Genetic diversity of Ligula intestinalis (Cestoda: Diphyllobothriidea) based on analysis of inter‐simple sequence repeat markers
Identifieur interne : 000A90 ( Main/Curation ); précédent : 000A89; suivant : 000A91Genetic diversity of Ligula intestinalis (Cestoda: Diphyllobothriidea) based on analysis of inter‐simple sequence repeat markers
Auteurs : W. Bouzid [France, Tunisie] ; S. Lek [France] ; M. Mace [France] ; O. Ben Hassine [Tunisie] ; R. Etienne [France] ; L. Legal [France] ; G. Loot [France]Source :
- Journal of Zoological Systematics and Evolutionary Research [ 0947-5745 ] ; 2008-11.
English descriptors
- KwdEn :
Abstract
In order to investigate the genetic diversity of Ligula intestinalis populations, nine inter‐simple sequence repeat (ISSR) markers were applied to populations from nine geographical areas around the world and 10 host species. The 110 loci selected from the ISSR patterns produced revealed high variability among the analysed samples, with a polymorphism of 100% and a global coefficient of gene differentiation estimated by Nei’s index (GST) of 0.776. Major genetic differentiation was found to be correlated to five broad geographical regions (Europe, China, Canada, Australia and Algeria). Nevertheless, no significant genetic variation was found among European isolates, although they originated from disparate geographical localities and/or unrelated hosts. Classical classification methods: maximum parsimony and factorial correspondence analysis were compared with an advanced statistical method: the self‐organizing map (SOM). The results demonstrated that the ISSR approach is rapid and inexpensive and provides reliable markers to assess genetic diversity of L. intestinalis. Furthermore, SOM artificial neuronal networks are considered to provide an efficient alternative tool for mapping the genetic structures of parasite populations.
Url:
DOI: 10.1111/j.1439-0469.2008.00471.x
Links toward previous steps (curation, corpus...)
- to stream Istex, to step Corpus: Pour aller vers cette notice dans l'étape Curation :000D69
- to stream Istex, to step Curation: Pour aller vers cette notice dans l'étape Curation :000D67
- to stream Istex, to step Checkpoint: Pour aller vers cette notice dans l'étape Curation :000512
- to stream Main, to step Merge: Pour aller vers cette notice dans l'étape Curation :000B12
Links to Exploration step
ISTEX:08CBA7044F5CA2169A35BE519EF26C804CCC45C0Le document en format XML
<record><TEI wicri:istexFullTextTei="biblStruct"><teiHeader><fileDesc><titleStmt><title xml:lang="en">Genetic diversity of Ligula intestinalis (Cestoda: Diphyllobothriidea) based on analysis of inter‐simple sequence repeat markers</title>
<author><name sortKey="Bouzid, W" sort="Bouzid, W" uniqKey="Bouzid W" first="W." last="Bouzid">W. Bouzid</name>
</author>
<author><name sortKey="Lek, S" sort="Lek, S" uniqKey="Lek S" first="S." last="Lek">S. Lek</name>
</author>
<author><name sortKey="Mace, M" sort="Mace, M" uniqKey="Mace M" first="M." last="Mace">M. Mace</name>
</author>
<author><name sortKey="Ben Hassine, O" sort="Ben Hassine, O" uniqKey="Ben Hassine O" first="O." last="Ben Hassine">O. Ben Hassine</name>
</author>
<author><name sortKey="Etienne, R" sort="Etienne, R" uniqKey="Etienne R" first="R." last="Etienne">R. Etienne</name>
</author>
<author><name sortKey="Legal, L" sort="Legal, L" uniqKey="Legal L" first="L." last="Legal">L. Legal</name>
</author>
<author><name sortKey="Loot, G" sort="Loot, G" uniqKey="Loot G" first="G." last="Loot">G. Loot</name>
</author>
</titleStmt>
<publicationStmt><idno type="wicri:source">ISTEX</idno>
<idno type="RBID">ISTEX:08CBA7044F5CA2169A35BE519EF26C804CCC45C0</idno>
<date when="2008" year="2008">2008</date>
<idno type="doi">10.1111/j.1439-0469.2008.00471.x</idno>
<idno type="url">https://api.istex.fr/document/08CBA7044F5CA2169A35BE519EF26C804CCC45C0/fulltext/pdf</idno>
<idno type="wicri:Area/Istex/Corpus">000D69</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Corpus" wicri:corpus="ISTEX">000D69</idno>
