EsturgeonV1, PascalFrancis, Curation, bibRecord, 000341

Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate

Identifieur interne : 000341 ( PascalFrancis/Curation ); précédent : 000340; suivant : 000342

Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate

Auteurs : Masanori Fujimoto [États-Unis] ; James A. Crossman [États-Unis] ; Kim T. Scribner [États-Unis] ; Terence L. Marsh [États-Unis]

Source :

Microbial ecology [ 0095-3628 ] ; 2013.

RBID : Pascal:13-0329910

Descripteurs français

Pascal (Inist)
- Communauté microbienne, Oeuf, Frai, Cours eau, Débit, Ecologie, Milieu eau douce, Acipenser fulvescens.

English descriptors

KwdEn :
- Ecology, Egg, Flow rate, Freshwater environment, Microbial community, Spawning, Stream.

Abstract

We investigated microbial succession on lake sturgeon (Acipenser fulvescens) egg surfaces over the course of their incubation period as a function of simulated stream flow rate. The primary objective was to characterize the microbial community assembly during succession and to examine how simulated stream flow rate affect the successional process. Sturgeon eggs were reared under three flow regimes; high (0.55 m/s), low (0.18 m/s), and variable (0.35 and 0.11 m/s alternating 12 h intervals). Eggs were collected from each flow regime at different egg developmental stages. Microbial community DNA was extracted from egg surface and the communities were examined using 16S rRNA gene-based terminal restriction fragment length polymorphism and 454 pyrosequencing. Analysis of these datasets using principal component analysis revealed that microbial communities were clustered by egg developmental stages (early, middle, and late) regardless of flow regimes. 454 pyrosequencing data suggested that 90-98 % of the microbial communities were composed of the phyla Proteobacteria and Bacteroidetes throughout succession. β-Protebacteria was more dominant in the early stage, Bacteroidetes became more dominant in the middle stage, and α-Proteobacteria became dominant in the late stage. A total of 360 genera and 5,826 OTUs at 97 % similarity cutoff were associated with the eggs. Midway through egg development, the egg-associated communities of the low flow regime had a higher diversity than those communities developed under high or variable flow regimes. Results show that microbial community turnover occurred during embryogenesis, and stream flow rate influenced the microbial succession processes on the sturgeon egg surfaces.

