SRY-related (Sox) genes in the genome of European Atlantic sturgeon (Acipenser sturio).
Identifieur interne : 000147 ( Ncbi/Merge ); précédent : 000146; suivant : 000148SRY-related (Sox) genes in the genome of European Atlantic sturgeon (Acipenser sturio).
Auteurs : Anne Kathrin Hett [Allemagne] ; Arne LudwigSource :
- Genome [ 0831-2796 ] ; 2005.
English descriptors
- KwdEn :
- Amino Acid Sequence, Animals, Female, Fishes (genetics), Gene Duplication, Genome, HMG-Box Domains (genetics), High Mobility Group Proteins (classification), High Mobility Group Proteins (genetics), Male, Mice, Molecular Sequence Data, Phylogeny, Sex Determination Processes, Transcription Factors (classification), Transcription Factors (genetics).
- MESH :
- chemical , classification : High Mobility Group Proteins, Transcription Factors.
- genetics : Fishes, HMG-Box Domains, High Mobility Group Proteins, Transcription Factors.
- Amino Acid Sequence, Animals, Female, Gene Duplication, Genome, Male, Mice, Molecular Sequence Data, Phylogeny, Sex Determination Processes.
Abstract
The Sox-gene family represents an ancient group of transcription factors involved in numerous developmental processes and sex determination in vertebrates. SOX proteins are characterized by a conserved high mobility group (HMG)-box domain, which is responsible for DNA binding and bending. We studied Sox genes in sturgeon, one of the most primitive groups of fishes characterized by a high chromosome number. Male and female genomes were screened for Sox genes using highly degenerate primers that amplified a broad range of HMG boxes. A total of 102 clones, representing 22 different sequences coding for 8 Sox genes, was detected and classified according to their orthologues. Sox2, Sox3, Sox4, Sox9, Sox11, Sox17, Sox19, and Sox21 were found in sturgeon; these genes represent Sox groups B, C, E, and F. In a phylogenetic analysis (neighbor-joining, maximum likelihood, maximum parsimony), these genes clustered with their mouse orthologues. In the case of Sox4, Sox17, and Sox21, we found evidence of gene duplication.
DOI: 10.1139/g04-112
PubMed: 15838539
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000539
- to stream PubMed, to step Curation: 000539
- to stream PubMed, to step Checkpoint: 000539
Links to Exploration step
pubmed:15838539Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">SRY-related (Sox) genes in the genome of European Atlantic sturgeon (Acipenser sturio).</title><author><name sortKey="Hett, Anne Kathrin" sort="Hett, Anne Kathrin" uniqKey="Hett A" first="Anne Kathrin" last="Hett">Anne Kathrin Hett</name><affiliation wicri:level="3"><nlm:affiliation>Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Ludwig, Arne" sort="Ludwig, Arne" uniqKey="Ludwig A" first="Arne" last="Ludwig">Arne Ludwig</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2005">2005</date><idno type="RBID">pubmed:15838539</idno><idno type="pmid">15838539</idno><idno type="doi">10.1139/g04-112</idno><idno type="wicri:Area/PubMed/Corpus">000539</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000539</idno><idno type="wicri:Area/PubMed/Curation">000539</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000539</idno><idno type="wicri:Area/PubMed/Checkpoint">000539</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000539</idno><idno type="wicri:Area/Ncbi/Merge">000147</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">SRY-related (Sox) genes in the genome of European Atlantic sturgeon (Acipenser sturio).</title><author><name sortKey="Hett, Anne Kathrin" sort="Hett, Anne Kathrin" uniqKey="Hett A" first="Anne Kathrin" last="Hett">Anne Kathrin Hett</name><affiliation wicri:level="3"><nlm:affiliation>Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics, Berlin, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics, Berlin</wicri:regionArea><placeName><region type="land" nuts="3">Berlin</region><settlement type="city">Berlin</settlement></placeName></affiliation></author><author><name sortKey="Ludwig, Arne" sort="Ludwig, Arne" uniqKey="Ludwig A" first="Arne" last="Ludwig">Arne Ludwig</name></author></analytic><series><title level="j">Genome</title><idno type="ISSN">0831-2796</idno><imprint><date when="2005" type="published">2005</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Female</term><term>Fishes (genetics)</term><term>Gene Duplication</term><term>Genome</term><term>HMG-Box Domains (genetics)</term><term>High Mobility Group Proteins (classification)</term><term>High Mobility Group Proteins (genetics)</term><term>Male</term><term>Mice</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sex Determination Processes</term><term>Transcription Factors (classification)</term><term>Transcription Factors (genetics)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="classification" xml:lang="en"><term>High Mobility Group Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fishes</term><term>HMG-Box Domains</term><term>High Mobility Group Proteins</term><term>Transcription Factors</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Amino Acid Sequence</term><term>Animals</term><term>Female</term><term>Gene Duplication</term><term>Genome</term><term>Male</term><term>Mice</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sex Determination Processes</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">The Sox-gene family represents an ancient group of transcription factors involved in numerous developmental processes and sex determination in vertebrates. SOX proteins are characterized by a conserved high mobility group (HMG)-box domain, which is responsible for DNA binding and bending. We studied Sox genes in sturgeon, one of the most primitive groups of fishes characterized by a high chromosome number. Male and female genomes were screened for Sox genes using highly degenerate primers that amplified a broad range of HMG boxes. A total of 102 clones, representing 22 different sequences coding for 8 Sox genes, was detected and classified according to their orthologues. Sox2, Sox3, Sox4, Sox9, Sox11, Sox17, Sox19, and Sox21 were found in sturgeon; these genes represent Sox groups B, C, E, and F. In a phylogenetic analysis (neighbor-joining, maximum likelihood, maximum parsimony), these genes clustered with their mouse orthologues. In the case of Sox4, Sox17, and Sox21, we found evidence of gene duplication.