Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting.
Identifieur interne : 000112 ( PubMed/Checkpoint ); précédent : 000111; suivant : 000113Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting.
Auteurs : Svetlana A. Romanenko [Russie] ; Larisa S. Biltueva [Russie] ; Natalya A. Serdyukova [Russie] ; Anastasia I. Kulemzina [Russie] ; Violetta R. Beklemisheva [Russie] ; Olga L. Gladkikh [Russie] ; Natalia A. Lemskaya [Russie] ; Elena A. Interesova [Russie] ; Marina A. Korentovich [Russie] ; Nadezhda V. Vorobieva [Russie] ; Alexander S. Graphodatsky [Russie] ; Vladimir A. Trifonov [Russie]Source :
- Molecular cytogenetics ; 2015.
Abstract
Acipenseriformes take a basal position among Actinopteri and demonstrate a striking ploidy variation among species. The sterlet (Acipenser ruthenus, Linnaeus, 1758; ARUT) is a diploid 120-chromosomal sturgeon distributed in Eurasian rivers from Danube to Enisey. Despite a high commercial value and a rapid population decline in the wild, many genomic characteristics of sterlet (as well as many other sturgeon species) have not been studied.
DOI: 10.1186/s13039-015-0194-8
PubMed: 26587056
Affiliations:
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Korentovich</name><affiliation wicri:level="1"><nlm:affiliation>Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Tyumen, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Tyumen</wicri:regionArea><wicri:noRegion>Tyumen</wicri:noRegion></affiliation></author><author><name sortKey="Vorobieva, Nadezhda V" sort="Vorobieva, Nadezhda V" uniqKey="Vorobieva N" first="Nadezhda V" last="Vorobieva">Nadezhda V. Vorobieva</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Graphodatsky, Alexander S" sort="Graphodatsky, Alexander S" uniqKey="Graphodatsky A" first="Alexander S" last="Graphodatsky">Alexander S. 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Romanenko</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Biltueva, Larisa S" sort="Biltueva, Larisa S" uniqKey="Biltueva L" first="Larisa S" last="Biltueva">Larisa S. Biltueva</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Serdyukova, Natalya A" sort="Serdyukova, Natalya A" uniqKey="Serdyukova N" first="Natalya A" last="Serdyukova">Natalya A. Serdyukova</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Kulemzina, Anastasia I" sort="Kulemzina, Anastasia I" uniqKey="Kulemzina A" first="Anastasia I" last="Kulemzina">Anastasia I. Kulemzina</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Beklemisheva, Violetta R" sort="Beklemisheva, Violetta R" uniqKey="Beklemisheva V" first="Violetta R" last="Beklemisheva">Violetta R. Beklemisheva</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Gladkikh, Olga L" sort="Gladkikh, Olga L" uniqKey="Gladkikh O" first="Olga L" last="Gladkikh">Olga L. Gladkikh</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Lemskaya, Natalia A" sort="Lemskaya, Natalia A" uniqKey="Lemskaya N" first="Natalia A" last="Lemskaya">Natalia A. Lemskaya</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Interesova, Elena A" sort="Interesova, Elena A" uniqKey="Interesova E" first="Elena A" last="Interesova">Elena A. Interesova</name><affiliation wicri:level="1"><nlm:affiliation>Novosibirsk Branch of the Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Novosibirsk, Russia ; Tomsk State University, Tomsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Novosibirsk Branch of the Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Novosibirsk, Russia ; Tomsk State University, Tomsk</wicri:regionArea><wicri:noRegion>Tomsk</wicri:noRegion></affiliation></author><author><name sortKey="Korentovich, Marina A" sort="Korentovich, Marina A" uniqKey="Korentovich M" first="Marina A" last="Korentovich">Marina A. Korentovich</name><affiliation wicri:level="1"><nlm:affiliation>Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Tyumen, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Tyumen</wicri:regionArea><wicri:noRegion>Tyumen</wicri:noRegion></affiliation></author><author><name sortKey="Vorobieva, Nadezhda V" sort="Vorobieva, Nadezhda V" uniqKey="Vorobieva N" first="Nadezhda V" last="Vorobieva">Nadezhda V. Vorobieva</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Graphodatsky, Alexander S" sort="Graphodatsky, Alexander S" uniqKey="Graphodatsky A" first="Alexander S" last="Graphodatsky">Alexander S. Graphodatsky</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author><author><name sortKey="Trifonov, Vladimir A" sort="Trifonov, Vladimir A" uniqKey="Trifonov V" first="Vladimir A" last="Trifonov">Vladimir A. Trifonov</name><affiliation wicri:level="1"><nlm:affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</nlm:affiliation><country