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A11	`02`	`1`		`@1 CROSSMAN (James A.)`
A11	`03`	`1`		`@1 SCRIBNER (Kim T.)`
A11	`04`	`1`		`@1 MARSH (Terence L.)`
A14	`01`			`@1 Department of Microbiology and Molecular Genetics, Michigan State University, 6171 Biomedical and Physical Sciences @2 East Lansing, MI 48824 @3 USA @Z 1 aut.`
A14	`02`			`@1 The Center for Microbial Ecology, Michigan State University @2 East Lansing, MI 48824 @3 USA @Z 1 aut. @Z 4 aut.`
A14	`03`			`@1 Department of Fisheries and Wildlife, Michigan State University @2 East Lansing, MI 48824 @3 USA @Z 2 aut. @Z 3 aut.`
A14	`04`			`@1 Department of Zoology, Michigan State University @2 East Lansing, MI 48824 @3 USA @Z 3 aut.`
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C01	`01`		`ENG`	@0 We investigated microbial succession on lake sturgeon (Acipenser fulvescens) egg surfaces over the course of their incubation period as a function of simulated stream flow rate. The primary objective was to characterize the microbial community assembly during succession and to examine how simulated stream flow rate affect the successional process. Sturgeon eggs were reared under three flow regimes; high (0.55 m/s), low (0.18 m/s), and variable (0.35 and 0.11 m/s alternating 12 h intervals). Eggs were collected from each flow regime at different egg developmental stages. Microbial community DNA was extracted from egg surface and the communities were examined using 16S rRNA gene-based terminal restriction fragment length polymorphism and 454 pyrosequencing. Analysis of these datasets using principal component analysis revealed that microbial communities were clustered by egg developmental stages (early, middle, and late) regardless of flow regimes. 454 pyrosequencing data suggested that 90-98 % of the microbial communities were composed of the phyla Proteobacteria and Bacteroidetes throughout succession. β-Protebacteria was more dominant in the early stage, Bacteroidetes became more dominant in the middle stage, and α-Proteobacteria became dominant in the late stage. A total of 360 genera and 5,826 OTUs at 97 % similarity cutoff were associated with the eggs. Midway through egg development, the egg-associated communities of the low flow regime had a higher diversity than those communities developed under high or variable flow regimes. Results show that microbial community turnover occurred during embryogenesis, and stream flow rate influenced the microbial succession processes on the sturgeon egg surfaces.
C02	`01`	`X`		`@0 002A05`
C03	`01`	`X`	`FRE`	`@0 Communauté microbienne @5 05`
C03	`01`	`X`	`ENG`	`@0 Microbial community @5 05`
C03	`01`	`X`	`SPA`	`@0 Comunidad microbiana @5 05`
C03	`02`	`X`	`FRE`	`@0 Oeuf @5 06`
C03	`02`	`X`	`ENG`	`@0 Egg @5 06`
C03	`02`	`X`	`SPA`	`@0 Huevo @5 06`
C03	`03`	`X`	`FRE`	`@0 Frai @5 07`
C03	`03`	`X`	`ENG`	`@0 Spawning @5 07`
C03	`03`	`X`	`SPA`	`@0 Freza @5 07`
C03	`04`	`X`	`FRE`	`@0 Cours eau @5 08`
C03	`04`	`X`	`ENG`	`@0 Stream @5 08`
C03	`04`	`X`	`SPA`	`@0 Curso agua @5 08`
C03	`05`	`X`	`FRE`	`@0 Débit @5 09`
C03	`05`	`X`	`ENG`	`@0 Flow rate @5 09`
C03	`05`	`X`	`SPA`	`@0 Gasto @5 09`
C03	`06`	`X`	`FRE`	`@0 Ecologie @5 10`
C03	`06`	`X`	`ENG`	`@0 Ecology @5 10`
C03	`06`	`X`	`SPA`	`@0 Ecología @5 10`
C03	`07`	`X`	`FRE`	`@0 Milieu eau douce @5 45`
C03	`07`	`X`	`ENG`	`@0 Freshwater environment @5 45`
C03	`07`	`X`	`SPA`	`@0 Medio agua dulce @5 45`
C03	`08`	`X`	`FRE`	`@0 Acipenser fulvescens @4 INC @5 79`
C07	`01`	`X`	`FRE`	`@0 Pisces @2 NS @5 13`
C07	`01`	`X`	`ENG`	`@0 Pisces @2 NS @5 13`
C07	`01`	`X`	`SPA`	`@0 Pisces @2 NS @5 13`
C07	`02`	`X`	`FRE`	`@0 Vertebrata @2 NS`
C07	`02`	`X`	`ENG`	`@0 Vertebrata @2 NS`
C07	`02`	`X`	`SPA`	`@0 Vertebrata @2 NS`
C07	`03`	`X`	`FRE`	`@0 Reproduction @5 16`
C07	`03`	`X`	`ENG`	`@0 Reproduction @5 16`
C07	`03`	`X`	`SPA`	`@0 Reproducción @5 16`
C07	`04`	`X`	`FRE`	`@0 Acipenseridae @4 INC @5 80`
N21				`@1 308`
N44	`01`			`@1 OTO`
N82				`@1 OTO`

