Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery.
Identifieur interne : 000285 ( Ncbi/Curation ); précédent : 000284; suivant : 000286Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery.
Auteurs : Matthew C. Hale [États-Unis] ; Cory R. Mccormick ; James R. Jackson ; J Andrew DewoodySource :
- BMC genomics [ 1471-2164 ] ; 2009.
English descriptors
- KwdEn :
- MESH :
- genetics : Fishes.
- metabolism : Gonads.
- methods : Gene Expression Profiling, Sequence Analysis, DNA.
- Animals, Expressed Sequence Tags, Female, Gene Library, Male, Pilot Projects, Polymorphism, Single Nucleotide.
Abstract
Next-generation sequencing technologies have been applied most often to model organisms or species closely related to a model. However, these methods have the potential to be valuable in many wild organisms, including those of conservation concern. We used Roche 454 pyrosequencing to characterize gene expression in polyploid lake sturgeon (Acipenser fulvescens) gonads.
DOI: 10.1186/1471-2164-10-203
PubMed: 19402907
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000434
- to stream PubMed, to step Curation: Pour aller vers cette notice dans l'étape Curation :000434
- to stream PubMed, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000434
- to stream Ncbi, to step Merge: Pour aller vers cette notice dans l'étape Curation :000285
Links to Exploration step
pubmed:19402907Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery.</title><author><name sortKey="Hale, Matthew C" sort="Hale, Matthew C" uniqKey="Hale M" first="Matthew C" last="Hale">Matthew C. Hale</name><affiliation wicri:level="2"><nlm:affiliation>Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907, USA. mchale@purdue.edu</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907</wicri:regionArea><placeName><region type="state">Indiana</region></placeName></affiliation></author><author><name sortKey="Mccormick, Cory R" sort="Mccormick, Cory R" uniqKey="Mccormick C" first="Cory R" last="Mccormick">Cory R. Mccormick</name></author><author><name sortKey="Jackson, James R" sort="Jackson, James R" uniqKey="Jackson J" first="James R" last="Jackson">James R. Jackson</name></author><author><name sortKey="Dewoody, J Andrew" sort="Dewoody, J Andrew" uniqKey="Dewoody J" first="J Andrew" last="Dewoody">J Andrew Dewoody</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2009">2009</date><idno type="RBID">pubmed:19402907</idno><idno type="pmid">19402907</idno><idno type="doi">10.1186/1471-2164-10-203</idno><idno type="wicri:Area/PubMed/Corpus">000434</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">000434</idno><idno type="wicri:Area/PubMed/Curation">000434</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">000434</idno><idno type="wicri:Area/PubMed/Checkpoint">000434</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">000434</idno><idno type="wicri:Area/Ncbi/Merge">000285</idno><idno type="wicri:Area/Ncbi/Curation">000285</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery.</title><author><name sortKey="Hale, Matthew C" sort="Hale, Matthew C" uniqKey="Hale M" first="Matthew C" last="Hale">Matthew C. Hale</name><affiliation wicri:level="2"><nlm:affiliation>Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907, USA. mchale@purdue.edu</nlm:affiliation><country xml:lang="fr">États-Unis</country><wicri:regionArea>Department of Forestry and Natural Resources, Purdue University, West Lafayette, IN 47907</wicri:regionArea><placeName><region type="state">Indiana</region></placeName></affiliation></author><author><name sortKey="Mccormick, Cory R" sort="Mccormick, Cory R" uniqKey="Mccormick C" first="Cory R" last="Mccormick">Cory R. Mccormick</name></author><author><name sortKey="Jackson, James R" sort="Jackson, James R" uniqKey="Jackson J" first="James R" last="Jackson">James R. Jackson</name></author><author><name sortKey="Dewoody, J Andrew" sort="Dewoody, J Andrew" uniqKey="Dewoody J" first="J Andrew" last="Dewoody">J Andrew Dewoody</name></author></analytic><series><title level="j">BMC genomics</title><idno type="eISSN">1471-2164</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Expressed Sequence Tags</term><term>Female</term><term>Fishes (genetics)</term><term>Gene Expression Profiling (methods)</term><term>Gene Library</term><term>Gonads (metabolism)</term><term>Male</term><term>Pilot Projects</term><term>Polymorphism, Single Nucleotide</term><term>Sequence Analysis, DNA (methods)</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Fishes</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Gonads</term></keywords><keywords scheme="MESH" qualifier="methods" xml:lang="en"><term>Gene Expression Profiling</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Expressed Sequence Tags</term><term>Female</term><term>Gene Library</term><term>Male</term><term>Pilot Projects</term><term>Polymorphism, Single Nucleotide</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Next-generation sequencing technologies have been applied most often to model organisms or species closely related to a model. However, these methods have the potential to be valuable in many wild organisms, including those of conservation concern. We used Roche 454 pyrosequencing to characterize gene expression in polyploid lake sturgeon (Acipenser fulvescens) gonads.</div></front></TEI></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Eau/explor/EsturgeonV1/Data/Ncbi/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000285 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd -nk 000285 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Eau
|area= EsturgeonV1
|flux= Ncbi
|étape= Curation
|type= RBID
|clé= pubmed:19402907
|texte= Next-generation pyrosequencing of gonad transcriptomes in the polyploid lake sturgeon (Acipenser fulvescens): the relative merits of normalization and rarefaction in gene discovery.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Ncbi/Curation/RBID.i -Sk "pubmed:19402907" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Ncbi/Curation/biblio.hfd \
| NlmPubMed2Wicri -a EsturgeonV1
| This area was generated with Dilib version V0.6.27. |  |