xml:lang="fr">Russie</country><wicri:regionArea>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk</wicri:regionArea><wicri:noRegion>Novosibirsk</wicri:noRegion></affiliation></author></analytic><series><title level="j">Molecular cytogenetics</title><imprint><date when="2015" type="published">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Acipenseriformes take a basal position among Actinopteri and demonstrate a striking ploidy variation among species. The sterlet (Acipenser ruthenus, Linnaeus, 1758; ARUT) is a diploid 120-chromosomal sturgeon distributed in Eurasian rivers from Danube to Enisey. Despite a high commercial value and a rapid population decline in the wild, many genomic characteristics of sterlet (as well as many other sturgeon species) have not been studied.</div></front></TEI><pubmed><MedlineCitation Status="PubMed-not-MEDLINE" Owner="NLM"><PMID Version="1">26587056</PMID><DateCreated><Year>2015</Year><Month>11</Month><Day>20</Day></DateCreated><DateCompleted><Year>2015</Year><Month>11</Month><Day>20</Day></DateCompleted><DateRevised><Year>2015</Year><Month>12</Month><Day>14</Day></DateRevised><Article PubModel="Electronic-eCollection"><Journal><JournalIssue CitedMedium="Print"><Volume>8</Volume><PubDate><Year>2015</Year></PubDate></JournalIssue><Title>Molecular cytogenetics</Title><ISOAbbreviation>Mol Cytogenet</ISOAbbreviation></Journal><ArticleTitle>Segmental paleotetraploidy revealed in sterlet (Acipenser ruthenus) genome by chromosome painting.</ArticleTitle><Pagination><MedlinePgn>90</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1186/s13039-015-0194-8</ELocationID><Abstract><AbstractText Label="BACKGROUND" NlmCategory="BACKGROUND">Acipenseriformes take a basal position among Actinopteri and demonstrate a striking ploidy variation among species. The sterlet (Acipenser ruthenus, Linnaeus, 1758; ARUT) is a diploid 120-chromosomal sturgeon distributed in Eurasian rivers from Danube to Enisey. Despite a high commercial value and a rapid population decline in the wild, many genomic characteristics of sterlet (as well as many other sturgeon species) have not been studied.</AbstractText><AbstractText Label="RESULTS" NlmCategory="RESULTS">Cell lines from different tissues of 12 sterlet specimens from Siberian populations were established following an optimized protocol. Conventional cytogenetic studies supplemented with molecular cytogenetic investigations on obtained fibroblast cell lines allowed a detailed description of sterlet karyotype and a precise localization of 18S/28S and 5S ribosomal clusters. Localization of sturgeon specific HindIII repetitive elements revealed an increased concentration in the pericentromeric region of the acrocentric ARUT14, while the total sterlet repetitive DNA fraction (C0t30) produced bright signals on subtelomeric segments of small chromosomal elements. Chromosome and region specific probes ARUT1p, 5, 6, 7, 8 as well as 14 anonymous small sized chromosomes (probes A-N) generated by microdissection were applied in chromosome painting experiments. According to hybridization patterns all painting probes were classified into two major groups: the first group (ARUT5, 6, 8 as well as microchromosome specific probes C, E, F, G, H, and I) painted only a single region each on sterlet metaphases, while probes of the second group (ARUT1p, 7 as well as microchromosome derived probes A, B, D, J, K, M, and N) marked two genomic segments each on different chromosomes. Similar results were obtained on male and female metaphases.</AbstractText><AbstractText Label="CONCLUSIONS" NlmCategory="CONCLUSIONS">The sterlet genome represents a complex mosaic structure and consists of diploid and tetraploid chromosome segments. This may be regarded as a transition stage from paleotetraploid (functional diploid) to diploid genome condition. Molecular cytogenetic and genomic studies of other 120- and 240-chromosomal sturgeons are needed to reconstruct genome evolution of this vertebrate group.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Romanenko</LastName><ForeName>Svetlana A</ForeName><Initials>SA</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Biltueva</LastName><ForeName>Larisa S</ForeName><Initials>LS</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Serdyukova</LastName><ForeName>Natalya A</ForeName><Initials>NA</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kulemzina</LastName><ForeName>Anastasia I</ForeName><Initials>AI</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Beklemisheva</LastName><ForeName>Violetta R</ForeName><Initials>VR</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Gladkikh</LastName><ForeName>Olga L</ForeName><Initials>OL</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Lemskaya</LastName><ForeName>Natalia