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Le document en format XML

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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate</title>
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<front><div type="abstract" xml:lang="en">We investigated microbial succession on lake sturgeon (Acipenser fulvescens) egg surfaces over the course of their incubation period as a function of simulated stream flow rate. The primary objective was to characterize the microbial community assembly during succession and to examine how simulated stream flow rate affect the successional process. Sturgeon eggs were reared under three flow regimes; high (0.55 m/s), low (0.18 m/s), and variable (0.35 and 0.11 m/s alternating 12 h intervals). Eggs were collected from each flow regime at different egg developmental stages. Microbial community DNA was extracted from egg surface and the communities were examined using 16S rRNA gene-based terminal restriction fragment length polymorphism and 454 pyrosequencing. Analysis of these datasets using principal component analysis revealed that microbial communities were clustered by egg developmental stages (early, middle, and late) regardless of flow regimes. 454 pyrosequencing data suggested that 90-98 % of the microbial communities were composed of the phyla Proteobacteria and Bacteroidetes throughout succession. β-Protebacteria was more dominant in the early stage, Bacteroidetes became more dominant in the middle stage, and α-Proteobacteria became dominant in the late stage. A total of 360 genera and 5,826 OTUs at 97 % similarity cutoff were associated with the eggs. Midway through egg development, the egg-associated communities of the low flow regime had a higher diversity than those communities developed under high or variable flow regimes. Results show that microbial community turnover occurred during embryogenesis, and stream flow rate influenced the microbial succession processes on the sturgeon egg surfaces.</div>
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<fC01 i1="01" l="ENG"><s0>We investigated microbial succession on lake sturgeon (Acipenser fulvescens) egg surfaces over the course of their incubation period as a function of simulated stream flow rate. The primary objective was to characterize the microbial community assembly during succession and to examine how simulated stream flow rate affect the successional process. Sturgeon eggs were reared under three flow regimes; high (0.55 m/s), low (0.18 m/s), and variable (0.35 and 0.11 m/s alternating 12 h intervals). Eggs were collected from each flow regime at different egg developmental stages. Microbial community DNA was extracted from egg surface and the communities were examined using 16S rRNA gene-based terminal restriction fragment length polymorphism and 454 pyrosequencing. Analysis of these datasets using principal component analysis revealed that microbial communities were clustered by egg developmental stages (early, middle, and late) regardless of flow regimes. 454 pyrosequencing data suggested that 90-98 % of the microbial communities were composed of the phyla Proteobacteria and Bacteroidetes throughout succession. β-Protebacteria was more dominant in the early stage, Bacteroidetes became more dominant in the middle stage, and α-Proteobacteria became dominant in the late stage. A total of 360 genera and 5,826 OTUs at 97 % similarity cutoff were associated with the eggs. Midway through egg development, the egg-associated communities of the low flow regime had a higher diversity than those communities developed under high or variable flow regimes. Results show that microbial community turnover occurred during embryogenesis, and stream flow rate influenced the microbial succession processes on the sturgeon egg surfaces.</s0>
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<s5>06</s5>
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<s5>07</s5>
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<s5>08</s5>
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<s5>08</s5>
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<s5>45</s5>
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<s5>13</s5>
</fC07>
<fC07 i1="01" i2="X" l="ENG"><s0>Pisces</s0>
<s2>NS</s2>
<s5>13</s5>
</fC07>
<fC07 i1="01" i2="X" l="SPA"><s0>Pisces</s0>
<s2>NS</s2>
<s5>13</s5>
</fC07>
<fC07 i1="02" i2="X" l="FRE"><s0>Vertebrata</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="02" i2="X" l="ENG"><s0>Vertebrata</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="02" i2="X" l="SPA"><s0>Vertebrata</s0>
<s2>NS</s2>
</fC07>
<fC07 i1="03" i2="X" l="FRE"><s0>Reproduction</s0>
<s5>16</s5>
</fC07>
<fC07 i1="03" i2="X" l="ENG"><s0>Reproduction</s0>
<s5>16</s5>
</fC07>
<fC07 i1="03" i2="X" l="SPA"><s0>Reproducción</s0>
<s5>16</s5>
</fC07>
<fC07 i1="04" i2="X" l="FRE"><s0>Acipenseridae</s0>
<s4>INC</s4>
<s5>80</s5>
</fC07>
<fN21><s1>308</s1>
</fN21>
<fN44 i1="01"><s1>OTO</s1>
</fN44>
<fN82><s1>OTO</s1>
</fN82>
</pA>
</standard>
</inist>
</record>

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   |area=    EsturgeonV1
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   |texte=   Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate
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Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate

Microbial Community Assembly and Succession on Lake Sturgeon Egg Surfaces as a Function of Simulated Spawning Stream Flow Rate

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