistocene glaciation. In the present study, the high-throughput genotyping analysis of several sturgeon populations was performed. SNP markers for species identification were defined. The possible explanation of the baerii-like mitotype presence in some Russian sturgeons in the Caspian Sea was suggested.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Rastorguev</LastName><ForeName>Sergey M</ForeName><Initials>SM</Initials><AffiliationInfo><Affiliation>National Research Center "Kurchatov Institute" Kurchatov sq. 1, 123182, Moscow, Russia ; Russian Federal Research Institute of Fisheries and Oceanography (VNIRO) V. Krasnoselskaya str. 17, 107140, Moscow, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Nedoluzhko</LastName><ForeName>Artem V</ForeName><Initials>AV</Initials><AffiliationInfo><Affiliation>National Research Center "Kurchatov Institute" Kurchatov sq. 1, 123182, Moscow, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mazur</LastName><ForeName>Alexander M</ForeName><Initials>AM</Initials><AffiliationInfo><Affiliation>Center of Bioengineering, Russian Academy of Sciences 60-letiya Oktyabrya av. 7-1, 117312, Moscow, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gruzdeva</LastName><ForeName>Natalia M</ForeName><Initials>NM</Initials><AffiliationInfo><Affiliation>National Research Center "Kurchatov Institute" Kurchatov sq. 1, 123182, Moscow, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Volkov</LastName><ForeName>Alexander A</ForeName><Initials>AA</Initials><AffiliationInfo><Affiliation>Russian Federal Research Institute of Fisheries and Oceanography (VNIRO) V. Krasnoselskaya str. 17, 107140, Moscow, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Barmintseva</LastName><ForeName>Anna E</ForeName><Initials>AE</Initials><AffiliationInfo><Affiliation>Russian Federal Research Institute of Fisheries and Oceanography (VNIRO) V. Krasnoselskaya str. 17, 107140, Moscow, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Mugue</LastName><ForeName>Nikolai S</ForeName><Initials>NS</Initials><AffiliationInfo><Affiliation>Russian Federal Research Institute of Fisheries and Oceanography (VNIRO) V. Krasnoselskaya str. 17, 107140, Moscow, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Prokhortchouk</LastName><ForeName>Egor B</ForeName><Initials>EB</Initials><AffiliationInfo><Affiliation>National Research Center "Kurchatov Institute" Kurchatov sq. 1, 123182, Moscow, Russia ; Center of Bioengineering, Russian Academy of Sciences 60-letiya Oktyabrya av. 7-1, 117312, Moscow, Russia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2013</Year><Month>07</Month><Day>01</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Ecol Evol</MedlineTA><NlmUniqueID>101566408</NlmUniqueID><ISSNLinking>2045-7758</ISSNLinking></MedlineJournalInfo><OtherID Source="NLM">PMC3930046</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Genotyping</Keyword><Keyword MajorTopicYN="N">SNP</Keyword><Keyword MajorTopicYN="N">glaciation</Keyword><Keyword MajorTopicYN="N">population genetics</Keyword><Keyword MajorTopicYN="N">species relationships</Keyword><Keyword MajorTopicYN="N">sturgeon</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2013</Year><Month>03</Month><Day>28</Day></PubMedPubDate><PubMedPubDate PubStatus="revised"><Year>2013</Year><Month>05</Month><Day>30</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2013</Year><Month>05</Month><Day>31</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2014</Year><Month>2</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2014</Year><Month>2</Month><Day>26</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2014</Year><Month>2</Month><Day>26</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">24567827</ArticleId><ArticleId IdType="doi">10.1002/ece3.659</ArticleId><ArticleId IdType="pmc">PMC3930046</ArticleId></ArticleIdList></PubmedData></pubmed></record>Pour manipuler ce document sous Unix (Dilib)
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