A</ForeName><Initials>NA</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Interesova</LastName><ForeName>Elena A</ForeName><Initials>EA</Initials><AffiliationInfo><Affiliation>Novosibirsk Branch of the Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Novosibirsk, Russia ; Tomsk State University, Tomsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Korentovich</LastName><ForeName>Marina A</ForeName><Initials>MA</Initials><AffiliationInfo><Affiliation>Federal State Budgetary Scientific Institution "State Scientific-and-Production Centre for Fisheries (Gosrybcenter)", Tyumen, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Vorobieva</LastName><ForeName>Nadezhda V</ForeName><Initials>NV</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Graphodatsky</LastName><ForeName>Alexander S</ForeName><Initials>AS</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia ; Novosibirsk State University, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Trifonov</LastName><ForeName>Vladimir A</ForeName><Initials>VA</Initials><AffiliationInfo><Affiliation>Institute of Molecular and Cellular Biology SB RAS, Novosibirsk, Russia.</Affiliation></AffiliationInfo></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2015</Year><Month>11</Month><Day>19</Day></ArticleDate></Article><MedlineJournalInfo><Country>England</Country><MedlineTA>Mol Cytogenet</MedlineTA><NlmUniqueID>101317942</NlmUniqueID><ISSNLinking>1755-8166</ISSNLinking></MedlineJournalInfo><OtherID Source="NLM">PMC4652396</OtherID><KeywordList Owner="NOTNLM"><Keyword MajorTopicYN="N">Acipenseriformes</Keyword><Keyword MajorTopicYN="N">Banding</Keyword><Keyword MajorTopicYN="N">FISH</Keyword><Keyword MajorTopicYN="N">Fish cell line</Keyword><Keyword MajorTopicYN="N">Microdissection</Keyword><Keyword MajorTopicYN="N">Satellite DNA</Keyword><Keyword MajorTopicYN="N">Telomeric repeat</Keyword><Keyword MajorTopicYN="N">rRNA</Keyword></KeywordList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="received"><Year>2015</Year><Month>09</Month><Day>04</Day></PubMedPubDate><PubMedPubDate PubStatus="accepted"><Year>2015</Year><Month>11</Month><Day>07</Day></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2015</Year><Month>11</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2015</Year><Month>11</Month><Day>21</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2015</Year><Month>11</Month><Day>21</Day><Hour>6</Hour><Minute>1</Minute></PubMedPubDate></History><PublicationStatus>epublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">26587056</ArticleId><ArticleId IdType="doi">10.1186/s13039-015-0194-8</ArticleId><ArticleId IdType="pii">194</ArticleId><ArticleId IdType="pmc">PMC4652396</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Russie</li></country></list><tree><country name="Russie"><noRegion><name sortKey="Romanenko, Svetlana A" sort="Romanenko, Svetlana A" uniqKey="Romanenko S" first="Svetlana A" last="Romanenko">Svetlana A. Romanenko</name></noRegion><name sortKey="Beklemisheva, Violetta R" sort="Beklemisheva, Violetta R" uniqKey="Beklemisheva V" first="Violetta R" last="Beklemisheva">Violetta R. Beklemisheva</name><name sortKey="Biltueva, Larisa S" sort="Biltueva, Larisa S" uniqKey="Biltueva L" first="Larisa S" last="Biltueva">Larisa S. Biltueva</name><name sortKey="Gladkikh, Olga L" sort="Gladkikh, Olga L" uniqKey="Gladkikh O" first="Olga L" last="Gladkikh">Olga L. Gladkikh</name><name sortKey="Graphodatsky, Alexander S" sort="Graphodatsky, Alexander S" uniqKey="Graphodatsky A" first="Alexander S" last="Graphodatsky">Alexander S. Graphodatsky</name><name sortKey="Interesova, Elena A" sort="Interesova, Elena A" uniqKey="Interesova E" first="Elena A" last="Interesova">Elena A. Interesova</name><name sortKey="Korentovich, Marina A" sort="Korentovich, Marina A" uniqKey="Korentovich M" first="Marina A" last="Korentovich">Marina A. Korentovich</name><name sortKey="Kulemzina, Anastasia I" sort="Kulemzina, Anastasia I" uniqKey="Kulemzina A" first="Anastasia I" last="Kulemzina">Anastasia I. Kulemzina</name><name sortKey="Lemskaya, Natalia A" sort="Lemskaya, Natalia A" uniqKey="Lemskaya N" first="Natalia A" last="Lemskaya">Natalia A. Lemskaya</name><name sortKey="Serdyukova, Natalya A" sort="Serdyukova, Natalya A" uniqKey="Serdyukova N" first="Natalya A" last="Serdyukova">Natalya A. Serdyukova</name><name sortKey="Trifonov, Vladimir A" sort="Trifonov, Vladimir A" uniqKey="Trifonov V" first="Vladimir A" last="Trifonov">Vladimir A. Trifonov</name><name sortKey="Vorobieva, Nadezhda V" sort="Vorobieva, Nadezhda V" uniqKey="Vorobieva N" first="Nadezhda V" last="Vorobieva">Nadezhda V. Vorobieva</name></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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