Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis).
Identifieur interne : 000634 ( Ncbi/Curation ); précédent : 000633; suivant : 000635Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis).
Auteurs : Huamei Yue [République populaire de Chine] ; Chuangju Li [République populaire de Chine] ; Hao Du [République populaire de Chine] ; Shuhuan Zhang [République populaire de Chine] ; Qiwei Wei [République populaire de Chine]Source :
- PloS one [ 1932-6203 ] ; 2015.
English descriptors
- KwdEn :
- MESH :
- genetics : Fishes, Transcriptome.
- Animals, Gene Library, Molecular Sequence Annotation.
Abstract
The Chinese sturgeon (Acipenser sinensis) is endangered through anthropogenic activities including over-fishing, damming, shipping, and pollution. Controlled reproduction has been adopted and successfully conducted for conservation. However, little information is available on the reproductive regulation of the species. In this study, we conducted de novo transcriptome assembly of the gonad tissue to create a comprehensive dataset for A. sinensis.
DOI: 10.1371/journal.pone.0127332
PubMed: 26030930
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000130
- to stream PubMed, to step Curation: Pour aller vers cette notice dans l'étape Curation :000130
- to stream PubMed, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000130
- to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :000634
Links to Exploration step
pubmed:26030930Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis).</title>
<author><name sortKey="Yue, Huamei" sort="Yue, Huamei" uniqKey="Yue H" first="Huamei" last="Yue">Huamei Yue</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Chuangju" sort="Li, Chuangju" uniqKey="Li C" first="Chuangju" last="Li">Chuangju Li</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Du, Hao" sort="Du, Hao" uniqKey="Du H" first="Hao" last="Du">Hao Du</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Shuhuan" sort="Zhang, Shuhuan" uniqKey="Zhang S" first="Shuhuan" last="Zhang">Shuhuan Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wei, Qiwei" sort="Wei, Qiwei" uniqKey="Wei Q" first="Qiwei" last="Wei">Qiwei Wei</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">PubMed</idno>
<date when="2015">2015</date>
<idno type="RBID">pubmed:26030930</idno>
<idno type="pmid">26030930</idno>
<idno type="doi">10.1371/journal.pone.0127332</idno>
<idno type="wicri:Area/PubMed/Corpus">000130</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000130</idno>
<idno type="wicri:Area/PubMed/Curation">000130</idno>
<idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000130</idno>
<idno type="wicri:Area/PubMed/Checkpoint">000130</idno>
<idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000130</idno>
<idno type="wicri:Area/Ncbi/Merge">000634</idno>
<idno type="wicri:Area/Ncbi/Curation">000634</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title xml:lang="en">Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis).</title>
<author><name sortKey="Yue, Huamei" sort="Yue, Huamei" uniqKey="Yue H" first="Huamei" last="Yue">Huamei Yue</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Li, Chuangju" sort="Li, Chuangju" uniqKey="Li C" first="Chuangju" last="Li">Chuangju Li</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Du, Hao" sort="Du, Hao" uniqKey="Du H" first="Hao" last="Du">Hao Du</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Zhang, Shuhuan" sort="Zhang, Shuhuan" uniqKey="Zhang S" first="Shuhuan" last="Zhang">Shuhuan Zhang</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Wei, Qiwei" sort="Wei, Qiwei" uniqKey="Wei Q" first="Qiwei" last="Wei">Qiwei Wei</name>
<affiliation wicri:level="1"><nlm:affiliation>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081, China.</nlm:affiliation>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fisheries Science, Wuhan 430223, China; Freshwater Fisheries Research Center, Chinese Academy of Fisheries Science, Wuxi 214081</wicri:regionArea>
<wicri:noRegion>Wuxi 214081</wicri:noRegion>
</affiliation>
</author>
</analytic>
<series><title level="j">PloS one</title>
<idno type="eISSN">1932-6203</idno>
<imprint><date when="2015" type="published">2015</date>
</imprint>
</series>
</biblStruct>
</sourceDesc>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term>
<term>Fishes (genetics)</term>
<term>Gene Library</term>
<term>Molecular Sequence Annotation</term>
<term>Transcriptome (genetics)</term>
</keywords>
<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fishes</term>
<term>Transcriptome</term>
</keywords>
<keywords scheme="MESH" xml:lang="en"><term>Animals</term>
<term>Gene Library</term>
<term>Molecular Sequence Annotation</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">The Chinese sturgeon (Acipenser sinensis) is endangered through anthropogenic activities including over-fishing, damming, shipping, and pollution. Controlled reproduction has been adopted and successfully conducted for conservation. However, little information is available on the reproductive regulation of the species. In this study, we conducted de novo transcriptome assembly of the gonad tissue to create a comprehensive dataset for A. sinensis.</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Eau/explor/EsturgeonV1/Data/Ncbi/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000634 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd -nk 000634 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Eau |area= EsturgeonV1 |flux= Ncbi |étape= Curation |type= RBID |clé= pubmed:26030930 |texte= Sequencing and De Novo Assembly of the Gonadal Transcriptome of the Endangered Chinese Sturgeon (Acipenser sinensis). }}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/RBID.i -Sk "pubmed:26030930" \ | HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd \ | NlmPubMed2Wicri -a EsturgeonV1
![]() | This area was generated with Dilib version V0.6.27. | ![]() |