<idno type="wicri:Area/Istex/Curation">000D67</idno>
<idno type="wicri:Area/Istex/Checkpoint">000512</idno>
<idno type="wicri:explorRef" wicri:stream="Istex" wicri:step="Checkpoint">000512</idno>
<idno type="wicri:doubleKey">0947-5745:2008:Bouzid W:genetic:diversity:of</idno>
<idno type="wicri:Area/Main/Merge">000B12</idno>
<idno type="wicri:Area/Main/Curation">000A90</idno>
</publicationStmt>
<sourceDesc><biblStruct><analytic><title level="a" type="main" xml:lang="en">Genetic diversity of Ligula intestinalis (Cestoda: Diphyllobothriidea) based on analysis of inter‐simple sequence repeat markers</title>
<author><name sortKey="Bouzid, W" sort="Bouzid, W" uniqKey="Bouzid W" first="W." last="Bouzid">W. Bouzid</name>
<affiliation wicri:level="4"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire Evolution et Diversité Biologique, Université Paul Sabatier, Toulouse cedex 4</wicri:regionArea>
<orgName type="university">Université Toulouse III - Paul Sabatier</orgName>
<placeName><settlement type="city">Toulouse</settlement>
<region type="region" nuts="2">Occitanie (région administrative)</region>
<region type="old region" nuts="2">Midi-Pyrénées</region>
</placeName>
</affiliation>
<affiliation wicri:level="3"><country xml:lang="fr">Tunisie</country>
<wicri:regionArea>Unité de Recherche, Biologie, Ecologie et Parasitologie des organismes aquatiques, Faculté des Sciences, Tunis</wicri:regionArea>
<placeName><settlement type="city">Tunis</settlement>
<region nuts="2">Gouvernorat de Tunis</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Lek, S" sort="Lek, S" uniqKey="Lek S" first="S." last="Lek">S. Lek</name>
<affiliation wicri:level="4"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire Evolution et Diversité Biologique, Université Paul Sabatier, Toulouse cedex 4</wicri:regionArea>
<orgName type="university">Université Toulouse III - Paul Sabatier</orgName>
<placeName><settlement type="city">Toulouse</settlement>
<region type="region" nuts="2">Occitanie (région administrative)</region>
<region type="old region" nuts="2">Midi-Pyrénées</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Mace, M" sort="Mace, M" uniqKey="Mace M" first="M." last="Mace">M. Mace</name>
<affiliation wicri:level="4"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire Evolution et Diversité Biologique, Université Paul Sabatier, Toulouse cedex 4</wicri:regionArea>
<orgName type="university">Université Toulouse III - Paul Sabatier</orgName>
<placeName><settlement type="city">Toulouse</settlement>
<region type="region" nuts="2">Occitanie (région administrative)</region>
<region type="old region" nuts="2">Midi-Pyrénées</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Ben Hassine, O" sort="Ben Hassine, O" uniqKey="Ben Hassine O" first="O." last="Ben Hassine">O. Ben Hassine</name>
<affiliation wicri:level="3"><country xml:lang="fr">Tunisie</country>
<wicri:regionArea>Unité de Recherche, Biologie, Ecologie et Parasitologie des organismes aquatiques, Faculté des Sciences, Tunis</wicri:regionArea>
<placeName><settlement type="city">Tunis</settlement>
<region nuts="2">Gouvernorat de Tunis</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Etienne, R" sort="Etienne, R" uniqKey="Etienne R" first="R." last="Etienne">R. Etienne</name>
<affiliation wicri:level="4"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire Evolution et Diversité Biologique, Université Paul Sabatier, Toulouse cedex 4</wicri:regionArea>
<orgName type="university">Université Toulouse III - Paul Sabatier</orgName>
<placeName><settlement type="city">Toulouse</settlement>
<region type="region" nuts="2">Occitanie (région administrative)</region>
<region type="old region" nuts="2">Midi-Pyrénées</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Legal, L" sort="Legal, L" uniqKey="Legal L" first="L." last="Legal">L. Legal</name>
<affiliation wicri:level="4"><country xml:lang="fr">France</country>
<wicri:regionArea>ECOLAB, Université Paul Sabatier, Toulouse cedex 4</wicri:regionArea>