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">15838539</PMID><DateCreated><Year>2005</Year><Month>04</Month><Day>19</Day></DateCreated><DateCompleted><Year>2005</Year><Month>08</Month><Day>29</Day></DateCompleted><DateRevised><Year>2016</Year><Month>10</Month><Day>20</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0831-2796</ISSN><JournalIssue CitedMedium="Print"><Volume>48</Volume><Issue>2</Issue><PubDate><Year>2005</Year><Month>Apr</Month></PubDate></JournalIssue><Title>Genome</Title><ISOAbbreviation>Genome</ISOAbbreviation></Journal><ArticleTitle>SRY-related (Sox) genes in the genome of European Atlantic sturgeon (Acipenser sturio).</ArticleTitle><Pagination><MedlinePgn>181-6</MedlinePgn></Pagination><Abstract><AbstractText>The Sox-gene family represents an ancient group of transcription factors involved in numerous developmental processes and sex determination in vertebrates. SOX proteins are characterized by a conserved high mobility group (HMG)-box domain, which is responsible for DNA binding and bending. We studied Sox genes in sturgeon, one of the most primitive groups of fishes characterized by a high chromosome number. Male and female genomes were screened for Sox genes using highly degenerate primers that amplified a broad range of HMG boxes. A total of 102 clones, representing 22 different sequences coding for 8 Sox genes, was detected and classified according to their orthologues. Sox2, Sox3, Sox4, Sox9, Sox11, Sox17, Sox19, and Sox21 were found in sturgeon; these genes represent Sox groups B, C, E, and F. In a phylogenetic analysis (neighbor-joining, maximum likelihood, maximum parsimony), these genes clustered with their mouse orthologues. In the case of Sox4, Sox17, and Sox21, we found evidence of gene duplication.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hett</LastName><ForeName>Anne Kathrin</ForeName><Initials>AK</Initials><AffiliationInfo><Affiliation>Institute for Zoo and Wildlife Research, Department of Evolutionary Genetics, Berlin, Germany.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Ludwig</LastName><ForeName>Arne</ForeName><Initials>A</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>Canada</Country><MedlineTA>Genome</MedlineTA><NlmUniqueID>8704544</NlmUniqueID><ISSNLinking>0831-2796</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D006609">High Mobility Group Proteins</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D014157">Transcription Factors</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D000595" MajorTopicYN="N">Amino Acid Sequence</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D000818" MajorTopicYN="N">Animals</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005260" MajorTopicYN="N">Female</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D005399" MajorTopicYN="N">Fishes</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020440" MajorTopicYN="N">Gene Duplication</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016678" MajorTopicYN="N">Genome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D024742" MajorTopicYN="N">HMG-Box Domains</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D006609" MajorTopicYN="N">High Mobility Group Proteins</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D008297" MajorTopicYN="N">Male</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D051379" MajorTopicYN="N">Mice</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D008969" MajorTopicYN="N">Molecular Sequence Data</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019849" MajorTopicYN="N">Sex Determination Processes</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014157" MajorTopicYN="N">Transcription Factors</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="N">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="pubmed"><Year>2005</Year><Month>4</Month><Day>20</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2005</Year><Month>8</Month><Day>30</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="entrez"><Year>2005</Year><Month>4</Month><Day>20</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">15838539</ArticleId><ArticleId IdType="pii">g04-112</ArticleId><ArticleId IdType="doi">10.1139/g04-112</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Allemagne</li></country><region><li>Berlin</li></region><settlement><li>Berlin</li></settlement></list><tree><noCountry><name sortKey="Ludwig, Arne" sort="Ludwig, Arne" uniqKey="Ludwig A" first="Arne" last="Ludwig">Arne Ludwig</name></noCountry><country name="Allemagne"><region name="Berlin"><name sortKey="Hett, Anne Kathrin" sort="Hett, Anne Kathrin" uniqKey="Hett A" first="Anne Kathrin" last="Hett">Anne Kathrin Hett</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Eau/explor/EsturgeonV1/Data/Ncbi/Merge
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000147 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd -nk 000147 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Eau
|area= EsturgeonV1
|flux= Ncbi
|étape= Merge
|type= RBID
|clé= pubmed:15838539
|texte= SRY-related (Sox) genes in the genome of European Atlantic sturgeon (Acipenser sturio).
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Merge/RBID.i -Sk "pubmed:15838539" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Merge/biblio.hfd \
| NlmPubMed2Wicri -a EsturgeonV1
| This area was generated with Dilib version V0.6.27. |  |