Characterization, phylogeny, alternative splicing and expression of Sox30 gene
Identifieur interne : 000792 ( Main/Merge ); précédent : 000791; suivant : 000793Characterization, phylogeny, alternative splicing and expression of Sox30 gene
Auteurs : Fei Han [République populaire de Chine] ; Zhijian Wang [République populaire de Chine] ; Fengrui Wu [République populaire de Chine] ; Zhihao Liu [République populaire de Chine] ; Baofeng Huang [République populaire de Chine] ; Deshou Wang [République populaire de Chine]Source :
- BMC Molecular Biology [ 1471-2199 ] ; 2010.
Abstract
Members of the Sox gene family isolated from both vertebrates and invertebrates have been proved to participate in a wide variety of developmental processes, including sex determination and differentiation. Among these members,
Url:
DOI: 10.1186/1471-2199-11-98
PubMed: 21143990
PubMed Central: 3004900
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PMC:3004900Le document en format XML
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a" type="main">Characterization, phylogeny, alternative splicing and expression of <italic>Sox30 </italic>
gene</title>
<author><name sortKey="Han, Fei" sort="Han, Fei" uniqKey="Han F" first="Fei" last="Han">Fei Han</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Science, Southwest University, Chongqing 400715, PR China</nlm:aff>
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<author><name sortKey="Wang, Zhijian" sort="Wang, Zhijian" uniqKey="Wang Z" first="Zhijian" last="Wang">Zhijian Wang</name>
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<author><name sortKey="Liu, Zhihao" sort="Liu, Zhihao" uniqKey="Liu Z" first="Zhihao" last="Liu">Zhihao Liu</name>
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<author><name sortKey="Huang, Baofeng" sort="Huang, Baofeng" uniqKey="Huang B" first="Baofeng" last="Huang">Baofeng Huang</name>
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</affiliation>
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<author><name sortKey="Wang, Deshou" sort="Wang, Deshou" uniqKey="Wang D" first="Deshou" last="Wang">Deshou Wang</name>
<affiliation wicri:level="1"><nlm:aff id="I1">Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Science, Southwest University, Chongqing 400715, PR China</nlm:aff>
<country xml:lang="fr">République populaire de Chine</country>
<wicri:regionArea>Key Laboratory of Freshwater Fish Reproduction and Development (Ministry of Education), Key Laboratory of Aquatic Science of Chongqing, School of Life Science, Southwest University, Chongqing 400715</wicri:regionArea>
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<series><title level="j">BMC Molecular Biology</title>
<idno type="eISSN">1471-2199</idno>
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<front><div type="abstract" xml:lang="en"><sec><title>Background</title>
<p>Members of the Sox gene family isolated from both vertebrates and invertebrates have been proved to participate in a wide variety of developmental processes, including sex determination and differentiation. Among these members, <italic>Sox30 </italic>
had been considered to exist only in mammals since its discovery, and its exact function remains unclear.</p>
</sec>
<sec><title>Results</title>
<p><italic>Sox30 </italic>
cDNA was cloned from the Nile tilapia by RT-PCR and RACE. Screening of available genome and EST databases and phylogenetic analysis showed that <italic>Sox30 </italic>
also exists in non-mammalian vertebrates and invertebrates, which was further supported by synteny analyses. Tissue expression in human, mouse and tilapia suggested that <italic>Sox30 </italic>
was probably a gonad-specific gene, which was also supported by the fact that <italic>Sox30 </italic>
EST sequences were obtained from gonads of the animal species. In addition, four alternatively spliced isoforms were isolated from tilapia gonad. Their temporal and spatial expression patterns during normal and sex reversed gonadal development were investigated by RT-PCR and <italic>in situ </italic>
hybridization. Our data suggest that expressions of <italic>Sox30 </italic>
isoforms are related to stage and phenotypic-sex, observed in the germ cells of male gonad and in somatic cells of the female gonad.</p>
</sec>
<sec><title>Conclusions</title>
<p><italic>Sox30 </italic>
is not a gene only existed in mammals, but exists widely throughout the animal kingdom as supported by our bioinformatic, phylogenetic and syntenic analyses. It is very likely that <italic>Sox30 </italic>
is expressed exclusively in gonads. Expression analyses revealed that <italic>Sox30 </italic>
may be involved in female and male gonadal development at different stages by alternative splicing.</p>
</sec>
</div>
</front>
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