<orgName type="university">Université Toulouse III - Paul Sabatier</orgName>
<placeName><settlement type="city">Toulouse</settlement>
<region type="region" nuts="2">Occitanie (région administrative)</region>
<region type="old region" nuts="2">Midi-Pyrénées</region>
</placeName>
</affiliation>
</author>
<author><name sortKey="Loot, G" sort="Loot, G" uniqKey="Loot G" first="G." last="Loot">G. Loot</name>
<affiliation wicri:level="4"><country xml:lang="fr">France</country>
<wicri:regionArea>Laboratoire Evolution et Diversité Biologique, Université Paul Sabatier, Toulouse cedex 4</wicri:regionArea>
<orgName type="university">Université Toulouse III - Paul Sabatier</orgName>
<placeName><settlement type="city">Toulouse</settlement>
<region type="region" nuts="2">Occitanie (région administrative)</region>
<region type="old region" nuts="2">Midi-Pyrénées</region>
</placeName>
</affiliation>
</author>
</analytic>
<monogr></monogr>
<series><title level="j">Journal of Zoological Systematics and Evolutionary Research</title>
<idno type="ISSN">0947-5745</idno>
<idno type="eISSN">1439-0469</idno>
<imprint><publisher>Blackwell Publishing Ltd</publisher>
<pubPlace>Oxford, UK</pubPlace>
<date type="published" when="2008-11">2008-11</date>
<biblScope unit="volume">46</biblScope>
<biblScope unit="issue">4</biblScope>
<biblScope unit="page" from="289">289</biblScope>
<biblScope unit="page" to="296">296</biblScope>
</imprint>
<idno type="ISSN">0947-5745</idno>
</series>
<idno type="istex">08CBA7044F5CA2169A35BE519EF26C804CCC45C0</idno>
<idno type="DOI">10.1111/j.1439-0469.2008.00471.x</idno>
<idno type="ArticleID">JZS471</idno>
</biblStruct>
</sourceDesc>
<seriesStmt><idno type="ISSN">0947-5745</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Ligula intestinalis</term>
<term>genetic diversity</term>
<term>geographic isolation</term>
<term>inter‐simple sequence repeat</term>
<term>parasite clustering</term>
<term>self‐organizing map</term>
</keywords>
</textClass>
<langUsage><language ident="en">en</language>
</langUsage>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">In order to investigate the genetic diversity of Ligula intestinalis populations, nine inter‐simple sequence repeat (ISSR) markers were applied to populations from nine geographical areas around the world and 10 host species. The 110 loci selected from the ISSR patterns produced revealed high variability among the analysed samples, with a polymorphism of 100% and a global coefficient of gene differentiation estimated by Nei’s index (GST) of 0.776. Major genetic differentiation was found to be correlated to five broad geographical regions (Europe, China, Canada, Australia and Algeria). Nevertheless, no significant genetic variation was found among European isolates, although they originated from disparate geographical localities and/or unrelated hosts. Classical classification methods: maximum parsimony and factorial correspondence analysis were compared with an advanced statistical method: the self‐organizing map (SOM). The results demonstrated that the ISSR approach is rapid and inexpensive and provides reliable markers to assess genetic diversity of L. intestinalis. Furthermore, SOM artificial neuronal networks are considered to provide an efficient alternative tool for mapping the genetic structures of parasite populations.</div>
</front>
</TEI>
</record>
Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Eau/explor/EsturgeonV1/Data/Main/Curation
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000A90 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Curation/biblio.hfd -nk 000A90 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien |wiki= Wicri/Eau |area= EsturgeonV1 |flux= Main |étape= Curation |type= RBID |clé= ISTEX:08CBA7044F5CA2169A35BE519EF26C804CCC45C0 |texte= Genetic diversity of Ligula intestinalis (Cestoda: Diphyllobothriidea) based on analysis of inter‐simple sequence repeat markers }}
This area was generated with Dilib version V0.6.27. |